Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G2099 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.8e-90 335.9 167 100.0
FvH4_7g00320 Fragaria vesca HOM05D000034 ORTHO05D000277 5.8e-49 198.0 217 56.7
FAN24G2067 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.9e-47 193.0 202 57.9
FAN21G1005 Fragaria x ananassa HOM05D000034 ORTHO05D000277 6.3e-43 177.9 189 56.6
FAN12G3067 Fragaria x ananassa HOM05D000034 ORTHO05D000277 5.9e-41 171.4 225 51.6
FAN22G1985 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.3e-40 170.2 202 52.5
FvH4_1g22560 Fragaria vesca HOM05D000034 ORTHO05D000037 2.7e-38 162.5 193 52.8
FvH4_2g09412 Fragaria vesca HOM05D000034 ORTHO05D000277 1.1e-36 157.1 169 56.8
FvH4_4g15171 Fragaria vesca HOM05D000034 ORTHO05D000277 1.1e-34 150.6 168 55.4
FAN11G0226 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.4e-34 150.2 217 47.5
FAN24G1441 Fragaria x ananassa HOM05D000034 ORTHO05D000277 5.3e-34 148.3 163 58.3
FAN12G0701 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.2e-32 142.9 183 50.3
FvH4_7g11552 Fragaria vesca HOM05D000034 ORTHO05D000277 6.5e-32 141.4 202 46.5
FAN25G0666 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.9e-31 139.8 206 43.2
FAN25G0710 Fragaria x ananassa HOM05D000034 ORTHO05D000277 5.5e-31 138.3 203 43.3
FAN17G1994 Fragaria x ananassa HOM05D000034 ORTHO05D000277 6.1e-30 134.8 148 55.4
FAN28G1917 Fragaria x ananassa HOM05D000034 ORTHO05D000277 7.9e-30 134.4 203 42.9
FvH4_2g07610 Fragaria vesca HOM05D000034 ORTHO05D000277 3.0e-29 132.5 148 52.0
FAN03G2645 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.1e-28 130.6 201 45.3
FAN21G2311 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.6e-28 129.4 104 65.4
FAN20G0414 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.3e-27 127.1 148 54.7
FAN05G0075 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.7e-27 126.7 211 41.7
FAN04G3245 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.7e-27 125.6 198 43.4
FAN26G2259 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.7e-27 125.6 97 71.1
FAN17G0070 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.4e-26 123.6 202 41.6
RcHm_v2.0_Chr1g0373591 Rosa chinensis HOM05D000034 ORTHO05D000277 1.8e-26 123.2 199 41.7
FvH4_2g04031 Fragaria vesca HOM05D000034 ORTHO05D000277 3.1e-26 122.5 206 40.8
FvH4_1g18411 Fragaria vesca HOM05D000034 ORTHO05D000277 5.3e-26 121.7 200 41.0
FAN09G3387 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.3e-24 117.1 103 58.3
FAN26G0732 Fragaria x ananassa HOM05D000034 ORTHO05D000277 5.0e-24 115.2 199 41.7
FAN02G4058 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.8e-21 106.7 127 52.0
FAN13G2412 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.3e-21 106.3 195 40.5
FAN25G0466 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.9e-21 105.5 202 36.6
CANSAT25G0805 Cannabis sativa HOM05D000034 ORTHO05D000277 1.1e-20 104.0 208 33.7
FAN15G3165 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.0e-20 103.2 199 40.2
FAN09G0780 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.3e-19 100.5 139 50.4
FAN02G0050 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.2e-19 99.8 149 45.0
CANSAT11G0741 Cannabis sativa HOM05D000034 ORTHO05D000277 3.7e-19 99.0 193 34.7
FvH4_1g24290 Fragaria vesca HOM05D000034 ORTHO05D000277 4.8e-19 98.6 141 47.5
FAN08G2368 Fragaria x ananassa HOM05D000034 ORTHO05D000277 6.3e-19 98.2 149 44.3
FAN22G0450 Fragaria x ananassa HOM05D000034 ORTHO05D000277 6.3e-19 98.2 149 44.3
CANSAT21G0305 Cannabis sativa HOM05D000034 ORTHO05D000277 8.2e-19 97.8 203 33.5
FAN08G3309 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.4e-18 96.3 188 37.2
FAN09G0335 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.4e-18 96.3 202 37.1
MD10G1011200 Malus domestica HOM05D000034 ORTHO05D000277 4.1e-18 95.5 223 31.8
FvH4_3g30720 Fragaria vesca HOM05D000034 ORTHO05D000277 2.0e-17 93.2 129 39.5
FAN14G0405 Fragaria x ananassa HOM05D000034 ORTHO05D000277 7.7e-17 91.3 156 46.2
FAN20G1514 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.7e-16 90.1 157 36.3
