Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G2495 Fragaria x ananassa HOM05D006470 ORTHO05D007978 4.5e-192 674.9 458 100.0
FAN15G1173 Fragaria x ananassa HOM05D006470 ORTHO05D007978 3.7e-186 655.2 458 97.2
FAN27G1109 Fragaria x ananassa HOM05D006470 ORTHO05D007978 4.1e-185 651.7 458 96.1
FAN24G3268 Fragaria x ananassa HOM05D006470 ORTHO05D007978 1.9e-182 642.9 458 92.4
FvH4_2g21070 Fragaria vesca HOM05D006470 ORTHO05D007978 4.3e-179 631.7 460 92.0
RcHm_v2.0_Chr6g0287531 Rosa chinensis HOM05D006470 ORTHO05D007978 3.2e-158 562.4 461 87.0
Thecc.01G254400 Theobroma cacao HOM05D006470 ORTHO05D007978 2.6e-99 366.7 438 65.1
QL09p040137 Quercus lobata HOM05D006470 ORTHO05D007978 2.9e-98 363.2 444 57.0
CiPaw.03G267400 Carya illinoinensis HOM05D006470 ORTHO05D007978 5.4e-97 359.0 463 65.4
Duzib133G1499 Durio zibethinus HOM05D006470 ORTHO05D007978 2.7e-96 356.7 441 65.1
Duzib138G0951 Durio zibethinus HOM05D006470 ORTHO05D007978 3.5e-96 356.3 444 66.2
COL.COLO4_04011 Corchorus olitorius HOM05D006470 ORTHO05D007978 1.3e-95 354.4 440 63.9
MD10G1180100 Malus domestica HOM05D006470 ORTHO05D007978 1.9e-94 350.5 434 56.0
Gorai.001G179700 Gossypium raimondii HOM05D006470 ORTHO05D007978 1.4e-89 334.3 462 58.2
Gohir.D07G156600 Gossypium hirsutum HOM05D006470 ORTHO05D007978 1.9e-89 334.0 462 57.8
Dinv22382 Davidia involucrata HOM05D006470 ORTHO05D007978 3.1e-84 316.6 404 61.1
Manes.13G036500 Manihot esculenta HOM05D006470 ORTHO05D007978 2.0e-83 313.9 474 60.5
TWI18G0736 Tripterygium wilfordii HOM05D006470 ORTHO05D007978 4.5e-83 312.8 452 61.1
Hma1.2p1_0576F.1_g181850 Hydrangea macrophylla HOM05D006470 ORTHO05D007978 7.6e-83 312.0 441 51.2
Manes.12G034500 Manihot esculenta HOM05D006470 ORTHO05D007978 3.8e-82 309.7 451 62.3
FAN27G1256 Fragaria x ananassa HOM05D006470 ORTHO05D007978 4.6e-80 302.8 172 99.4
Lj5g0015356 Lotus japonicus HOM05D006470 ORTHO05D007978 1.5e-78 297.7 434 60.6
Cpa.g.sc165.30 Carica papaya HOM05D006470 ORTHO05D007978 1.9e-78 297.4 422 61.4
TWI12G0101 Tripterygium wilfordii HOM05D006470 ORTHO05D007978 9.6e-78 295.0 455 60.2
Ca_09663_v3 Cicer arietinum L. HOM05D006470 ORTHO05D007978 1.3e-77 294.7 450 57.6
arahy.Tifrunner.gnm1.ann1.NTND9X Arachis hypogaea HOM05D006470 ORTHO05D007978 9.0e-76 288.5 462 54.8
Potri.005G227600 Populus trichocarpa HOM05D006470 ORTHO05D007978 7.6e-75 285.4 471 56.5
MBI10_g13794_MAGBIO Magnolia biondii HOM05D006470 ORTHO05D007978 1.4e-73 281.2 427 64.4
Lj2P1147T22 Lonicera japonica HOM05D006470 ORTHO05D007978 2.5e-73 280.4 456 59.4
SGA_v2.0_scaffold1G00631 Striga asiatica HOM05D006470 ORTHO05D007978 2.5e-73 280.4 459 50.3
Psat6g062280 Pisum sativum HOM05D006470 ORTHO05D007978 2.1e-72 277.3 396 58.3
Lalb_Chr25g0289891 Lupinus albus HOM05D006470 ORTHO05D007978 2.3e-71 273.9 460 56.5
Nitab4.5_0003295g0060 Nicotiana tabacum HOM05D006470 ORTHO05D007978 8.7e-71 271.9 419 59.2
