Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 9.4e-49 198.0 268 100.0
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.7e-45 186.0 268 98.1
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 1.2e-43 181.0 270 97.4
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.6e-43 179.9 268 95.9
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.1e-41 174.5 272 95.2
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 4.7e-40 169.1 267 87.3
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 2.2e-34 150.2 251 86.1
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 5.0e-34 149.1 251 88.4
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 8.8e-31 138.3 267 80.5
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 5.7e-30 135.6 250 81.2
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 7.5e-30 135.2 264 75.8
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 9.7e-30 134.8 251 84.5
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 2.8e-29 133.3 251 83.3
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 6.3e-29 132.1 251 78.5
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 8.3e-29 131.7 251 78.9
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 8.3e-29 131.7 251 78.9
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 1.1e-28 131.3 251 78.9
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 2.4e-28 130.2 251 82.9
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 3.1e-28 129.8 249 83.1
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 9.1e-28 128.3 251 77.7
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 9.1e-28 128.3 251 77.7
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.6e-27 127.5 266 79.7
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 1.0e-26 124.8 264 82.2
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 1.0e-26 124.8 252 80.2
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 1.3e-26 124.4 267 74.2
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 1.7e-26 124.0 251 73.3
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 5.0e-26 122.5 262 77.1
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.1e-25 121.3 266 79.7
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 3.2e-25 119.8 254 81.5
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 4.2e-25 119.4 251 82.1
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 4.2e-25 119.4 267 75.7
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 5.5e-25 119.0 248 77.8
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 7.2e-25 118.6 253 78.3
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 7.2e-25 118.6 253 68.4
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 9.4e-25 118.2 252 77.0
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 1.2e-24 117.9 252 82.1
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 1.2e-24 117.9 253 81.4
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 2.7e-24 116.7 253 74.7
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 6.1e-24 115.5 252 78.2
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 2.3e-23 113.6 267 76.8
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 5.2e-23 112.5 254 75.6
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 5.2e-23 112.5 267 75.3
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.2e-22 111.3 266 78.6
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 3.4e-22 109.8 270 77.4
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 2.2e-21 107.1 268 78.0
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 3.7e-21 106.3 253 74.7
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 3.7e-21 106.3 268 79.5
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 4.8e-21 105.9 264 75.8
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 1.1e-20 104.8 251 78.9
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 1.1e-20 104.8 244 80.7
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 1.4e-20 104.4 258 70.5
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 3.1e-20 103.2 251 78.5
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 5.4e-20 102.4 251 76.9
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 7.0e-20 102.1 268 71.6
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 9.1e-20 101.7 267 71.9
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 1.2e-19 101.3 251 74.9
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 1.2e-19 101.3 251 76.1
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 3.5e-19 99.8 267 76.0
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 1.7e-18 97.4 273 73.6
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 2.3e-18 97.1 247 70.4
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 6.6e-18 95.5 267 74.9
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 8.6e-18 95.1 249 77.9
Duzib132G0628 Durio zibethinus HOM05D004463 ORTHO05D004724 1.1e-17 94.7 235 81.3
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 1.5e-17 94.4 277 75.5
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 3.3e-17 93.2 222 84.7
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 4.2e-17 92.8 53 79.2
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 7.2e-17 92.0 69 69.6
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.6e-16 90.9 268 76.9
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 8.0e-16 88.6 53 77.4
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 1.4e-15 87.8 70 75.7
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 3.0e-15 86.7 268 69.4
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 3.0e-15 86.7 67 74.6
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.5e-14 84.3 250 72.8
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 5.7e-14 82.4 264 75.4
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 5.7e-14 82.4 53 71.7
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 1.7e-13 80.9 53 69.8
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 3.7e-13 79.7 70 65.7
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 8.3e-13 78.6 53 69.8
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 8.3e-13 78.6 53 69.8
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 8.3e-13 78.6 53 69.8
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 8.3e-13 78.6 250 79.6
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 1.4e-12 77.8 67 67.2
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 1.4e-12 77.8 56 67.9
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 1.4e-12 77.8 53 67.9
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 2.4e-12 77.0 52 67.3
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 2.4e-12 77.0 53 67.9
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 4.1e-12 76.3 50 72.0
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 7.0e-12 75.5 52 65.4
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 7.0e-12 75.5 52 65.4
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 9.2e-12 75.1 70 64.3
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 1.2e-11 74.7 53 66.0
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 1.2e-11 74.7 53 67.9
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 2.7e-11 73.6 52 67.3
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 4.5e-11 72.8 71 64.8
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 4.5e-11 72.8 52 67.3
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 5.9e-11 72.4 249 73.5
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 1.0e-10 71.6 53 60.4
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 1.3e-10 71.2 56 60.7
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 1.7e-10 70.9 51 66.7
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 2.3e-10 70.5 52 63.5
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 2.3e-10 70.5 52 63.5
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 2.3e-10 70.5 53 60.4
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 2.9e-10 70.1 251 78.9
CSS0016875 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 3.9e-10 69.7 242 73.6
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 6.6e-10 68.9 47 68.1
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 6.6e-10 68.9 48 68.8
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 1.1e-09 68.2 54 61.1
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 1.5e-09 67.8 53 58.5
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 1.5e-09 67.8 53 58.5
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 1.9e-09 67.4 52 61.5
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 1.9e-09 67.4 48 66.7
TWI75G1243 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 1.9e-09 67.4 275 60.0
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 2.5e-09 67.0 53 60.4
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 9.5e-09 65.1 53 56.6
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 1.6e-08 64.3 53 56.6
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 2.8e-08 63.5 51 62.7
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 3.6e-08 63.2 74 54.1
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 6.1e-08 62.4 45 62.2
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 1.0e-07 61.6 54 57.4
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 1.8e-07 60.8 46 60.9
MBI19_g03564_MAGBIO Magnolia biondii HOM05D004463 ORTHO05D004724 2.3e-07 60.5 231 75.3
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 3.1e-07 60.1 67 52.2
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 3.1e-07 60.1 49 53.1
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 5.2e-07 59.3 58 51.7
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 5.2e-07 59.3 54 57.4
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 5.2e-07 59.3 51 60.8
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 5.2e-07 59.3 51 60.8
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 8.9e-07 58.5 54 55.6
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 8.9e-07 58.5 53 50.9
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.2e-06 58.2 70 47.1
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.5e-06 57.8 45 62.2
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 2.6e-06 57.0 54 51.9
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 3.4e-06 56.6 54 53.7
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 3.4e-06 56.6 54 53.7
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 4.4e-06 56.2 45 60.0
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 5.8e-06 55.8 42 61.9
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 5.8e-06 55.8 54 51.9


User provided reference genes

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