Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G1788 Fragaria x ananassa HOM05D000371 ORTHO05D004413 8.0e-70 266.9 131 100.0
FAN15G3172 Fragaria x ananassa HOM05D008633 ORTHO05D011158 1.3e-22 110.2 59 84.7
FAN15G3112 Fragaria x ananassa HOM05D007387 ORTHO05D009321 3.1e-21 105.5 53 98.1
FAN27G1365 Fragaria x ananassa HOM05D007387 ORTHO05D009321 1.7e-19 99.8 57 91.2
FvH4_2g18170 Fragaria vesca HOM05D000371 ORTHO05D004413 2.9e-19 99.0 52 88.5
FAN15G3168 Fragaria x ananassa HOM05D000371 ORTHO05D004413 2.9e-19 99.0 52 88.5
FAN24G2904 Fragaria x ananassa HOM05D000371 ORTHO05D004413 2.9e-19 99.0 52 88.5
FAN27G2062 Fragaria x ananassa HOM05D000371 ORTHO05D004413 2.9e-19 99.0 52 88.5
FvH4_2g10040 Fragaria vesca HOM05D007387 ORTHO05D009321 3.8e-19 98.6 57 89.5
FAN24G0663 Fragaria x ananassa HOM05D007387 ORTHO05D009321 3.8e-19 98.6 57 89.5
RcHm_v2.0_Chr6g0283551 Rosa chinensis HOM05D000371 ORTHO05D004413 4.2e-18 95.1 52 82.7
Prupe.8G194200 Prunus persica HOM05D000371 ORTHO05D004413 4.6e-17 91.7 52 80.8
MD10G1156400 Malus domestica HOM05D000371 ORTHO05D004413 1.3e-16 90.1 52 76.9
MD05G1166400 Malus domestica HOM05D000371 ORTHO05D004413 1.8e-16 89.7 69 66.7
Atru.chr6.1454 Acer truncatum HOM05D000371 ORTHO05D004413 3.0e-16 89.0 52 75.0
Cc01_g16420 Coffea canephora HOM05D000371 ORTHO05D004413 3.9e-16 88.6 52 76.9
SalBow6G7064 Salvia bowleyana HOM05D000371 ORTHO05D004413 5.1e-16 88.2 52 76.9
Thhalv10005016m.g Eutrema salsugineum HOM05D000371 ORTHO05D004413 6.7e-16 87.8 52 73.1
CARHR183430 Cardamine hirsuta HOM05D000371 ORTHO05D004413 8.7e-16 87.4 52 73.1
Manes.12G050600 Manihot esculenta HOM05D000371 ORTHO05D004413 8.7e-16 87.4 52 73.1
Sp2g18940 Schrenkiella parvula HOM05D000371 ORTHO05D004413 8.7e-16 87.4 52 75.0
A03p44130 Brassica napus HOM05D000371 ORTHO05D004413 1.1e-15 87.0 52 73.1
BraA03t13542Z Brassica rapa HOM05D000371 ORTHO05D004413 1.1e-15 87.0 52 73.1
Ciclev10032978m.g Citrus clementina HOM05D000371 ORTHO05D004413 1.1e-15 87.0 52 73.1
Dinv30669 Davidia involucrata HOM05D000371 ORTHO05D004413 1.1e-15 87.0 52 73.1
Dinv34329 Davidia involucrata HOM05D000371 ORTHO05D004413 1.1e-15 87.0 52 73.1
THA.LOC104804637 Tarenaya hassleriana HOM05D000371 ORTHO05D004413 1.1e-15 87.0 52 75.0
AL3G41120 Arabidopsis lyrata HOM05D000371 ORTHO05D004413 1.5e-15 86.7 52 73.1
AT3G25220 Arabidopsis thaliana HOM05D000371 ORTHO05D004413 1.5e-15 86.7 52 73.1
CSS0014653 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D004413 1.5e-15 86.7 52 73.1
Carub.0003s2559 Capsella rubella HOM05D000371 ORTHO05D004413 1.5e-15 86.7 52 73.1
CARHR101570 Cardamine hirsuta HOM05D000371 ORTHO05D004413 1.5e-15 86.7 52 73.1
COL.COLO4_16001 Corchorus olitorius HOM05D000371 ORTHO05D004413 1.5e-15 86.7 52 73.1
Thhalv10002679m.g Eutrema salsugineum HOM05D000371 ORTHO05D004413 1.5e-15 86.7 52 73.1
Potri.002G248200 Populus trichocarpa HOM05D000371 ORTHO05D004413 1.5e-15 86.7 52 73.1
SGA_v2.0_scaffold18G08341 Striga asiatica HOM05D000371 ORTHO05D004413 1.5e-15 86.7 52 75.0
TAR636G0461 Trochodendron aralioides HOM05D000371 ORTHO05D004413 1.5e-15 86.7 52 73.1
TAR636G1333 Trochodendron aralioides HOM05D000371 ORTHO05D004413 1.5e-15 86.7 52 73.1
MSTRG.20983 Avicennia marina HOM05D000371 ORTHO05D004413 1.9e-15 86.3 52 75.0
BcaC01g03235 Brassica carinata HOM05D000371 ORTHO05D004413 1.9e-15 86.3 52 73.1
A02p37570 Brassica napus HOM05D000371 ORTHO05D004413 1.9e-15 86.3 52 71.2
