Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.4e-209 732.6 364 100.0
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 2.1e-205 718.8 362 98.3
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 3.7e-205 718.0 364 97.3
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 1.9e-201 705.7 364 95.9
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 4.1e-188 661.4 364 91.5
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 1.4e-167 593.2 364 79.7
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 1.3e-162 576.6 364 75.5
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 2.6e-158 562.4 362 74.0
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 7.5e-158 560.8 360 74.4
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 7.5e-158 560.8 364 74.2
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 7.0e-156 554.3 364 73.1
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 9.1e-156 553.9 363 73.8
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 2.0e-155 552.7 364 72.8
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 4.5e-155 551.6 361 72.6
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 5.9e-155 551.2 364 72.8
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 7.7e-155 550.8 364 74.7
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 5.5e-153 544.7 358 73.2
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 5.5e-153 544.7 361 71.7
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 5.5e-153 544.7 361 72.6
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.2e-153 544.3 362 71.5
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.5e-153 543.9 362 71.5
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 9.5e-153 543.9 363 72.5
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 1.6e-152 543.1 363 72.5
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 2.8e-152 542.3 363 72.2
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.6e-152 542.0 362 71.3
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 1.5e-150 536.6 362 71.3
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 2.0e-150 536.2 413 65.4
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 4.4e-150 535.0 362 71.0
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 6.3e-149 531.2 364 69.0
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 8.3e-149 530.8 372 68.8
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 9.2e-148 527.3 364 70.9
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 1.2e-147 526.9 364 68.7
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 2.7e-147 525.8 364 69.0
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 1.0e-146 523.9 362 71.0
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.3e-146 523.5 364 67.9
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 1.3e-146 523.5 369 70.7
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 2.9e-146 522.3 372 65.9
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 8.6e-146 520.8 361 69.5
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 1.9e-145 519.6 393 65.1
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 4.3e-145 518.5 376 66.5
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 5.6e-145 518.1 372 66.1
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 7.3e-145 517.7 364 67.0
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 1.2e-144 516.9 364 67.9
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.2e-144 516.9 361 68.4
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 1.6e-144 516.5 366 68.9
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 4.7e-144 515.0 364 66.5
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 1.8e-143 513.1 363 67.2
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 8.9e-143 510.8 365 67.9
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 1.2e-142 510.4 369 65.9
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 1.2e-142 510.4 357 69.5
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 1.5e-142 510.0 363 66.9
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 1.5e-142 510.0 362 66.3
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 2.6e-142 509.2 362 66.3
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 4.4e-142 508.4 362 66.0
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 5.8e-142 508.1 357 67.2
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 5.8e-142 508.1 359 68.8
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.7e-141 506.5 365 66.8
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 2.2e-141 506.1 363 66.4
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 3.7e-141 505.4 363 66.4
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 6.4e-141 504.6 358 68.4
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 8.3e-141 504.2 363 66.7
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 1.1e-140 503.8 363 66.1
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.1e-140 503.8 353 69.1
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.1e-140 503.8 353 69.1
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 2.4e-140 502.7 364 69.2
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 3.2e-140 502.3 362 66.9
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 4.1e-140 501.9 363 66.4
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 7.0e-140 501.1 364 66.8
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 1.6e-139 500.0 377 68.2
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 2.0e-139 499.6 363 65.8
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 2.0e-139 499.6 363 65.6
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 1.0e-138 497.3 363 65.8
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 1.3e-138 496.9 359 65.5
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 3.0e-138 495.7 362 65.5
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 5.0e-138 495.0 396 61.6
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.1e-137 493.8 381 62.7
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 1.5e-137 493.4 322 73.3
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 1.9e-137 493.0 350 68.3
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 3.3e-137 492.3 355 66.5
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 3.3e-137 492.3 350 67.4
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 3.3e-137 492.3 362 65.7
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 4.3e-137 491.9 363 65.6
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 4.3e-137 491.9 350 67.7
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 7.3e-137 491.1 363 65.0
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 2.8e-136 489.2 363 66.4
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.4e-134 481.9 389 60.7
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 1.3e-133 480.3 397 60.5
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.2e-133 479.6 389 60.4
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.9e-133 478.4 389 60.2
