Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 5.3e-153 544.3 264 100.0
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 1.8e-129 466.1 285 82.8
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.8e-129 466.1 285 82.8
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 8.4e-127 457.2 279 83.2
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 2.1e-125 452.6 285 80.7
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.8e-114 415.6 264 82.2
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 7.2e-110 401.0 285 70.9
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 2.6e-107 392.5 285 69.8
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 8.0e-101 370.9 287 64.5
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 5.7e-99 364.8 285 65.6
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 2.0e-96 356.3 284 63.7
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 4.5e-96 355.1 285 62.1
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 1.0e-95 354.0 284 62.7
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 1.0e-95 354.0 286 62.9
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 1.0e-95 354.0 286 62.9
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 1.3e-95 353.6 286 62.6
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 2.2e-95 352.8 285 63.5
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 1.9e-94 349.7 285 61.8
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 1.9e-94 349.7 285 61.8
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 2.5e-94 349.4 285 61.8
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 5.5e-94 348.2 285 61.4
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 1.2e-93 347.1 285 63.2
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 3.6e-93 345.5 285 61.1
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 4.7e-93 345.1 285 61.4
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 8.0e-93 344.4 285 60.7
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 1.0e-92 344.0 285 61.1
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.4e-92 343.6 285 61.4
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 1.2e-91 340.5 285 60.4
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.5e-91 340.1 285 60.7
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 2.0e-91 339.7 286 60.5
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 4.4e-91 338.6 285 63.2
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 5.7e-91 338.2 295 60.3
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 5.7e-91 338.2 266 63.5
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 7.5e-91 337.8 285 61.4
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 9.8e-91 337.4 286 60.8
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 1.3e-90 337.0 285 61.4
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 1.3e-90 337.0 284 62.0
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 3.7e-90 335.5 285 61.4
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 4.8e-90 335.1 286 60.5
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 4.8e-90 335.1 286 60.5
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 6.3e-90 334.7 286 58.7
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 6.3e-90 334.7 286 60.1
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 1.1e-89 334.0 285 60.7
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 1.1e-89 334.0 322 54.7
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 3.1e-89 332.4 271 62.0
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 4.1e-89 332.0 271 61.6
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 7.0e-89 331.3 285 59.6
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 7.0e-89 331.3 288 59.0
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 7.0e-89 331.3 285 58.6
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 1.2e-88 330.5 285 59.3
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 2.7e-88 329.3 284 58.5
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 2.7e-88 329.3 286 61.2
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 2.7e-88 329.3 285 58.9
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.0e-87 327.4 284 58.8
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.0e-87 327.4 285 58.6
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 1.3e-87 327.0 286 59.1
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 1.3e-87 327.0 286 58.4
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 2.2e-87 326.2 285 58.6
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 5.0e-87 325.1 285 58.9
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 6.5e-87 324.7 285 58.6
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 1.1e-86 323.9 289 59.2
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 1.5e-86 323.6 295 59.3
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 4.2e-86 322.0 286 59.8
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 4.2e-86 322.0 284 58.8
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 5.5e-86 321.6 285 58.2
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 5.5e-86 321.6 285 59.6
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 7.2e-86 321.2 288 56.2
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 7.2e-86 321.2 271 59.4
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 9.4e-86 320.9 254 64.2
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.2e-85 320.5 299 54.8
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 1.6e-85 320.1 285 57.5
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 4.7e-85 318.5 283 57.6
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 4.7e-85 318.5 285 59.6
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 4.7e-85 318.5 287 56.8
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 1.0e-84 317.4 327 52.6
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 6.8e-84 314.7 254 64.2
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 6.8e-84 314.7 285 55.4
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 8.8e-84 314.3 287 56.1
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 1.2e-83 313.9 288 56.2
