Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G1949 Fragaria x ananassa HOM05D006293 ORTHO05D007971 2.0e-171 605.9 359 100.0
FvH4_2g01740 Fragaria vesca HOM05D006293 ORTHO05D007971 4.8e-165 584.7 359 97.8
FAN24G1019 Fragaria x ananassa HOM05D006293 ORTHO05D007971 5.8e-163 577.8 362 96.4
FAN15G0431 Fragaria x ananassa HOM05D006293 ORTHO05D007971 9.9e-163 577.0 362 89.5
FAN27G2989 Fragaria x ananassa HOM05D006293 ORTHO05D007971 2.1e-160 569.3 360 94.4
RcHm_v2.0_Chr6g0244771 Rosa chinensis HOM05D006293 ORTHO05D007971 1.4e-145 520.0 359 86.9
Prupe.8G161400 Prunus persica HOM05D006293 ORTHO05D007971 6.7e-127 458.0 352 76.7
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 2.9e-122 442.6 350 80.0
QL11p047722 Quercus lobata HOM05D006293 ORTHO05D007971 1.8e-119 433.3 349 70.5
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 5.9e-115 418.3 351 67.0
CiPaw.05G077900 Carya illinoinensis HOM05D006293 ORTHO05D007971 3.0e-111 406.0 335 67.5
Haze_02189 Corylus avellana HOM05D006293 ORTHO05D007971 5.2e-111 405.2 351 66.7
Potri.004G169200 Populus trichocarpa HOM05D006293 ORTHO05D007971 2.0e-107 393.3 349 65.6
Rhsim11G0188600 Rhododendron simsii HOM05D006293 ORTHO05D007971 5.9e-107 391.7 357 63.0
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 7.7e-107 391.3 348 57.5
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 2.3e-106 389.8 352 62.5
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 2.3e-106 389.8 349 56.4
Glyma.04G005100 Glycine max HOM05D006293 ORTHO05D007971 6.6e-106 388.3 357 63.9
GSVIVG01024071001 Vitis vinifera HOM05D006293 ORTHO05D007971 8.6e-106 387.9 347 62.8
CANSAT25G1913 Cannabis sativa HOM05D006293 ORTHO05D007971 2.5e-105 386.3 349 68.2
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 4.2e-105 385.6 351 63.5
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 9.5e-105 384.4 353 64.3
VMungo1309G1166 Vigna mungo HOM05D006293 ORTHO05D007971 4.7e-104 382.1 350 61.7
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 1.4e-103 380.6 351 63.0
vmacro02255 Vaccinium macrocarpon HOM05D006293 ORTHO05D007971 1.8e-103 380.2 345 63.2
Ca_15314_v3 Cicer arietinum L. HOM05D006293 ORTHO05D007971 2.3e-103 379.8 351 59.3
Manes.11G090800 Manihot esculenta HOM05D006293 ORTHO05D007971 5.2e-103 378.6 350 62.6
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 6.8e-103 378.3 349 59.3
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 8.9e-103 377.9 352 71.6
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 2.0e-102 376.7 349 59.0
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 2.6e-102 376.3 345 67.8
CSS0030950 Camellia sinensis var. sinensis HOM05D006293 ORTHO05D007971 1.7e-101 373.6 351 63.5
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 4.9e-101 372.1 350 65.7
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 1.4e-100 370.5 348 64.7
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 1.4e-100 370.5 348 58.6
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 4.1e-100 369.0 349 62.5
Rhsim11G0188500 Rhododendron simsii HOM05D006293 ORTHO05D007971 1.2e-99 367.5 400 54.5
Medtr3g117760 Medicago truncatula HOM05D006293 ORTHO05D007971 3.9e-98 362.5 352 53.4
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.9e-97 360.1 350 52.3
Lj1g0023631 Lotus japonicus HOM05D006293 ORTHO05D007971 7.3e-97 358.2 350 62.6
TPR.G38570 Trifolium pratense HOM05D006293 ORTHO05D007971 9.5e-97 357.8 348 57.5
TAR628G0693 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.6e-96 357.1 365 52.9
Peaxi162Scf00362g00956 Petunia axillaris HOM05D001375 ORTHO05D001222 5.2e-95 352.1 350 56.0
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 6.8e-95 351.7 348 60.1
Cc02_g16450 Coffea canephora HOM05D006293 ORTHO05D007971 1.5e-94 350.5 347 55.9