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 3.2e-132 475.7 298 78.5
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 4.1e-132 475.3 363 62.8
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 2.7e-131 472.6 362 65.2
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 2.7e-131 472.6 362 65.2
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 2.7e-131 472.6 317 70.0
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 6.6e-130 468.0 355 61.1
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 1.1e-129 467.2 316 71.2
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 2.1e-128 463.0 329 67.5
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 2.8e-128 462.6 358 70.1
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 3.6e-128 462.2 357 61.6
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 4.7e-128 461.8 364 61.8
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 4.4e-126 455.3 364 62.6
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 5.4e-124 448.4 315 69.5
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.5e-123 445.7 364 60.2
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 2.3e-122 443.0 366 60.4
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.1e-119 432.6 354 60.5
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 4.0e-119 432.2 292 68.8
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 2.9e-117 426.0 332 63.9
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 5.4e-116 421.8 301 69.8
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 1.9e-113 413.3 298 66.1
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.7e-107 392.9 389 53.2
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 6.6e-106 388.3 364 56.9
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.0e-102 376.7 287 63.4
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 4.9e-101 372.1 287 59.2
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 6.4e-101 371.7 361 51.0
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 7.1e-100 368.2 364 53.0
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 1.8e-98 363.6 352 51.1
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 6.2e-96 355.1 361 51.8
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 5.8e-94 348.6 367 50.4
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 1.9e-92 343.6 339 49.9
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 2.5e-92 343.2 336 49.1
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 1.2e-91 340.9 319 50.8
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.2e-91 340.9 268 63.8
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.1e-81 307.8 221 70.1
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 2.0e-62 243.8 152 71.7
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 1.7e-56 224.2 328 36.9
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 1.2e-51 208.0 135 70.4
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 2.1e-43 180.6 369 31.4
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 2.9e-37 160.2 162 54.3
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.5e-36 155.2 137 55.5
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 1.6e-35 154.5 337 32.3
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.7e-32 144.4 199 41.7
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 6.3e-32 142.5 138 53.6
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 7.0e-31 139.0 103 66.0
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 4.6e-30 136.3 116 61.2
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.3e-29 134.0 87 72.4
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.9e-28 131.0 85 71.8
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.3e-28 129.8 85 70.6
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 5.6e-28 129.4 87 69.0
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.4e-25 120.2 79 72.2
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 5.8e-25 119.4 351 25.9
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.7e-24 117.9 78 71.8
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.7e-24 116.7 78 70.5
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.4e-24 115.9 78 70.5
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 8.3e-24 115.5 82 69.5
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.3e-24 115.5 78 70.5
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.1e-23 115.2 79 69.6
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.2e-23 112.1 78 67.9
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.8e-22 109.0 79 65.8
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 1.0e-21 108.6 110 51.8
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.0e-21 107.1 70 70.0
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 3.0e-21 107.1 110 51.8
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 3.9e-21 106.7 104 58.7
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.1e-20 105.1 79 62.0
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 5.6e-20 102.8 78 64.1
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.8e-18 97.8 101 53.5
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.7e-16 91.3 76 59.2
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 5.4e-15 86.3 62 67.7
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.8e-14 82.4 56 71.4
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 3.0e-13 80.5 67 64.2
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 8.6e-13 79.0 45 77.8
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.0e-10 70.1 90 44.4
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 2.6e-09 67.4 52 59.6
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.9e-09 65.5 43 72.1
Gohir.D01G066700 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.9e-07 61.2 49 55.1
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 3.2e-07 60.5 43 65.1
Gohir.D01G081300 Gossypium hirsutum HOM05D000706 ORTHO05D013538 4.1e-07 60.1 37 67.6
Gorai.007G356500 Gossypium raimondii HOM05D000706 ORTHO05D013538 5.4e-07 59.7 49 55.1
Gohir.D06G127100 Gossypium hirsutum HOM05D000706 ORTHO05D013538 7.1e-07 59.3 79 43.0
Gohir.D13G142000 Gossypium hirsutum HOM05D000706 ORTHO05D013538 7.1e-07 59.3 49 55.1
Gorai.010G148400 Gossypium raimondii HOM05D000706 ORTHO05D013538 7.1e-07 59.3 79 43.0
Gohir.D03G122500 Gossypium hirsutum HOM05D000706 ORTHO05D013538 9.2e-07 58.9 43 62.8
Gohir.D09G143401 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.6e-06 58.2 49 55.1
Gohir.D09G037400 Gossypium hirsutum HOM05D000706 ORTHO05D013538 2.7e-06 57.4 79 39.2
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 3.5e-06 57.0 46 65.2
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 3.5e-06 57.0 42 61.9
Gohir.D06G138051 Gossypium hirsutum HOM05D000706 ORTHO05D013538 3.5e-06 57.0 37 64.9
Sabra07G0018600 Salix brachista HOM05D004259 ORTHO05D003320 7.8e-06 55.8 60 51.7
Sabra18G0120100 Salix brachista HOM05D001081 ORTHO05D003320 7.8e-06 55.8 60 51.7


User provided reference genes

Program Settings