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.6e-83 312.8 284 56.7
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 5.7e-83 311.6 285 57.2
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 9.8e-83 310.8 285 57.5
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 4.9e-82 308.5 285 55.1
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 6.3e-82 308.1 284 55.6
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 7.0e-81 304.7 285 55.4
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 9.2e-81 304.3 285 55.1
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 1.6e-80 303.5 284 54.9
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 2.0e-80 303.1 284 54.9
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 2.0e-80 303.1 284 56.3
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 1.0e-79 300.8 285 54.7
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 1.0e-79 300.8 286 53.8
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 8.6e-79 297.7 285 54.4
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 1.5e-78 297.0 285 54.0
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 2.5e-78 296.2 285 53.3
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 4.3e-78 295.4 324 49.7
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 4.3e-78 295.4 324 49.7
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 5.6e-78 295.0 285 54.4
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 9.5e-78 294.3 256 58.2
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 2.1e-77 293.1 300 52.3
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 6.1e-77 291.6 240 62.5
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 1.8e-76 290.0 296 52.7
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 4.4e-75 285.4 285 53.7
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 9.8e-75 284.3 255 58.0
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 1.4e-73 280.4 255 58.0
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 2.4e-73 279.6 255 57.3
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 1.8e-68 263.5 255 55.3
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 1.8e-68 263.5 281 50.2
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 3.1e-68 262.7 258 53.9
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 3.1e-68 262.7 278 51.1
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 5.2e-68 261.9 226 60.6
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 1.2e-67 260.8 289 49.5
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 5.4e-65 251.9 278 49.3
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 3.6e-61 239.2 258 49.6
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 6.8e-60 235.0 271 49.8
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 2.6e-59 233.0 208 57.7
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 2.1e-56 223.4 241 50.2
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 3.5e-56 222.6 130 77.7
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 1.3e-55 220.7 280 42.9
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 1.1e-54 217.6 284 45.1
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 1.5e-54 217.2 292 44.5
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 1.3e-50 204.1 176 58.0
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 2.4e-49 199.9 179 57.5
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 9.2e-49 198.0 238 47.1
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 2.2e-34 150.2 106 67.9
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 4.6e-32 142.5 170 47.6
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 7.9e-32 141.7 106 65.1
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 7.9e-32 141.7 106 65.1
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 1.5e-30 137.5 109 59.6
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 2.4e-28 130.2 94 69.1
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 2.1e-24 117.1 263 33.8
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 5.1e-23 112.5 138 47.1
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 5.1e-23 112.5 60 88.3
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 1.9e-22 110.5 100 52.0
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 4.3e-22 109.4 82 62.2
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 3.7e-21 106.3 142 42.3
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 4.8e-21 105.9 90 57.8
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 3.2e-17 93.2 60 73.3
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 7.9e-16 88.6 273 28.6
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 3.9e-15 86.3 108 46.3
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 6.7e-15 85.5 74 59.5
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 1.1e-14 84.7 138 39.9
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 3.3e-14 83.2 92 46.7
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 5.7e-14 82.4 88 50.0
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 5.7e-14 82.4 88 50.0
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 7.4e-14 82.0 92 47.8
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 7.4e-14 82.0 56 69.6
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 9.6e-14 81.6 68 58.8
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 1.6e-13 80.9 64 60.9
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 1.6e-13 80.9 124 45.2
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 1.1e-12 78.2 103 38.8
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 3.8e-10 69.7 52 71.2
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.9e-09 67.4 249 26.5
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 1.8e-07 60.8 42 69.0
RcHm_v2.0_Chr6g0257511 Rosa chinensis HOM05D004481 ORTHO05D005350 3.0e-07 60.1 53 60.4
QL04p003183 Quercus lobata HOM05D001978 ORTHO05D003036 3.9e-07 59.7 45 68.9
Cc02_g34080 Coffea canephora HOM05D004481 ORTHO05D005350 5.1e-07 59.3 40 70.0
Cc01_g02920 Coffea canephora HOM05D004481 ORTHO05D005350 2.5e-06 57.0 42 64.3
VMungo1309G0877 Vigna mungo HOM05D000050 ORTHO05D000380 3.3e-06 56.6 44 61.4


User provided reference genes

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