Phvul.007G191000 Phaseolus vulgaris HOM05D006470 ORTHO05D007978 1.5e-70 271.2 435 56.8
VMungo0720G2572 Vigna mungo HOM05D006470 ORTHO05D007978 2.5e-70 270.4 454 57.7
HanXRQChr10g0280761 Helianthus annuus HOM05D006470 ORTHO05D007978 3.3e-70 270.0 454 57.5
Nitab4.5_0001945g0030 Nicotiana tabacum HOM05D006470 ORTHO05D007978 1.3e-69 268.1 416 57.7
Thhalv10027034m.g Eutrema salsugineum HOM05D006470 ORTHO05D007978 3.7e-69 266.5 414 49.8
Sp7g26550 Schrenkiella parvula HOM05D006470 ORTHO05D007978 6.3e-69 265.8 378 56.6
Aa31LG2G21810 Aethionema arabicum HOM05D006470 ORTHO05D007978 1.1e-68 265.0 406 55.7
Aqoxy5G00193 Aquilegia oxysepala HOM05D006470 ORTHO05D007978 4.1e-68 263.1 448 57.1
Gohir.A07G150300 Gossypium hirsutum HOM05D006470 ORTHO05D007978 4.1e-68 263.1 462 53.5
Peaxi162Scf00415g00003 Petunia axillaris HOM05D006470 ORTHO05D007978 5.3e-68 262.7 427 55.7
Lsat_1_v5_gn_9_10681 Lactuca sativa HOM05D006470 ORTHO05D007978 2.6e-67 260.4 464 54.5
Prupe.8G220100 Prunus persica HOM05D006470 ORTHO05D007978 7.6e-67 258.8 460 59.6
Sabra05G0175600 Salix brachista HOM05D006470 ORTHO05D007978 1.0e-66 258.5 460 54.8
SHI26693 Sapria himalayana HOM05D006470 ORTHO05D007978 1.3e-66 258.1 428 50.9
BcaNung04289 Brassica carinata HOM05D006470 ORTHO05D007978 1.1e-65 255.0 420 49.3
BraA01t00881Z Brassica rapa HOM05D006470 ORTHO05D007978 1.4e-65 254.6 389 51.4
AT4G28560 Arabidopsis thaliana HOM05D006470 ORTHO05D007978 1.9e-65 254.2 400 62.0
Glyma.10G038800 Glycine max HOM05D006470 ORTHO05D007978 1.9e-65 254.2 459 47.1
AL7G23980 Arabidopsis lyrata HOM05D006470 ORTHO05D007978 3.2e-65 253.4 383 61.4
Actinidia37529 Actinidia chinensis HOM05D006470 ORTHO05D007978 7.2e-65 252.3 429 50.6
C01p10920 Brassica napus HOM05D006470 ORTHO05D007978 7.2e-65 252.3 391 54.7
CARHR236350 Cardamine hirsuta HOM05D006470 ORTHO05D007978 1.6e-64 251.1 383 59.5
A01p09340 Brassica napus HOM05D006470 ORTHO05D007978 4.6e-64 249.6 389 51.2
Medtr1g069695 Medicago truncatula HOM05D006470 ORTHO05D007978 1.8e-63 247.7 463 53.1
Rhsim13G0037300 Rhododendron simsii HOM05D006470 ORTHO05D007978 3.0e-63 246.9 426 57.3
PSO210G2696 Papaver somniferum HOM05D006470 ORTHO05D007978 8.8e-63 245.4 425 58.8
Solyc09g072630.3 Solanum lycopersicum HOM05D006470 ORTHO05D007978 1.5e-62 244.6 402 58.2
BcaC09g51655 Brassica carinata HOM05D006470 ORTHO05D007978 1.9e-62 244.2 391 53.5
BolC1t01056H Brassica oleracea HOM05D006470 ORTHO05D007978 1.9e-62 244.2 391 53.5
CSS0034739 Camellia sinensis var. sinensis HOM05D006470 ORTHO05D007978 3.3e-62 243.4 456 56.1
DCAR_012563 Daucus carota HOM05D006470 ORTHO05D007978 1.7e-61 241.1 422 47.6
CSS0011402 Camellia sinensis var. sinensis HOM05D006470 ORTHO05D007978 3.1e-60 236.9 456 55.5
BcaNung04688 Brassica carinata HOM05D006470 ORTHO05D007978 1.2e-59 235.0 420 40.5
PSO832G0066 Papaver somniferum HOM05D006470 ORTHO05D007978 4.5e-59 233.0 427 58.3
