Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.1e-289 999.2 486 100.0
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.2e-275 952.6 497 94.0
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 4.8e-261 904.0 497 90.7
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 8.2e-245 850.1 497 86.1
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 1.5e-241 839.3 497 85.5
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 9.8e-214 746.9 509 76.0
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 1.2e-187 660.2 509 66.8
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 5.6e-185 651.4 510 67.3
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 1.8e-162 576.6 500 61.2
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 2.0e-158 563.1 502 58.8
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 6.5e-157 558.1 511 58.3
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 5.5e-156 555.1 516 56.2
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 5.5e-156 555.1 510 59.2
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 3.6e-155 552.4 542 56.1
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 2.3e-154 549.7 512 57.2
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 1.9e-153 546.6 521 57.0
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 2.5e-153 546.2 501 57.7
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 3.3e-153 545.8 505 57.0
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 4.3e-153 545.4 494 59.9
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 1.3e-152 543.9 499 58.7
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 2.8e-152 542.7 516 56.8
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 1.1e-151 540.8 519 54.7
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 1.1e-151 540.8 464 61.4
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 1.8e-151 540.0 515 56.3
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 3.1e-151 539.3 511 55.4
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 6.9e-151 538.1 495 57.4
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 7.7e-150 534.6 512 55.7
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 1.0e-149 534.3 505 56.0
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 2.2e-149 533.1 512 55.3
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 5.0e-149 531.9 444 61.9
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 6.5e-149 531.6 516 55.2
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 8.5e-149 531.2 518 53.5
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 3.2e-148 529.3 527 54.8
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 4.2e-148 528.9 495 55.6
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 7.2e-148 528.1 503 55.9
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 1.6e-147 526.9 518 53.7
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 1.6e-147 526.9 496 57.1
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 3.6e-147 525.8 525 54.3
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 1.4e-146 523.9 525 54.3
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 1.4e-146 523.9 520 54.2
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 2.3e-146 523.1 507 53.5
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 1.1e-145 520.8 498 55.4
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 2.0e-145 520.0 432 61.1
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 4.4e-145 518.8 481 56.8
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 7.4e-145 518.1 505 54.3
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 9.7e-145 517.7 512 54.3
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 2.8e-144 516.2 465 57.6
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 2.8e-144 516.2 528 52.5
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 5.3e-143 511.9 500 53.6
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 1.2e-142 510.8 510 53.9
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 1.5e-142 510.4 521 52.2
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 2.6e-142 509.6 459 58.2
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 2.6e-142 509.6 476 56.3
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 4.5e-142 508.8 426 59.4
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 6.5e-141 505.0 498 54.6
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 6.5e-141 505.0 510 53.3
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 8.5e-141 504.6 515 52.4
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 8.5e-141 504.6 498 55.2
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 8.5e-141 504.6 496 54.0
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 5.5e-140 501.9 504 54.4
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 1.6e-139 500.4 519 51.8
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 2.1e-139 500.0 505 54.1
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 2.1e-139 500.0 488 56.6
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 3.6e-139 499.2 504 53.8
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 6.1e-139 498.4 548 50.0
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 6.7e-138 495.0 514 53.5
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 6.7e-138 495.0 491 52.5
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 8.8e-138 494.6 515 52.8
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 1.1e-137 494.2 500 53.4
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 5.7e-137 491.9 486 53.5
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 7.4e-137 491.5 524 52.1
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 3.1e-135 486.1 477 54.1
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 9.1e-135 484.6 425 58.8
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 1.2e-134 484.2 501 52.1
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 2.6e-134 483.0 439 57.2
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 1.7e-133 480.3 409 59.9
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 1.9e-132 476.9 391 60.9
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 1.6e-131 473.8 487 50.5
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 4.7e-131 472.2 401 58.4
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 3.0e-130 469.5 468 55.8
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 1.2e-129 467.6 526 47.9
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 2.6e-129 466.5 457 53.4
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 6.3e-128 461.8 401 58.9
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 2.7e-123 446.4 398 56.0
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 3.6e-123 446.0 389 57.8
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 7.5e-121 438.3 494 51.2
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 2.2e-120 436.8 434 53.2
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 8.3e-120 434.9 453 51.4
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 1.6e-118 430.6 386 56.7
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 3.8e-117 426.0 367 60.5
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 2.3e-114 416.8 311 63.0
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 2.0e-110 403.7 531 45.6
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 1.7e-104 384.0 382 53.7
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 4.1e-103 379.4 381 49.9
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 3.3e-100 369.8 382 48.4
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 9.5e-100 368.2 332 57.5
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 8.0e-99 365.2 352 49.1
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 7.5e-97 358.6 392 46.4
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 7.5e-97 358.6 438 47.5
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 2.4e-95 353.6 398 50.0
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 2.3e-93 347.1 278 64.0
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 7.1e-79 298.9 244 61.1
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 7.1e-79 298.9 244 61.1
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 2.6e-73 280.4 380 41.3
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 2.3e-69 267.3 368 39.1
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 2.3e-69 267.3 254 57.9
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 3.9e-69 266.5 312 46.8
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 1.1e-68 265.0 254 57.5
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 1.5e-68 264.6 329 45.3
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 1.0e-61 241.9 259 52.1
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 1.0e-61 241.9 259 51.4
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 7.4e-60 235.7 182 62.6
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 5.3e-58 229.6 229 54.6
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 1.5e-57 228.0 222 55.0
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 2.4e-50 204.1 356 33.1
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 1.0e-45 188.7 334 34.7
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 3.9e-45 186.8 194 53.6
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 5.3e-42 176.4 259 42.1
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 2.6e-41 174.1 193 49.2
MD10G1034600 Malus domestica HOM05D005921 ORTHO05D007374 6.5e-32 142.9 123 61.0
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 5.1e-29 133.3 86 62.8
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 9.7e-28 129.0 340 30.3
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 1.0e-24 119.0 95 58.9
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 5.2e-21 106.7 101 51.5
Prupe.8G040900 Prunus persica HOM05D005921 ORTHO05D007374 6.7e-21 106.3 94 59.6
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 2.6e-20 104.4 332 26.2
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 8.2e-19 99.4 58 75.9
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 1.0e-16 92.4 55 67.3
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 9.4e-15 85.9 103 41.7
Sabra02G0051300 Salix brachista HOM05D005921 ORTHO05D007374 4.7e-06 57.0 89 38.2


User provided reference genes

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