Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G2477 Fragaria x ananassa HOM05D007323 ORTHO05D009238 1.1e-122 443.4 234 100.0
FAN27G1709 Fragaria x ananassa HOM05D007323 ORTHO05D009238 8.9e-120 433.7 234 97.9
FvH4_2g30980 Fragaria vesca HOM05D007323 ORTHO05D009238 1.2e-119 433.3 234 97.4
FAN24G0989 Fragaria x ananassa HOM05D007323 ORTHO05D009238 3.4e-119 431.8 234 97.4
RcHm_v2.0_Chr6g0311811 Rosa chinensis HOM05D007323 ORTHO05D009238 4.7e-113 411.4 234 93.2
MD15G1049800 Malus domestica HOM05D007323 ORTHO05D009238 9.5e-98 360.5 242 81.4
Prupe.1G404100 Prunus persica HOM05D007323 ORTHO05D009238 2.9e-94 349.0 243 79.8
Cfa017873 Carpinus fangiana HOM05D007323 ORTHO05D009238 5.8e-79 298.1 239 69.9
Ciclev10009314m.g Citrus clementina HOM05D007323 ORTHO05D009238 9.3e-77 290.8 245 64.5
Lj1g0021270 Lotus japonicus HOM05D007323 ORTHO05D009238 2.3e-75 286.2 235 68.1
QL02p017014 Quercus lobata HOM05D007323 ORTHO05D009238 6.7e-75 284.6 249 65.1
TWI34G0887 Tripterygium wilfordii HOM05D007323 ORTHO05D009238 8.7e-75 284.3 243 65.4
VMungo1309G0522 Vigna mungo HOM05D007323 ORTHO05D009238 1.1e-74 283.9 236 68.2
Glyma.06G055900 Glycine max HOM05D007323 ORTHO05D009238 2.5e-74 282.7 236 67.4
Lalb_Chr08g0244811 Lupinus albus HOM05D007323 ORTHO05D009238 4.3e-74 282.0 236 67.4
Thecc.09G063400 Theobroma cacao HOM05D007323 ORTHO05D009238 4.3e-74 282.0 243 63.8
Phvul.009G082000 Phaseolus vulgaris HOM05D007323 ORTHO05D009238 9.6e-74 280.8 237 67.5
Ca_15835_v3 Cicer arietinum L. HOM05D007323 ORTHO05D009238 5.3e-72 275.0 237 66.2
COL.COLO4_21139 Corchorus olitorius HOM05D007323 ORTHO05D009238 2.6e-71 272.7 244 61.5
Haze_18294 Corylus avellana HOM05D007323 ORTHO05D009238 2.6e-71 272.7 289 57.4
CiPaw.16G068300 Carya illinoinensis HOM05D007323 ORTHO05D009238 5.8e-71 271.6 237 64.1
Duzib150G1239 Durio zibethinus HOM05D007323 ORTHO05D009238 1.3e-70 270.4 243 63.4
Manes.16G085700 Manihot esculenta HOM05D007323 ORTHO05D009238 2.4e-69 266.2 242 64.9
PGR031G0894 Punica granatum HOM05D007323 ORTHO05D009238 1.2e-68 263.8 230 63.5
Nn8g38659 Nelumbo nucifera HOM05D007323 ORTHO05D009238 4.6e-68 261.9 218 65.1
Gorai.001G020100 Gossypium raimondii HOM05D007323 ORTHO05D009238 7.9e-68 261.2 235 65.5
TPR.G3557 Trifolium pratense HOM05D007323 ORTHO05D009238 1.8e-67 260.0 236 62.7
arahy.Tifrunner.gnm1.ann1.7DEW7H Arachis hypogaea HOM05D007323 ORTHO05D009238 5.1e-67 258.5 243 63.4
CANSAT25G3877 Cannabis sativa HOM05D007323 ORTHO05D009238 5.1e-67 258.5 209 68.4
Medtr3g105050 Medicago truncatula HOM05D007323 ORTHO05D009238 2.5e-66 256.1 236 63.1
Dinv41843 Davidia involucrata HOM05D007323 ORTHO05D009238 3.3e-66 255.8 235 63.0
HanXRQChr10g0309971 Helianthus annuus HOM05D007323 ORTHO05D009238 3.3e-66 255.8 239 59.4
Gohir.D07G019400 Gossypium hirsutum HOM05D007323 ORTHO05D009238 5.6e-66 255.0 234 65.0
Eucgr.B01965 Eucalyptus grandis HOM05D007323 ORTHO05D009238 7.4e-66 254.6 197 68.5
Potri.006G220800 Populus trichocarpa HOM05D007323 ORTHO05D009238 1.6e-65 253.4 247 60.7