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 4.4e-94 349.0 340 58.2
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 6.4e-93 345.1 346 60.7
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 8.3e-93 344.7 345 53.0
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 1.9e-92 343.6 348 49.4
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 2.4e-92 343.2 355 60.3
PGSC0003DMG400001627 Solanum tuberosum HOM05D006293 ORTHO05D007971 5.4e-92 342.0 349 55.3
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 2.0e-91 340.1 349 49.0
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 3.5e-91 339.3 354 55.9
Oeu014457.2 Olea europaea HOM05D006293 ORTHO05D007971 1.3e-90 337.4 364 54.4
Lalb_Chr23g0265081 Lupinus albus HOM05D006293 ORTHO05D007971 1.7e-90 337.0 352 59.4
Nn1g05912 Nelumbo nucifera HOM05D006293 ORTHO05D007971 1.7e-90 337.0 360 53.6
Migut.B00115 Erythranthe guttata HOM05D006293 ORTHO05D007971 1.9e-89 333.6 351 55.6
Sed0004865 Sechium edule HOM05D006293 ORTHO05D007971 7.3e-89 331.6 336 56.5
HanXRQChr17g0557851 Helianthus annuus HOM05D006293 ORTHO05D007971 1.2e-88 330.9 349 58.2
EL10Ac9g21428 Beta vulgaris HOM05D006293 ORTHO05D007971 3.4e-86 322.8 351 57.3
THA.LOC104804336 Tarenaya hassleriana HOM05D006293 ORTHO05D007971 5.8e-86 322.0 351 53.6
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 4.9e-85 318.9 365 50.7
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 5.4e-84 315.5 351 58.1
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 1.6e-83 313.9 349 49.6
Nitab4.5_0000980g0060 Nicotiana tabacum HOM05D001375 ORTHO05D001222 1.6e-83 313.9 348 53.2
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 4.6e-83 312.4 362 54.1
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 1.3e-82 310.8 347 52.2
Dinv41970 Davidia involucrata HOM05D006293 ORTHO05D007971 3.0e-82 309.7 305 52.8
PSO170G2363 Papaver somniferum HOM05D006293 ORTHO05D007971 5.1e-82 308.9 374 59.9
MELO3C020791.2 Cucumis melo HOM05D006293 ORTHO05D007971 6.6e-82 308.5 337 55.8
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 1.9e-81 307.0 352 51.4
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 4.3e-81 305.8 347 47.3
BcaC04g23011 Brassica carinata HOM05D006293 ORTHO05D007971 9.5e-81 304.7 359 54.3
BolC9t54199H Brassica oleracea HOM05D006293 ORTHO05D007971 9.5e-81 304.7 359 54.3
C09p13060 Brassica napus HOM05D006293 ORTHO05D007971 3.6e-80 302.8 359 54.0
BraA07t28238Z Brassica rapa HOM05D006293 ORTHO05D007971 3.6e-80 302.8 354 56.8
AL3G49260 Arabidopsis lyrata HOM05D006293 ORTHO05D007971 1.1e-79 301.2 352 58.2
BcaC06g36161 Brassica carinata HOM05D006293 ORTHO05D007971 1.1e-79 301.2 354 56.5
C07p07090 Brassica napus HOM05D006293 ORTHO05D007971 1.1e-79 301.2 354 56.5
BolC7t41128H Brassica oleracea HOM05D006293 ORTHO05D007971 1.1e-79 301.2 354 56.5
Sp3g30120 Schrenkiella parvula HOM05D006293 ORTHO05D007971 2.3e-79 300.1 354 61.3
AUR62010081 Chenopodium quinoa HOM05D006293 ORTHO05D007971 3.1e-79 299.7 346 48.0
A07p04460 Brassica napus HOM05D006293 ORTHO05D007971 5.2e-79 298.9 354 55.9
BraA09t36749Z Brassica rapa HOM05D006293 ORTHO05D007971 5.2e-79 298.9 354 57.9
A09p11050 Brassica napus HOM05D006293 ORTHO05D007971 6.8e-79 298.5 354 57.9
Carub.0003s3038 Capsella rubella HOM05D006293 ORTHO05D007971 3.4e-78 296.2 354 56.8
BcaB07g31757 Brassica carinata HOM05D006293 ORTHO05D007971 4.4e-78 295.8 353 58.4
AUR62013075 Chenopodium quinoa HOM05D006293 ORTHO05D007971 9.9e-78 294.7 346 48.0
Thhalv10022734m.g Eutrema salsugineum HOM05D006293 ORTHO05D007971 4.1e-76 289.3 374 58.3
PSO700G0292 Papaver somniferum HOM05D006293 ORTHO05D007971 9.2e-76 288.1 362 46.7
AT2G16630 Arabidopsis thaliana HOM05D006293 ORTHO05D007971 2.7e-75 286.6 368 51.1