AUR62025485 Chenopodium quinoa HOM05D006470 ORTHO05D007978 1.0e-58 231.9 426 47.4
Haze_24664 Corylus avellana HOM05D006470 ORTHO05D007978 1.0e-58 231.9 187 63.6
Atru.BG.79.p Acer truncatum HOM05D006470 ORTHO05D007978 5.0e-58 229.6 326 69.0
ClCG07G001200 Citrullus lanatus HOM05D006470 ORTHO05D007978 6.5e-58 229.2 439 54.9
Cfa002452 Carpinus fangiana HOM05D006470 ORTHO05D007978 2.5e-57 227.3 187 62.0
Sc05g0003180 Simmondsia chinensis HOM05D006470 ORTHO05D007978 7.2e-57 225.7 408 46.3
Psat6g062240 Pisum sativum HOM05D006470 ORTHO05D007978 3.6e-56 223.4 356 61.0
Ciclev10020031m.g Citrus clementina HOM05D006470 ORTHO05D007978 1.4e-55 221.5 188 61.2
vmacro02686 Vaccinium macrocarpon HOM05D006470 ORTHO05D007978 1.1e-54 218.4 420 58.3
SalBow4G0507 Salvia bowleyana HOM05D006470 ORTHO05D007978 1.7e-53 214.5 455 42.9
MELO3C012860.2 Cucumis melo HOM05D006470 ORTHO05D007978 1.8e-52 211.1 420 53.1
Cc01_g18070 Coffea canephora HOM05D006470 ORTHO05D007978 1.5e-51 208.0 417 53.7
Nn3g19710 Nelumbo nucifera HOM05D006470 ORTHO05D007978 1.0e-50 205.3 412 55.6
Psat6g063200 Pisum sativum HOM05D006470 ORTHO05D007978 1.6e-48 198.0 345 58.3
ClCG00G001450 Citrullus lanatus HOM05D006470 ORTHO05D007978 4.7e-48 196.4 189 54.5
Migut.D00451 Erythranthe guttata HOM05D006470 ORTHO05D007978 2.3e-47 194.1 473 44.6
Sed0015172 Sechium edule HOM05D006470 ORTHO05D007978 1.5e-46 191.4 188 53.2
Hma1.2p1_0273F.1_g109440 Hydrangea macrophylla HOM05D006470 ORTHO05D007978 9.7e-46 188.7 405 32.3
Carub.0007s1211 Capsella rubella HOM05D006470 ORTHO05D007978 1.7e-45 188.0 165 57.6
CsaV3_3G022070 Cucumis sativus L. HOM05D006470 ORTHO05D007978 2.2e-45 187.6 187 50.8
Nn1g02880 Nelumbo nucifera HOM05D006470 ORTHO05D007978 5.3e-44 183.0 333 61.9
Sed0003902 Sechium edule HOM05D006470 ORTHO05D007978 5.3e-44 183.0 189 50.3
THA.LOC104814525 Tarenaya hassleriana HOM05D006470 ORTHO05D007978 7.0e-44 182.6 159 59.7
BcaNung04689 Brassica carinata HOM05D006470 ORTHO05D007978 2.2e-42 177.6 202 51.5
Lsat_1_v5_gn_5_182700 Lactuca sativa HOM05D006470 ORTHO05D007978 1.2e-40 171.8 165 55.2
TAR362G1291 Trochodendron aralioides HOM05D006470 ORTHO05D007978 1.6e-40 171.4 181 52.5
Oeu039680.1 Olea europaea HOM05D006470 ORTHO05D007978 3.3e-38 163.7 152 55.9
ECA248G1135 Erigeron canadensis HOM05D006470 ORTHO05D007978 1.2e-35 155.2 165 50.3
Oeu052037.1 Olea europaea HOM05D006470 ORTHO05D007978 2.0e-35 154.5 315 42.9
HPP92_012855 Vanilla planifolia HOM05D006470 ORTHO05D007978 4.5e-35 153.3 157 50.3
CDE08G1533 Ceratophyllum demersum HOM05D006470 ORTHO05D007978 7.7e-35 152.5 180 42.8
Sopen09g028440 Solanum pennellii HOM05D006470 ORTHO05D007978 5.0e-34 149.8 157 48.4
PGSC0003DMG400010325 Solanum tuberosum HOM05D006470 ORTHO05D007978 1.5e-33 148.3 148 50.0
Glyma.13G125201 Glycine max HOM05D006470 ORTHO05D007978 5.5e-33 146.4 150 55.3
