Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G2044 Fragaria x ananassa HOM05D007231 ORTHO05D009024 4.3e-167 591.3 300 100.0
FAN27G1680 Fragaria x ananassa HOM05D007231 ORTHO05D009024 2.1e-134 482.6 301 85.4
FvH4_2g23810 Fragaria vesca HOM05D007231 ORTHO05D009024 1.5e-127 459.9 301 82.7
RcHm_v2.0_Chr6g0291381 Rosa chinensis HOM05D007231 ORTHO05D009024 5.1e-120 434.9 302 78.5
Prupe.8G243400 Prunus persica HOM05D007231 ORTHO05D009024 3.9e-96 355.5 302 66.9
MD11G1288600 Malus domestica HOM05D007231 ORTHO05D009024 1.0e-91 340.9 302 62.9
CiPaw.08G104200 Carya illinoinensis HOM05D007231 ORTHO05D009024 1.1e-85 320.9 302 58.9
Atru.chr5.1389 Acer truncatum HOM05D007231 ORTHO05D009024 7.0e-85 318.2 302 58.3
QL12p022281 Quercus lobata HOM05D007231 ORTHO05D009024 1.6e-84 317.0 300 59.3
Cfa006118 Carpinus fangiana HOM05D007231 ORTHO05D009024 1.7e-83 313.5 306 56.5
GSVIVG01011110001 Vitis vinifera HOM05D007231 ORTHO05D009024 1.7e-83 313.5 299 57.9
Actinidia00741 Actinidia chinensis HOM05D007231 ORTHO05D009024 3.2e-82 309.3 302 58.3
TAR365G1202 Trochodendron aralioides HOM05D007231 ORTHO05D009024 3.6e-81 305.8 302 56.3
Dinv11248 Davidia involucrata HOM05D007231 ORTHO05D009024 6.1e-81 305.1 301 57.5
Nn1g02166 Nelumbo nucifera HOM05D007231 ORTHO05D009024 6.1e-81 305.1 301 57.5
COL.COLO4_09128 Corchorus olitorius HOM05D007231 ORTHO05D009024 8.0e-81 304.7 302 57.3
TAR636G3122 Trochodendron aralioides HOM05D007231 ORTHO05D009024 1.0e-80 304.3 302 56.6
Duzib211G0396 Durio zibethinus HOM05D007231 ORTHO05D009024 1.8e-80 303.5 302 56.3
CANSAT25G1925 Cannabis sativa HOM05D007231 ORTHO05D009024 3.0e-80 302.8 302 56.6
Actinidia09146 Actinidia chinensis HOM05D007231 ORTHO05D009024 2.0e-79 300.1 302 57.0
Thecc.01G282400 Theobroma cacao HOM05D007231 ORTHO05D009024 2.0e-79 300.1 302 56.0
Ciclev10021857m.g Citrus clementina HOM05D007231 ORTHO05D009024 3.3e-79 299.3 302 55.0
Manes.05G074400 Manihot esculenta HOM05D007231 ORTHO05D009024 9.7e-79 297.7 302 57.0
THA.LOC104801225 Tarenaya hassleriana HOM05D007231 ORTHO05D009024 1.7e-78 297.0 302 57.0
Lj5g0005680 Lotus japonicus HOM05D007231 ORTHO05D009024 2.8e-78 296.2 290 57.2
CAN.G609.11 Capsicum annuum HOM05D007231 ORTHO05D009024 3.7e-78 295.8 302 55.3
Sopen09g026640 Solanum pennellii HOM05D007231 ORTHO05D009024 1.1e-77 294.3 302 55.0
CsaV3_7G028660 Cucumis sativus L. HOM05D007231 ORTHO05D009024 1.8e-77 293.5 302 55.3
Solyc09g064930.3 Solanum lycopersicum HOM05D007231 ORTHO05D009024 1.8e-77 293.5 302 54.6
Gohir.D08G077400 Gossypium hirsutum HOM05D007231 ORTHO05D009024 3.1e-77 292.7 302 55.6
Rhsim13G0023500 Rhododendron simsii HOM05D007231 ORTHO05D009024 3.1e-77 292.7 302 55.6
Peaxi162Scf00570g00058 Petunia axillaris HOM05D007231 ORTHO05D009024 4.1e-77 292.4 302 55.0
Dinv32951 Davidia involucrata HOM05D007231 ORTHO05D009024 5.3e-77 292.0 305 55.7
Nitab4.5_0001028g0140 Nicotiana tabacum HOM05D007231 ORTHO05D009024 7.0e-77 291.6 303 55.4
arahy.Tifrunner.gnm1.ann1.9UA39Y Arachis hypogaea HOM05D007231 ORTHO05D009024 9.1e-77 291.2 302 56.3
arahy.Tifrunner.gnm1.ann1.LJDI86 Arachis hypogaea HOM05D007231 ORTHO05D009024 9.1e-77 291.2 302 56.3
MELO3C015851.2 Cucumis melo HOM05D007231 ORTHO05D009024 9.1e-77 291.2 302 55.3
Gorai.004G082300 Gossypium raimondii HOM05D007231 ORTHO05D009024 2.0e-76 290.0 302 55.3