Sabra06G0170600 Salix brachista HOM05D007323 ORTHO05D009238 4.8e-65 251.9 248 59.3
Sed0017686 Sechium edule HOM05D007323 ORTHO05D009238 6.2e-65 251.5 245 59.6
Cc08_g01150 Coffea canephora HOM05D007323 ORTHO05D009238 1.8e-64 250.0 241 60.6
ECA234G0604 Erigeron canadensis HOM05D007323 ORTHO05D009238 5.3e-64 248.4 241 58.5
Gohir.A07G019600 Gossypium hirsutum HOM05D007323 ORTHO05D009238 6.9e-64 248.1 208 67.8
MELO3C011483.2 Cucumis melo HOM05D007323 ORTHO05D009238 9.0e-64 247.7 206 66.0
Nitab4.5_0000446g0180 Nicotiana tabacum HOM05D007323 ORTHO05D009238 1.2e-63 247.3 242 58.7
Nitab4.5_0002831g0040 Nicotiana tabacum HOM05D007323 ORTHO05D009238 1.5e-63 246.9 242 58.7
Lsat_1_v5_gn_5_79461 Lactuca sativa HOM05D007323 ORTHO05D009238 2.0e-63 246.5 242 57.0
EL10Ac2g03780 Beta vulgaris HOM05D007323 ORTHO05D009238 2.6e-63 246.1 239 61.1
Actinidia03545 Actinidia chinensis HOM05D007323 ORTHO05D009238 3.4e-63 245.7 206 65.5
arahy.Tifrunner.gnm1.ann1.287SRD Arachis hypogaea HOM05D007323 ORTHO05D009238 4.5e-63 245.4 250 60.4
THA.LOC104819519 Tarenaya hassleriana HOM05D007323 ORTHO05D009238 1.3e-62 243.8 211 62.1
ClCG08G009880 Citrullus lanatus HOM05D007323 ORTHO05D009238 1.7e-62 243.4 246 58.5
GSVIVG01035470001 Vitis vinifera HOM05D007323 ORTHO05D009238 1.7e-62 243.4 182 70.3
Rhsim10G0107900 Rhododendron simsii HOM05D007323 ORTHO05D009238 6.5e-62 241.5 175 74.9
Sopen08g017220 Solanum pennellii HOM05D007323 ORTHO05D009238 4.2e-61 238.8 242 56.6
Thhalv10002091m.g Eutrema salsugineum HOM05D007323 ORTHO05D009238 5.5e-61 238.4 211 63.0
BcaC07g40825 Brassica carinata HOM05D007323 ORTHO05D009238 7.1e-61 238.0 237 59.1
C08p38170 Brassica napus HOM05D007323 ORTHO05D009238 7.1e-61 238.0 237 59.1
BolC8t51392H Brassica oleracea HOM05D007323 ORTHO05D009238 7.1e-61 238.0 237 59.1
CsaV3_6G031970 Cucumis sativus L. HOM05D007323 ORTHO05D009238 9.3e-61 237.7 245 56.3
BraA09t40931Z Brassica rapa HOM05D007323 ORTHO05D009238 2.7e-60 236.1 237 57.8
MSTRG.25986 Avicennia marina HOM05D007323 ORTHO05D009238 4.6e-60 235.3 240 58.8
A09p55240 Brassica napus HOM05D007323 ORTHO05D009238 6.0e-60 235.0 239 57.7
Hund03297 Selenicereus undatus HOM05D007323 ORTHO05D009238 6.0e-60 235.0 235 58.3
Carub.0004s0625 Capsella rubella HOM05D007323 ORTHO05D009238 1.8e-59 233.4 235 58.7
Sp4g06990 Schrenkiella parvula HOM05D007323 ORTHO05D009238 1.8e-59 233.4 235 57.0
Atru.chr7.1847 Acer truncatum HOM05D007323 ORTHO05D009238 5.1e-59 231.9 172 70.9
AL4G18960 Arabidopsis lyrata HOM05D007323 ORTHO05D009238 5.1e-59 231.9 212 61.3
Sc06g0001110 Simmondsia chinensis HOM05D007323 ORTHO05D009238 5.1e-59 231.9 231 58.4
Aqoxy7G01049 Aquilegia oxysepala HOM05D007323 ORTHO05D009238 1.1e-58 230.7 237 59.5
Aa31LG2G12250 Aethionema arabicum HOM05D007323 ORTHO05D009238 4.3e-58 228.8 237 57.4
DCAR_007767 Daucus carota HOM05D007323 ORTHO05D009238 9.6e-58 227.6 219 62.1
SGA_v2.0_scaffold20G09163 Striga asiatica HOM05D007323 ORTHO05D009238 2.8e-57 226.1 240 56.2
BcaB08g35255 Brassica carinata HOM05D007323 ORTHO05D009238 8.2e-57 224.6 235 56.6