CAN.G1251.2 Capsicum annuum HOM05D006470 ORTHO05D007978 1.0e-31 142.1 150 44.0
CAN.G1868.1 Capsicum annuum HOM05D006470 ORTHO05D007978 1.0e-31 142.1 150 44.0
ATR0736G105 Amborella trichopoda HOM05D006470 ORTHO05D007978 1.4e-31 141.7 397 51.6
CDE02G3387 Ceratophyllum demersum HOM05D006470 ORTHO05D007978 5.2e-31 139.8 185 41.1
ATR0681G334 Amborella trichopoda HOM05D006470 ORTHO05D007978 7.7e-27 125.9 157 43.3
EL10Ac7g17624 Beta vulgaris HOM05D006470 ORTHO05D007978 7.7e-27 125.9 87 67.8
Os06g0627500 Oryza sativa ssp. japonica HOM05D006470 ORTHO05D007978 1.0e-26 125.6 182 40.1
TPR.G29693 Trifolium pratense HOM05D006470 ORTHO05D007978 1.7e-26 124.8 119 51.3
SEGI_23933 Sequoiadendron giganteum HOM05D006470 ORTHO05D007978 2.9e-26 124.0 181 39.2
AUR62008754 Chenopodium quinoa HOM05D006470 ORTHO05D007978 9.5e-25 119.0 290 47.6
SMO358G0434 Selaginella moellendorffii HOM05D006470 ORTHO05D007978 2.8e-24 117.5 150 41.3
unitig_0.g163 Utricularia gibba HOM05D006470 ORTHO05D007978 6.1e-24 116.3 113 54.9
Actinidia30147 Actinidia chinensis HOM05D006470 ORTHO05D007978 1.5e-22 111.7 101 54.5
Medtr1g069665 Medicago truncatula HOM05D006470 ORTHO05D007978 2.3e-18 97.8 185 34.6
Medtr1g069680 Medicago truncatula HOM05D006470 ORTHO05D007978 1.1e-17 95.5 160 37.5
SMO118G0043 Selaginella moellendorffii HOM05D006470 ORTHO05D007978 1.1e-17 95.5 163 37.4
HanXRQChr06g0170811 Helianthus annuus HOM05D004034 ORTHO05D004210 3.7e-13 80.5 169 29.6
Sabra08G0150800 Salix brachista HOM05D004034 ORTHO05D004210 1.6e-11 75.1 177 32.8
Actinidia15759 Actinidia chinensis HOM05D007391 ORTHO05D009446 2.0e-11 74.7 158 34.2
CANSAT64G0821 Cannabis sativa HOM05D004034 ORTHO05D004210 4.6e-11 73.6 162 28.4
Mapoly0066s0046 Marchantia polymorpha HOM05D006470 ORTHO05D007978 6.0e-11 73.2 149 34.2
Pp3c23_19100 Physcomitrium patens HOM05D006470 ORTHO05D004210 2.3e-10 71.2 185 30.8
Nn8g39512 Nelumbo nucifera HOM05D007391 ORTHO05D009446 3.9e-10 70.5 145 34.5
Prupe.3G169100 Prunus persica HOM05D004034 ORTHO05D004210 5.0e-10 70.1 154 29.9
Manes.02G086800 Manihot esculenta HOM05D004034 ORTHO05D004210 1.1e-09 68.9 189 31.7
BolC5t29758H Brassica oleracea HOM05D003233 ORTHO05D003694 3.3e-09 67.4 405 44.0
CsaV3_6G015660 Cucumis sativus L. HOM05D004034 ORTHO05D004210 3.3e-09 67.4 184 29.9
Medtr1g069675 Medicago truncatula HOM05D006470 ORTHO05D007978 3.3e-09 67.4 89 41.6
C05p10120 Brassica napus HOM05D003233 ORTHO05D003694 4.3e-09 67.0 405 46.4
TWI59G0196 Tripterygium wilfordii HOM05D004034 ORTHO05D004210 5.6e-09 66.6 152 29.6
AagrBONN_evm.TU.Sc2ySwM_344.1632 Anthoceros agrestis HOM05D003233 ORTHO05D003694 9.5e-09 65.9 155 30.3
A06p08520 Brassica napus HOM05D003233 ORTHO05D003694 1.2e-08 65.5 187 32.6
BraA06t24047Z Brassica rapa HOM05D003233 ORTHO05D003694 1.2e-08 65.5 187 32.6
Hma1.2p1_0178F.1_g078140 Hydrangea macrophylla HOM05D004034 ORTHO05D004210 1.2e-08 65.5 154 27.3