Cpa.g.sc64.168 Carica papaya HOM05D007231 ORTHO05D009024 3.5e-76 289.3 300 53.3
Gohir.A08G069100 Gossypium hirsutum HOM05D007231 ORTHO05D009024 1.3e-75 287.3 301 54.8
Lalb_Chr06g0163091 Lupinus albus HOM05D007231 ORTHO05D009024 1.3e-75 287.3 295 54.9
Phvul.007G170300 Phaseolus vulgaris HOM05D007231 ORTHO05D009024 1.3e-75 287.3 298 55.7
Sabra19G0055900 Salix brachista HOM05D007231 ORTHO05D009024 1.3e-75 287.3 302 56.0
Glyma.10G025400 Glycine max HOM05D007231 ORTHO05D009024 2.9e-75 286.2 297 55.2
MBI19_g24716_MAGBIO Magnolia biondii HOM05D007231 ORTHO05D009024 3.8e-75 285.8 298 53.4
Eucgr.K03384 Eucalyptus grandis HOM05D007231 ORTHO05D009024 1.5e-74 283.9 292 53.8
Potri.019G046400 Populus trichocarpa HOM05D007231 ORTHO05D009024 4.2e-74 282.3 303 54.8
Lalb_Chr02g0142831 Lupinus albus HOM05D007231 ORTHO05D009024 1.6e-73 280.4 295 53.9
Nitab4.5_0002386g0100 Nicotiana tabacum HOM05D002055 ORTHO05D009024 6.1e-73 278.5 300 54.0
vmacro02556 Vaccinium macrocarpon HOM05D007231 ORTHO05D009024 6.1e-73 278.5 302 54.3
Cc01_g19680 Coffea canephora HOM05D007231 ORTHO05D009024 1.8e-72 276.9 301 53.2
Aa31LG1G9290 Aethionema arabicum HOM05D007231 ORTHO05D009024 2.3e-72 276.6 303 54.1
PSO210G0158 Papaver somniferum HOM05D007231 ORTHO05D009024 2.3e-72 276.6 303 52.8
SalBow4G2275 Salvia bowleyana HOM05D007231 ORTHO05D009024 5.2e-72 275.4 302 52.3
Oeu015959.1 Olea europaea HOM05D007231 ORTHO05D009024 6.8e-72 275.0 274 54.7
Medtr1g072510 Medicago truncatula HOM05D007231 ORTHO05D009024 8.8e-72 274.6 278 55.8
Ca_09766_v3 Cicer arietinum L. HOM05D002055 ORTHO05D002120 1.2e-71 274.2 295 53.2
Migut.D00275 Erythranthe guttata HOM05D007231 ORTHO05D009024 3.4e-71 272.7 304 51.6
Psat6g125920 Pisum sativum HOM05D007231 ORTHO05D009024 4.4e-71 272.3 291 54.6
BcaC05g24551 Brassica carinata HOM05D007231 ORTHO05D009024 5.7e-71 271.9 301 52.8
Lj2C1175G18 Lonicera japonica HOM05D007231 ORTHO05D009024 7.5e-71 271.6 365 47.7
BolC5t28956H Brassica oleracea HOM05D007231 ORTHO05D009024 2.2e-70 270.0 300 53.3
Aqoxy2G03271 Aquilegia oxysepala HOM05D007231 ORTHO05D009024 2.8e-70 269.6 297 52.9
BcaC05g24637 Brassica carinata HOM05D007231 ORTHO05D009024 2.8e-70 269.6 300 53.0
Oeu022878.1 Olea europaea HOM05D007231 ORTHO05D009024 2.8e-70 269.6 274 54.0
AL1G12740 Arabidopsis lyrata HOM05D007231 ORTHO05D009024 4.8e-70 268.9 302 53.0
AT1G03250 Arabidopsis thaliana HOM05D007231 ORTHO05D009024 8.3e-70 268.1 302 52.3
A10p01800 Brassica napus HOM05D007231 ORTHO05D009024 1.1e-69 267.7 300 52.7
Hund05352 Selenicereus undatus HOM05D007231 ORTHO05D009024 3.1e-69 266.2 302 52.3
BraA10t42455Z Brassica rapa HOM05D007231 ORTHO05D009024 9.1e-69 264.6 300 52.0
Sp1g02240 Schrenkiella parvula HOM05D007231 ORTHO05D009024 1.6e-68 263.8 303 51.8
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 2.0e-68 263.5 270 54.8
MSTRG.18222 Avicennia marina HOM05D007231 ORTHO05D009024 2.7e-68 263.1 303 50.5
CARHR002550 Cardamine hirsuta HOM05D007231 ORTHO05D009024 2.7e-68 263.1 303 52.1
Thhalv10008549m.g Eutrema salsugineum HOM05D007231 ORTHO05D009024 5.9e-68 261.9 306 51.0
HanXRQChr11g0327631 Helianthus annuus HOM05D007231 ORTHO05D009024 7.7e-68 261.5 300 50.7
HanXRQChr01g0002311 Helianthus annuus HOM05D007231 ORTHO05D009024 1.3e-67 260.8 301 50.5
C05p01780 Brassica napus HOM05D007231 ORTHO05D009024 2.2e-67 260.0 311 50.8