MBI05_g07501_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 3.5e-75 286.2 346 44.2
MBI05_g47219_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.0e-74 284.6 346 44.5
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 1.7e-74 283.9 348 49.1
ECA233G0605 Erigeron canadensis HOM05D001375 ORTHO05D001222 3.0e-74 283.1 354 49.2
MBI05_g30117_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 5.1e-74 282.3 346 43.1
Aqoxy5G00988 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 1.9e-73 280.4 355 48.5
DCAR_003705 Daucus carota HOM05D006293 ORTHO05D007971 1.9e-73 280.4 360 49.7
Aa31LG8G13900 Aethionema arabicum HOM05D006293 ORTHO05D007971 7.3e-73 278.5 350 54.0
CsaV3_2G015780 Cucumis sativus L. HOM05D006293 ORTHO05D007971 8.4e-69 265.0 361 51.2
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 5.4e-68 262.3 338 50.6
MBI05_g48109_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.0e-66 258.1 346 42.2
HanXRQChr10g0298941 Helianthus annuus HOM05D006293 ORTHO05D007971 8.1e-64 248.4 358 43.3
Aqoxy1G01171 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 7.6e-62 241.9 294 53.4
HPP92_013009 Vanilla planifolia HOM05D006293 ORTHO05D007971 1.3e-61 241.1 339 41.6
unitig_0.g827 Utricularia gibba HOM05D006293 ORTHO05D007971 1.7e-61 240.7 333 45.9
MD10G1120000 Malus domestica HOM05D006293 ORTHO05D007971 4.9e-61 239.2 129 85.3
SEGI_19356 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 4.3e-57 226.1 357 45.7
BcaB03g16385 Brassica carinata HOM05D006293 ORTHO05D007971 9.6e-57 224.9 353 52.7
CDE05G1002 Ceratophyllum demersum HOM05D006293 ORTHO05D007971 1.6e-56 224.2 354 37.6
MD10G1120100 Malus domestica HOM05D006293 ORTHO05D007971 4.8e-56 222.6 127 81.9
unitig_0.g43 Utricularia gibba HOM05D006293 ORTHO05D007971 1.3e-53 214.5 347 36.9
PGR042G0330 Punica granatum HOM05D006293 ORTHO05D007971 4.9e-53 212.6 385 41.8
MSTRG.20014 Avicennia marina HOM05D006293 ORTHO05D007971 1.7e-45 187.6 151 61.6
MBI05_g21530_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.7e-45 187.6 269 39.4
SEGI_14996 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 1.6e-43 181.0 347 40.3
Gohir.1Z049391 Gossypium hirsutum HOM05D006293 ORTHO05D007971 2.8e-40 170.2 192 52.6
Nitab4.5_0000283g0050 Nicotiana tabacum HOM05D001375 ORTHO05D001222 3.1e-39 166.8 116 60.3
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 4.3e-33 146.4 152 47.4
Mapoly0014s0128 Marchantia polymorpha HOM05D006293 ORTHO05D007971 2.5e-28 130.6 357 32.5
Zm00001eb210030 Zea mays HOM05D006293 ORTHO05D007971 3.0e-26 123.6 138 46.4
Pp3c14_8250 Physcomitrium patens HOM05D006293 ORTHO05D007971 6.3e-24 115.9 332 27.7
Aqoxy6G00177 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 8.2e-24 115.5 111 49.5
SEGI_23181 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 1.8e-23 114.4 147 46.3
MBI05_g31848_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 6.5e-21 105.9 95 51.6
Pp3c1_27500 Physcomitrium patens HOM05D006293 ORTHO05D007971 3.7e-16 90.1 150 35.3
Actinidia00600 Actinidia chinensis HOM05D006293 ORTHO05D007971 6.5e-13 79.3 161 37.3
SMO223G0025 Selaginella moellendorffii HOM05D006293 ORTHO05D007971 6.1e-11 72.8 153 32.0
SGA_v2.0_scaffold9G04828 Striga asiatica HOM05D006293 ORTHO05D007971 9.7e-09 65.5 64 50.0
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 4.1e-07 60.1 134 29.1
AagrBONN_evm.TU.Sc2ySwM_368.1639 Anthoceros agrestis HOM05D006293 ORTHO05D009176 7.0e-07 59.3 145 34.5
Mapoly0022s0141 Marchantia polymorpha HOM05D021038 ORTHO05D009018 4.5e-06 56.6 94 35.1
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 7.7e-06 55.8 88 36.4


User provided reference genes

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