SMO339G0042 Selaginella moellendorffii HOM05D007391 ORTHO05D009446 1.6e-08 65.1 163 33.7
Os01g0729400 Oryza sativa ssp. japonica HOM05D004034 ORTHO05D004210 2.8e-08 64.3 140 32.9
RcHm_v2.0_Chr2g0150831 Rosa chinensis HOM05D004034 ORTHO05D004210 2.8e-08 64.3 168 30.4
Hma1.2p1_0036F.1_g023770 Hydrangea macrophylla HOM05D004034 ORTHO05D004210 3.6e-08 63.9 156 26.3
MBI06_g08520_MAGBIO Magnolia biondii HOM05D004034 ORTHO05D004210 3.6e-08 63.9 147 29.3
Manes.01G128900 Manihot esculenta HOM05D004034 ORTHO05D004210 3.6e-08 63.9 178 29.8
ECA247G3329 Erigeron canadensis HOM05D000038 ORTHO05D003992 6.2e-08 63.2 141 34.8
FAN02G3910 Fragaria x ananassa HOM05D007391 ORTHO05D009446 6.2e-08 63.2 141 33.3
FvH4_6g29640 Fragaria vesca HOM05D007391 ORTHO05D009446 8.0e-08 62.8 141 33.3
FAN09G3908 Fragaria x ananassa HOM05D007391 ORTHO05D009446 8.0e-08 62.8 141 33.3
FAN14G5578 Fragaria x ananassa HOM05D007391 ORTHO05D009446 8.0e-08 62.8 141 33.3
CAN.G1191.8 Capsicum annuum HOM05D004034 ORTHO05D004210 1.4e-07 62.0 186 26.3
Zm00001eb159500 Zea mays HOM05D007391 ORTHO05D009446 1.4e-07 62.0 158 34.8
FvH4_6g37770 Fragaria vesca HOM05D004034 ORTHO05D004210 1.8e-07 61.6 187 29.9
FAN14G2402 Fragaria x ananassa HOM05D004034 ORTHO05D004210 1.8e-07 61.6 187 29.9
SEGI_17016 Sequoiadendron giganteum HOM05D004034 ORTHO05D004210 1.8e-07 61.6 152 28.3
Ciclev10025464m.g Citrus clementina HOM05D007391 ORTHO05D009446 2.3e-07 61.2 144 32.6
FAN05G2656 Fragaria x ananassa HOM05D004034 ORTHO05D004210 2.3e-07 61.2 182 31.9
Prupe.3G087800 Prunus persica HOM05D007391 ORTHO05D009446 2.3e-07 61.2 141 32.6
CDE02G2129 Ceratophyllum demersum HOM05D007391 ORTHO05D009446 5.2e-07 60.1 171 28.7
Hund05775 Selenicereus undatus HOM05D003233 ORTHO05D003694 8.9e-07 59.3 158 29.7
RcHm_v2.0_Chr2g0135241 Rosa chinensis HOM05D007391 ORTHO05D009446 1.5e-06 58.5 141 32.6
C07p34540 Brassica napus HOM05D003233 ORTHO05D003694 2.0e-06 58.2 381 45.1
BolC7t43985H Brassica oleracea HOM05D003233 ORTHO05D003694 2.0e-06 58.2 381 45.1
CARHR013610 Cardamine hirsuta HOM05D003233 ORTHO05D003694 2.0e-06 58.2 168 29.2
Hund25113 Selenicereus undatus HOM05D003233 ORTHO05D003694 2.6e-06 57.8 162 32.1
BcaC06g33970 Brassica carinata HOM05D003233 ORTHO05D003694 3.4e-06 57.4 136 34.6
FAN09G1783 Fragaria x ananassa HOM05D004034 ORTHO05D004210 3.4e-06 57.4 182 30.8
MSTRG.13498 Avicennia marina HOM05D003233 ORTHO05D003694 4.4e-06 57.0 135 36.3
Nn6g34427 Nelumbo nucifera HOM05D004034 ORTHO05D004210 4.4e-06 57.0 136 27.2
HPP92_014007 Vanilla planifolia HOM05D004034 ORTHO05D004210 5.8e-06 56.6 182 26.9
HPP92_026836 Vanilla planifolia HOM05D004034 ORTHO05D004210 5.8e-06 56.6 182 26.9
FAN02G3754 Fragaria x ananassa HOM05D004034 ORTHO05D004210 9.8e-06 55.8 182 30.8


User provided reference genes

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