Carub.0001s0236 Capsella rubella HOM05D007231 ORTHO05D009024 1.1e-66 257.7 302 50.7
AUR62036799 Chenopodium quinoa HOM05D007231 ORTHO05D009024 1.9e-66 256.9 328 46.3
EL10Ac7g17220 Beta vulgaris HOM05D007231 ORTHO05D009024 7.2e-66 255.0 346 46.2
Lsat_1_v5_gn_5_190100 Lactuca sativa HOM05D007231 ORTHO05D009024 4.7e-65 252.3 300 48.3
Sed0024964 Sechium edule HOM05D002055 ORTHO05D002120 1.8e-64 250.4 285 51.6
TWI14G0923 Tripterygium wilfordii HOM05D002055 ORTHO05D002120 3.4e-63 246.1 252 56.0
Duzib138G1636 Durio zibethinus HOM05D007231 ORTHO05D009024 5.7e-63 245.4 302 50.0
SGA_v2.0_scaffold11G05804 Striga asiatica HOM05D002055 ORTHO05D002120 1.3e-62 244.2 311 46.6
CDE04G0796 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 2.2e-62 243.4 290 47.9
ECA248G0248 Erigeron canadensis HOM05D002055 ORTHO05D002120 2.2e-62 243.4 297 49.8
SGA_v2.0_scaffold1G00456 Striga asiatica HOM05D007231 ORTHO05D009024 2.4e-61 240.0 302 47.0
Os11g0147100 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 2.3e-59 233.4 298 44.6
ClCG09G006940 Citrullus lanatus HOM05D002055 ORTHO05D002120 8.6e-59 231.5 251 53.8
PGR044G2216 Punica granatum HOM05D007231 ORTHO05D009024 8.6e-59 231.5 238 54.2
CSS0040014 Camellia sinensis var. sinensis HOM05D007231 ORTHO05D009024 1.2e-57 227.6 239 54.4
Zm00001eb342980 Zea mays HOM05D007231 ORTHO05D009024 1.6e-57 227.3 295 44.7
Os12g0144000 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 2.1e-57 226.9 296 44.3
Ciclev10022442m.g Citrus clementina HOM05D007231 ORTHO05D009024 5.2e-56 222.2 238 52.1
unitig_0.g109 Utricularia gibba HOM05D007231 ORTHO05D009024 5.7e-55 218.8 263 47.5
ATR0626G005 Amborella trichopoda HOM05D007231 ORTHO05D009024 9.8e-55 218.0 275 46.2
Zm00001eb196600 Zea mays HOM05D007231 ORTHO05D009024 9.2e-53 211.5 299 43.5
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 1.2e-49 201.1 250 48.4
AUR62039907 Chenopodium quinoa HOM05D007231 ORTHO05D009024 3.6e-41 172.9 201 50.2
Sc05g0004910 Simmondsia chinensis HOM05D007231 ORTHO05D009024 1.7e-38 164.1 214 46.3
TPR.G19967 Trifolium pratense HOM05D007231 ORTHO05D009024 3.0e-35 153.3 122 63.9
Mapoly0057s0044 Marchantia polymorpha HOM05D007231 ORTHO05D009024 2.7e-28 130.2 222 37.4
SEGI_15193 Sequoiadendron giganteum HOM05D007231 ORTHO05D009024 4.6e-28 129.4 267 34.8
SMO170G0043 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 1.9e-18 97.4 275 30.2
SMO137G0298 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 3.3e-18 96.7 257 31.1
AagrBONN_evm.TU.Sc2ySwM_117.667 Anthoceros agrestis HOM05D007231 ORTHO05D009024 1.4e-16 91.3 208 30.3
Cc01_g19320 Coffea canephora HOM05D007231 ORTHO05D009024 1.5e-15 87.8 127 43.3
Pp3c4_28170 Physcomitrium patens HOM05D007231 ORTHO05D009024 5.8e-15 85.9 262 26.0
MCO13G326 Micromonas commoda HOM05D007231 ORTHO05D009024 7.1e-13 79.0 238 27.7
TPR.G24733 Trifolium pratense HOM05D007231 ORTHO05D009024 1.2e-12 78.2 61 67.2
BcaC05g24635 Brassica carinata HOM05D007231 ORTHO05D009024 6.0e-12 75.9 86 50.0
Cre01.g040100 Chlamydomonas reinhardtii HOM05D007231 ORTHO05D009024 1.8e-11 74.3 231 25.5
CDE02G2493 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 1.9e-10 70.9 67 53.7
CDE02G1070 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 1.6e-09 67.8 136 34.6


User provided reference genes

Program Settings