FvH4_3g15552 Fragaria vesca HOM05D000034 ORTHO05D000277 2.9e-16 89.4 102 49.0
FAN26G2222 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.5e-15 86.3 77 68.8
FAN28G1335 Fragaria x ananassa HOM05D000034 ORTHO05D000277 7.2e-15 84.7 139 43.9
CANSAT64G1464 Cannabis sativa HOM05D000034 ORTHO05D000277 4.7e-14 82.0 91 46.2
FAN11G4007 Fragaria x ananassa HOM05D000034 ORTHO05D000277 4.7e-14 82.0 80 57.5
FAN17G0186 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.8e-13 80.1 161 36.6
FAN08G2786 Fragaria x ananassa HOM05D000034 ORTHO05D000277 5.2e-13 78.6 85 45.9
FAN15G0012 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.5e-12 77.0 53 79.2
FAN21G1928 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.6e-12 76.3 53 79.2
FAN17G0198 Fragaria x ananassa HOM05D000034 ORTHO05D000277 7.5e-12 74.7 45 80.0
Atru.chr2.2599 Acer truncatum HOM05D000034 ORTHO05D000277 9.7e-12 74.3 105 41.9
FAN03G2701 Fragaria x ananassa HOM05D000034 ORTHO05D000277 9.7e-12 74.3 105 44.8
FAN05G4941 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.8e-11 72.8 114 47.4
FAN21G0681 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.7e-11 72.4 55 72.7
Atru.chr6.1585 Acer truncatum HOM05D000034 ORTHO05D000277 4.8e-11 72.0 95 40.0
FAN21G0385 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.1e-10 70.9 131 35.9
Hma1.2p1_0127F.1_g059736 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 3.1e-10 69.3 103 35.0
Hma1.2p1_0286F.1_g113985 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 3.1e-10 69.3 103 35.0
FvH4_4g09541 Fragaria vesca HOM05D000034 ORTHO05D000277 9.1e-10 67.8 158 32.9
FAN24G3369 Fragaria x ananassa HOM05D000034 ORTHO05D000277 9.1e-10 67.8 125 39.2
Hma1.2p1_0035F.1_g021910 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 9.1e-10 67.8 103 34.0
Hma1.2p1_0276F.1_g111440 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.6e-09 67.0 103 35.0
Hma1.2p1_0354F.1_g133450 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.7e-09 66.2 103 33.0
QL01p014514 Quercus lobata HOM05D000034 ORTHO05D000277 3.5e-09 65.9 135 31.1
SGA_v2.0_scaffold84G26487 Striga asiatica HOM05D000034 ORTHO05D000277 1.0e-08 64.3 110 39.1
Hma1.2p1_0746F.1_g212360 Hydrangea macrophylla HOM05D000454 ORTHO05D000591 1.3e-08 63.9 103 33.0
Hma1.2p1_0846F.1_g227800 Hydrangea macrophylla HOM05D000454 ORTHO05D000591 1.3e-08 63.9 103 33.0
RcHm_v2.0_Chr7g0219611 Rosa chinensis HOM05D000034 ORTHO05D000277 1.3e-08 63.9 48 72.9
CSS0021233 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 2.9e-08 62.8 177 30.5
FAN16G3514 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.8e-08 62.4 88 37.5
Rhsim03G0108500 Rhododendron simsii HOM05D000034 ORTHO05D000277 3.8e-08 62.4 141 30.5
CSS0028844 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 6.5e-08 61.6 104 35.6
CSS0036649 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 6.5e-08 61.6 87 40.2
CSS0047009 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 6.5e-08 61.6 87 40.2
Hma1.2p1_0664F.1_g199003 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 6.5e-08 61.6 176 29.5
Actinidia03627 Actinidia chinensis HOM05D000034 ORTHO05D000277 8.5e-08 61.2 181 27.6
Hma1.2p1_0489F.1_g164000 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 8.5e-08 61.2 178 25.3
Rhsim07G0014400 Rhododendron simsii HOM05D000034 ORTHO05D000277 8.5e-08 61.2 141 30.5
SGA_v2.0_scaffold122G33229 Striga asiatica HOM05D000034 ORTHO05D000277 1.1e-07 60.8 113 35.4
Atru.chr4.508 Acer truncatum HOM05D000034 ORTHO05D000277 1.5e-07 60.5 97 32.0
Hma1.2p1_0081F.1_g042220 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.5e-07 60.5 122 29.5
Hma1.2p1_0423F.1_g150230 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.9e-07 60.1 126 30.2
SGA_v2.0_scaffold17G08100 Striga asiatica HOM05D000034 ORTHO05D000277 1.9e-07 60.1 110 37.3
SGA_v2.0_scaffold283G47003 Striga asiatica HOM05D000034 ORTHO05D000277 1.9e-07 60.1 110 37.3
Sed0003532 Sechium edule HOM05D001651 ORTHO05D000277 2.5e-07 59.7 87 36.8
MD15G1289200 Malus domestica HOM05D000034 ORTHO05D000277 3.2e-07 59.3 95 31.6
Hma1.2p1_0026F.1_g016610 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 7.2e-07 58.2 180 27.8
