Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.4e-37 159.1 78 100.0
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.0e-27 126.3 59 100.0
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 5.0e-27 124.0 59 98.3
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.1e-26 122.9 59 96.6
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 1.5e-26 122.5 59 96.6
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 4.2e-26 120.9 59 94.9
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 7.2e-26 120.2 59 94.9
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 1.2e-25 119.4 59 91.5
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 1.0e-24 116.3 59 89.8
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 3.0e-24 114.8 59 88.1
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 4.0e-24 114.4 59 84.7
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 1.2e-23 112.8 58 84.5
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 2.0e-23 112.1 59 83.1
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 3.4e-23 111.3 59 83.1
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 1.7e-22 109.0 56 83.9
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 2.8e-22 108.2 59 79.7
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 2.8e-22 108.2 59 83.1
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 4.9e-22 107.5 59 81.4
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 4.9e-22 107.5 59 81.4
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 6.3e-22 107.1 59 83.1
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 8.3e-22 106.7 58 81.0
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 1.1e-21 106.3 59 83.1
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 1.1e-21 106.3 55 81.8
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 1.1e-21 106.3 59 79.7
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 1.1e-21 106.3 59 79.7
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 1.1e-21 106.3 59 83.1
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 1.4e-21 105.9 57 82.5
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 1.4e-21 105.9 59 81.4
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 2.4e-21 105.1 59 81.4
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 2.4e-21 105.1 59 81.4
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 2.4e-21 105.1 54 85.2
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 3.1e-21 104.8 54 83.3
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 3.1e-21 104.8 54 83.3
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 3.1e-21 104.8 60 80.0
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 4.1e-21 104.4 59 79.7
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 4.1e-21 104.4 59 79.7
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 4.1e-21 104.4 60 76.7
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 4.1e-21 104.4 55 81.8
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 5.4e-21 104.0 59 78.0
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 7.0e-21 103.6 57 80.7
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 7.0e-21 103.6 59 78.0
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 7.0e-21 103.6 54 81.5
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 1.2e-20 102.8 54 81.5
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 1.2e-20 102.8 55 81.8
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 2.0e-20 102.1 55 78.2
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 2.0e-20 102.1 54 79.6
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 4.5e-20 100.9 59 72.9
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 4.5e-20 100.9 59 76.3
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 4.5e-20 100.9 59 76.3
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 5.9e-20 100.5 59 72.9
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 5.9e-20 100.5 59 74.6
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 5.9e-20 100.5 59 78.0
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 7.7e-20 100.1 56 75.0
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 7.7e-20 100.1 53 83.0
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 7.7e-20 100.1 55 76.4
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 7.7e-20 100.1 54 81.5
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 1.0e-19 99.8 59 69.5
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 1.3e-19 99.4 57 77.2
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.3e-19 99.4 57 77.2
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 1.3e-19 99.4 59 76.3
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 1.7e-19 99.0 59 71.2
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 1.7e-19 99.0 57 75.4
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 1.7e-19 99.0 57 75.4
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 1.7e-19 99.0 55 80.0
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 2.3e-19 98.6 57 80.7
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 2.3e-19 98.6 57 77.2
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 3.8e-19 97.8 59 74.6
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 3.8e-19 97.8 58 74.1
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 3.8e-19 97.8 57 75.4
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 3.8e-19 97.8 57 73.7
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 3.8e-19 97.8 56 73.2
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 8.6e-19 96.7 60 71.7
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 1.1e-18 96.3 59 72.9
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 1.5e-18 95.9 57 70.2
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.5e-18 95.9 57 73.7
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 1.5e-18 95.9 59 74.6
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 1.5e-18 95.9 54 77.8
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 1.9e-18 95.5 55 76.4
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 1.9e-18 95.5 57 71.9
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 3.3e-18 94.7 54 77.8
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 4.2e-18 94.4 59 69.5
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 7.2e-18 93.6 57 73.7
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 1.2e-17 92.8 59 67.8
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 1.6e-17 92.4 59 64.4
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 1.6e-17 92.4 56 73.2
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 1.6e-17 92.4 59 72.9
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 2.1e-17 92.0 57 68.4
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 2.1e-17 92.0 56 69.6
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 2.8e-17 91.7 54 74.1
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 3.6e-17 91.3 57 71.9
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 3.6e-17 91.3 54 74.1
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 3.6e-17 91.3 54 74.1
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 4.7e-17 90.9 54 74.1
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 4.7e-17 90.9 54 74.1
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 4.7e-17 90.9 54 72.2
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 4.7e-17 90.9 52 84.6
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 6.1e-17 90.5 54 72.2
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 6.1e-17 90.5 54 72.2
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 8.0e-17 90.1 54 72.2
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 1.0e-16 89.7 54 72.2
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 1.0e-16 89.7 54 72.2
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 1.0e-16 89.7 54 72.2
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 1.8e-16 89.0 54 70.4
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 1.8e-16 89.0 55 69.1
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 2.3e-16 88.6 59 67.8
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 2.3e-16 88.6 54 70.4
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 2.3e-16 88.6 53 69.8
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 2.3e-16 88.6 54 70.4
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 4.0e-16 87.8 52 71.2
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 1.5e-15 85.9 54 70.4
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 7.5e-15 83.6 45 80.0
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 1.3e-14 82.8 58 60.3
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 1.7e-14 82.4 54 68.5
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 2.2e-14 82.0 48 72.9
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 4.9e-14 80.9 58 65.5
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 1.1e-13 79.7 58 63.8
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 1.6e-12 75.9 44 75.0
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 2.9e-11 71.6 55 60.0
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 5.0e-11 70.9 55 56.4
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 5.6e-10 67.4 56 51.8
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 2.1e-09 65.5 56 46.4
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 2.1e-09 65.5 73 46.6
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 2.8e-09 65.1 57 45.6
CiPaw.09G101200 Carya illinoinensis HOM05D005610 ORTHO05D006181 7.5e-07 57.0 39 66.7


User provided reference genes

Program Settings