AT2G26340 Arabidopsis thaliana HOM05D007323 ORTHO05D009238 5.3e-56 221.9 239 56.9
Migut.A00078 Erythranthe guttata HOM05D007323 ORTHO05D009238 5.3e-56 221.9 240 57.1
Psat5g030560 Pisum sativum HOM05D007323 ORTHO05D009238 6.9e-56 221.5 192 65.1
vmacro05236 Vaccinium macrocarpon HOM05D007323 ORTHO05D009238 6.9e-56 221.5 173 68.8
PSO421G0353 Papaver somniferum HOM05D007323 ORTHO05D009238 9.0e-56 221.1 238 52.1
PSO063G6894 Papaver somniferum HOM05D007323 ORTHO05D009238 1.0e-54 217.6 238 52.1
unitig_8.g4975 Utricularia gibba HOM05D007323 ORTHO05D009238 2.5e-53 213.0 206 56.8
HPP92_024332 Vanilla planifolia HOM05D007323 ORTHO05D009238 7.2e-53 211.5 190 62.1
CDE05G0862 Ceratophyllum demersum HOM05D007323 ORTHO05D009238 7.9e-52 208.0 230 52.2
ATR0598G133 Amborella trichopoda HOM05D007323 ORTHO05D009238 2.3e-51 206.5 175 64.0
CARHR118450 Cardamine hirsuta HOM05D007323 ORTHO05D009238 2.5e-50 203.0 177 64.4
Os03g0176700 Oryza sativa ssp. japonica HOM05D007323 ORTHO05D009238 7.4e-50 201.4 174 62.6
SEGI_00918 Sequoiadendron giganteum HOM05D007323 ORTHO05D009238 3.7e-49 199.1 235 47.7
A09p54710 Brassica napus HOM05D007323 ORTHO05D009238 3.1e-48 196.1 164 64.6
AUR62009079 Chenopodium quinoa HOM05D007323 ORTHO05D009238 9.1e-48 194.5 162 67.3
Zm00001eb005760 Zea mays HOM05D007323 ORTHO05D009238 5.9e-47 191.8 188 57.4
AUR62020587 Chenopodium quinoa HOM05D007323 ORTHO05D009238 2.7e-44 183.0 234 50.9
AagrBONN_evm.TU.Sc2ySwM_228.4439 Anthoceros agrestis HOM05D007323 ORTHO05D009238 2.6e-42 176.4 163 57.1
Pp3c4_13280 Physcomitrium patens HOM05D007323 ORTHO05D009238 9.7e-42 174.5 170 52.4
Eucgr.B01870 Eucalyptus grandis HOM05D007323 ORTHO05D009238 3.7e-41 172.6 135 66.7
TAR636G1368 Trochodendron aralioides HOM05D007323 ORTHO05D009238 1.8e-40 170.2 168 60.7
Peaxi162Scf00486g01025 Petunia axillaris HOM05D007323 ORTHO05D009238 2.0e-39 166.8 239 45.6
Mapoly0001s0019 Marchantia polymorpha HOM05D007323 ORTHO05D009238 2.7e-36 156.4 149 53.7
SMO239G0030 Selaginella moellendorffii HOM05D007323 ORTHO05D009238 6.1e-36 155.2 198 43.9
MBI13_g42814_MAGBIO Magnolia biondii HOM05D007323 ORTHO05D009238 1.1e-29 134.4 359 34.5
Cpa.g.sc126.24 Carica papaya HOM05D007323 ORTHO05D009238 6.1e-28 128.6 104 64.4
CBR_g19268 Chara braunii HOM05D007323 ORTHO05D009238 5.2e-27 125.6 159 40.9
CSS0001075 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 8.8e-27 124.8 104 64.4
CSS0018719 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 8.8e-27 124.8 104 64.4
MD08G1071400 Malus domestica HOM05D007323 ORTHO05D009238 7.7e-23 111.7 62 95.2
Cre16.g684150 Chlamydomonas reinhardtii HOM05D007323 ORTHO05D009238 7.0e-16 88.6 172 34.9
Solyc08g061800.3 Solanum lycopersicum HOM05D007323 ORTHO05D009238 3.0e-11 73.2 106 45.3
Os03g0176800 Oryza sativa ssp. japonica HOM05D009542 ORTHO05D294036 4.4e-10 69.3 140 34.3
Glyma.04G055801 Glycine max HOM05D007323 ORTHO05D009238 5.7e-10 68.9 143 38.5
TAR624G1004 Trochodendron aralioides HOM05D000386 ORTHO05D414906 5.9e-07 58.9 72 51.4


User provided reference genes

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