Rhsim02G0110600 Rhododendron simsii HOM05D000034 ORTHO05D000277 9.4e-07 57.8 97 35.1
FAN16G1617 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.2e-06 57.4 94 36.2
Actinidia17901 Actinidia chinensis HOM05D000034 ORTHO05D000277 1.6e-06 57.0 98 34.7
MELO3C032795.2 Cucumis melo HOM05D001651 ORTHO05D000277 1.6e-06 57.0 117 34.2
Hma1.2p1_1761F.1_g301340 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.6e-06 57.0 180 28.9
DCAR_009785 Daucus carota HOM05D001651 ORTHO05D000277 2.1e-06 56.6 86 38.4
DCAR_015799 Daucus carota HOM05D001651 ORTHO05D000277 2.1e-06 56.6 86 38.4
Hma1.2p1_0890F.1_g233020 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.1e-06 56.6 97 36.1
Lj5g0001459 Lotus japonicus HOM05D000034 ORTHO05D000277 2.1e-06 56.6 88 34.1
Lj5g0006139 Lotus japonicus HOM05D000034 ORTHO05D000277 2.1e-06 56.6 88 34.1
Thecc.09G268100 Theobroma cacao HOM05D000034 ORTHO05D000277 2.1e-06 56.6 99 31.3
Actinidia26110 Actinidia chinensis HOM05D000034 ORTHO05D000277 2.7e-06 56.2 119 27.7
FvH4_2g04811 Fragaria vesca HOM05D000034 ORTHO05D000277 2.7e-06 56.2 160 29.4
Hma1.2p1_0563F.1_g179070 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 2.7e-06 56.2 146 30.1
Hma1.2p1_0896F.1_g233910 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.7e-06 56.2 84 36.9
Hma1.2p1_1104F.1_g257520 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.7e-06 56.2 95 34.7
LjContig00357g0019659 Lotus japonicus HOM05D000034 ORTHO05D000277 2.7e-06 56.2 88 34.1
Thecc.05G132700 Theobroma cacao HOM05D001651 ORTHO05D000277 2.7e-06 56.2 90 34.4
COL.COLO4_28291 Corchorus olitorius HOM05D000034 ORTHO05D000277 3.6e-06 55.8 89 33.7
FAN08G2078 Fragaria x ananassa HOM05D011794 ORTHO05D000277 3.6e-06 55.8 162 33.3
FAN13G2115 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.6e-06 55.8 29 72.4
Hma1.2p1_2091F.1_g313856 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 3.6e-06 55.8 131 29.8
Lj1g0021510 Lotus japonicus HOM05D000034 ORTHO05D000277 3.6e-06 55.8 102 33.3
MELO3C028455.2 Cucumis melo HOM05D001651 ORTHO05D000277 4.7e-06 55.5 117 34.2
MELO3C031504.2 Cucumis melo HOM05D001651 ORTHO05D000277 4.7e-06 55.5 117 32.5
FAN06G3685 Fragaria x ananassa HOM05D000034 ORTHO05D000277 4.7e-06 55.5 52 59.6
FAN09G4862 Fragaria x ananassa HOM05D000034 ORTHO05D000277 4.7e-06 55.5 52 59.6
Hma1.2p1_2043F.1_g312310 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 4.7e-06 55.5 180 27.2
Hma1.2p1_2109F.1_g314220 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 4.7e-06 55.5 108 32.4
RhsimUnG0197200 Rhododendron simsii HOM05D000034 ORTHO05D000277 4.7e-06 55.5 143 30.1
Hma1.2p1_0170F.1_g074960 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 6.1e-06 55.1 95 32.6
Hma1.2p1_0189F.1_g082820 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 6.1e-06 55.1 180 27.8
Hma1.2p1_0354F.1_g133500 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 6.1e-06 55.1 157 29.9
Hma1.2p1_1398F.1_g280820 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 6.1e-06 55.1 95 32.6
Lj6g0017267 Lotus japonicus HOM05D000034 ORTHO05D000277 6.1e-06 55.1 95 33.7
Nn1g01000 Nelumbo nucifera HOM05D001651 ORTHO05D000277 6.1e-06 55.1 133 29.3
Atru.chr12.1422 Acer truncatum HOM05D000034 ORTHO05D000037 8.0e-06 54.7 152 28.9
Atru.chr4.1088 Acer truncatum HOM05D000034 ORTHO05D000037 8.0e-06 54.7 86 33.7
Atru.chr6.616 Acer truncatum HOM05D000034 ORTHO05D000037 8.0e-06 54.7 86 33.7
Actinidia06690 Actinidia chinensis HOM05D000034 ORTHO05D000277 8.0e-06 54.7 104 30.8
Dinv06216 Davidia involucrata HOM05D000034 ORTHO05D000277 8.0e-06 54.7 84 34.5
FAN28G0140 Fragaria x ananassa HOM05D002788 ORTHO05D025609 8.0e-06 54.7 98 32.7
FAN28G0483 Fragaria x ananassa HOM05D002788 ORTHO05D025609 8.0e-06 54.7 98 32.7
Hma1.2p1_0386F.1_g141750 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 8.0e-06 54.7 86 36.0
Hma1.2p1_1184F.1_g264860 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 8.0e-06 54.7 91 34.1
Sed0003700 Sechium edule HOM05D000034 ORTHO05D000277 8.0e-06 54.7 86 38.4


User provided reference genes

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