Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 2.4e-102 375.6 192 100.0
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.5e-88 329.7 177 94.9
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 4.2e-83 311.6 164 97.0
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 3.7e-71 271.9 143 95.1
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 2.4e-62 242.7 176 77.3
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 1.9e-19 100.1 196 43.9
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 7.2e-19 98.2 195 41.5
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 4.0e-17 92.4 200 41.5
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 8.9e-17 91.3 140 44.3
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 1.5e-16 90.5 149 44.3
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 3.4e-16 89.4 172 41.3
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 4.4e-16 89.0 183 44.8
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 4.4e-16 89.0 169 43.8
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 5.7e-16 88.6 171 45.6
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 5.7e-16 88.6 198 41.4
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 7.5e-16 88.2 177 39.0
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 9.8e-16 87.8 178 40.4
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 1.3e-15 87.4 190 42.6
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 1.7e-15 87.0 184 42.9
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.7e-15 87.0 176 43.2
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.2e-15 86.7 152 44.1
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 2.2e-15 86.7 114 51.8
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 2.2e-15 86.7 172 42.4
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 2.2e-15 86.7 174 40.2
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 2.8e-15 86.3 171 41.5
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 4.9e-15 85.5 194 43.3
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 4.9e-15 85.5 114 50.0
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 4.9e-15 85.5 170 42.4
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 4.9e-15 85.5 131 45.8
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 6.3e-15 85.1 197 36.5
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 8.3e-15 84.7 175 39.4
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 1.1e-14 84.3 195 39.0
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 1.4e-14 84.0 184 37.0
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 1.4e-14 84.0 168 39.9
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.4e-14 83.2 149 40.9
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 2.4e-14 83.2 149 40.9
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 4.1e-14 82.4 175 38.9
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 5.4e-14 82.0 118 43.2
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 5.4e-14 82.0 168 42.9
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 5.4e-14 82.0 180 38.9
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 7.0e-14 81.6 171 40.9
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 1.2e-13 80.9 178 41.0
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 2.7e-13 79.7 140 43.6
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 4.5e-13 79.0 142 43.0
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 4.5e-13 79.0 174 38.5
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 1.0e-12 77.8 184 39.7
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 1.0e-12 77.8 176 40.3
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 1.3e-12 77.4 133 41.4
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 2.3e-12 76.6 181 38.1
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 3.8e-12 75.9 170 41.2
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 6.6e-12 75.1 196 39.3
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 1.1e-11 74.3 142 40.8
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 1.9e-11 73.6 176 37.5
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 2.5e-11 73.2 153 39.9
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 3.3e-11 72.8 173 38.2
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 3.3e-11 72.8 165 38.2
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 5.6e-11 72.0 165 39.4
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 7.3e-11 71.6 184 32.6
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 9.5e-11 71.2 134 40.3
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 9.5e-11 71.2 157 38.9
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 1.2e-10 70.9 168 36.3
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 1.6e-10 70.5 168 36.3
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 1.6e-10 70.5 146 41.8
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 2.1e-10 70.1 131 42.7
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 2.1e-10 70.1 131 42.7
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 2.8e-10 69.7 122 45.1
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 2.8e-10 69.7 167 41.9
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 3.6e-10 69.3 150 40.7
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 4.7e-10 68.9 166 39.2
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 4.7e-10 68.9 131 42.7
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 6.1e-10 68.6 168 32.1
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 8.0e-10 68.2 133 40.6
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 8.0e-10 68.2 137 40.9
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 8.0e-10 68.2 184 36.4
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 8.0e-10 68.2 86 45.3
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 8.0e-10 68.2 177 39.0
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 8.0e-10 68.2 160 32.5
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 1.0e-09 67.8 171 38.0
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.4e-09 67.4 108 42.6
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 1.4e-09 67.4 173 37.0
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 1.4e-09 67.4 119 41.2
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 1.4e-09 67.4 201 32.8
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 1.8e-09 67.0 192 38.5
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 1.8e-09 67.0 93 47.3
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 2.3e-09 66.6 153 37.3
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 3.1e-09 66.2 163 38.7
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 4.0e-09 65.9 177 37.9
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 4.0e-09 65.9 132 40.9
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 4.0e-09 65.9 160 36.9
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 5.2e-09 65.5 163 38.0
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 6.8e-09 65.1 86 46.5
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 6.8e-09 65.1 86 46.5
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 6.8e-09 65.1 167 34.1
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 8.9e-09 64.7 154 41.6
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 8.9e-09 64.7 166 38.0
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 8.9e-09 64.7 166 38.0
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 8.9e-09 64.7 166 38.0
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 8.9e-09 64.7 176 36.4
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 1.5e-08 63.9 138 39.9
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 1.5e-08 63.9 165 37.0
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 1.5e-08 63.9 132 39.4
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 1.5e-08 63.9 147 35.4
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 2.0e-08 63.5 129 43.4
CDE06G2798 Ceratophyllum demersum HOM05D005065 ORTHO05D005944 2.6e-08 63.2 121 39.7
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 2.6e-08 63.2 90 46.7
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 2.6e-08 63.2 153 36.6
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 3.4e-08 62.8 144 41.7
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 4.4e-08 62.4 164 36.0
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 4.4e-08 62.4 164 36.0
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 4.4e-08 62.4 153 38.6
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 5.8e-08 62.0 152 37.5
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 5.8e-08 62.0 153 37.3
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 7.5e-08 61.6 144 39.6
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 7.5e-08 61.6 201 35.8
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 9.8e-08 61.2 138 37.0
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 9.8e-08 61.2 137 33.6
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 1.3e-07 60.8 145 36.6
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 1.3e-07 60.8 102 37.3
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 1.3e-07 60.8 114 42.1
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 1.7e-07 60.5 110 42.7
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 1.7e-07 60.5 142 38.0
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 2.2e-07 60.1 147 36.1
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 4.9e-07 58.9 112 40.2
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 8.3e-07 58.2 177 35.0
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 1.9e-06 57.0 143 37.8
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 3.2e-06 56.2 135 37.8
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 5.4e-06 55.5 108 40.7
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 7.0e-06 55.1 163 33.7


User provided reference genes

Program Settings