C03p54500 Brassica napus HOM05D000371 ORTHO05D004413 1.9e-15 86.3 52 73.1
BolC3t17737H Brassica oleracea HOM05D000371 ORTHO05D004413 1.9e-15 86.3 52 73.1
BraA02t08742Z Brassica rapa HOM05D000371 ORTHO05D004413 1.9e-15 86.3 52 71.2
PSO675G2000 Papaver somniferum HOM05D000371 ORTHO05D004413 1.9e-15 86.3 52 71.2
GSVIVG01005148001 Vitis vinifera HOM05D000371 ORTHO05D004413 1.9e-15 86.3 52 73.1
Carub.0008s0821 Capsella rubella HOM05D000371 ORTHO05D004413 2.5e-15 85.9 52 71.2
MBI07_g06199_MAGBIO Magnolia biondii HOM05D000371 ORTHO05D004413 2.5e-15 85.9 52 71.2
BcaB08g34445 Brassica carinata HOM05D000371 ORTHO05D004413 3.3e-15 85.5 52 71.2
BcaC03g17661 Brassica carinata HOM05D000371 ORTHO05D004413 3.3e-15 85.5 52 71.2
C02p56670 Brassica napus HOM05D000371 ORTHO05D004413 3.3e-15 85.5 52 71.2
BolC2t11728H Brassica oleracea HOM05D000371 ORTHO05D004413 3.3e-15 85.5 52 71.2
Eucgr.H00751 Eucalyptus grandis HOM05D000371 ORTHO05D004413 3.3e-15 85.5 52 73.1
THA.LOC104822480 Tarenaya hassleriana HOM05D000371 ORTHO05D004413 3.3e-15 85.5 52 73.1
Actinidia09455 Actinidia chinensis HOM05D000371 ORTHO05D004413 4.3e-15 85.1 52 71.2
Actinidia23775 Actinidia chinensis HOM05D000371 ORTHO05D004413 4.3e-15 85.1 52 71.2
Migut.D02483 Erythranthe guttata HOM05D000371 ORTHO05D004413 4.3e-15 85.1 52 73.1
Thecc.01G215300 Theobroma cacao HOM05D000371 ORTHO05D004413 4.3e-15 85.1 69 59.4
FAN15G2274 Fragaria x ananassa HOM05D007387 ORTHO05D009321 5.7e-15 84.7 53 84.9
Gohir.A07G197900 Gossypium hirsutum HOM05D000371 ORTHO05D004413 5.7e-15 84.7 52 71.2
Gohir.D07G204300 Gossypium hirsutum HOM05D000371 ORTHO05D004413 5.7e-15 84.7 52 71.2
Gorai.001G230100 Gossypium raimondii HOM05D000371 ORTHO05D004413 5.7e-15 84.7 52 71.2
Lsat_1_v5_gn_9_17380 Lactuca sativa HOM05D000371 ORTHO05D004413 5.7e-15 84.7 52 71.2
Nn1g08129 Nelumbo nucifera HOM05D000371 ORTHO05D004413 5.7e-15 84.7 52 69.2
PSO017G5395 Papaver somniferum HOM05D000371 ORTHO05D004413 5.7e-15 84.7 52 69.2
Rhsim01G0250200 Rhododendron simsii HOM05D000371 ORTHO05D004413 5.7e-15 84.7 52 69.2
Rhsim13G0050600 Rhododendron simsii HOM05D000371 ORTHO05D004413 5.7e-15 84.7 52 71.2
TWI36G1727 Tripterygium wilfordii HOM05D000371 ORTHO05D004413 5.7e-15 84.7 52 71.2
Aa31sc18G130 Aethionema arabicum HOM05D000371 ORTHO05D004413 7.4e-15 84.3 52 71.2
CSS0011995 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D004413 7.4e-15 84.3 52 71.2
Duzib211G0112 Durio zibethinus HOM05D000371 ORTHO05D004413 7.4e-15 84.3 52 69.2
Oeu057855.1 Olea europaea HOM05D000371 ORTHO05D004413 7.4e-15 84.3 49 77.6
Sabra02G0188900 Salix brachista HOM05D000371 ORTHO05D004413 9.6e-15 84.0 52 71.2
Medtr8g012380 Medicago truncatula HOM05D000371 ORTHO05D004413 1.3e-14 83.6 52 73.1
ECA247G0312 Erigeron canadensis HOM05D000371 ORTHO05D004413 1.6e-14 83.2 52 69.2
HanXRQChr08g0232321 Helianthus annuus HOM05D000371 ORTHO05D004413 1.6e-14 83.2 52 69.2
Hund05591 Selenicereus undatus HOM05D000371 ORTHO05D004413 1.6e-14 83.2 52 69.2
AL43U10060 Arabidopsis lyrata HOM05D000371 ORTHO05D004413 2.1e-14 82.8 52 69.2
AL8G21570 Arabidopsis lyrata HOM05D000371 ORTHO05D004413 2.1e-14 82.8 52 69.2
AT5G48580 Arabidopsis thaliana HOM05D000371 ORTHO05D004413 2.1e-14 82.8 52 69.2
MSTRG.18825 Avicennia marina HOM05D000371 ORTHO05D004413 2.1e-14 82.8 52 71.2
AUR62001163 Chenopodium quinoa HOM05D000371 ORTHO05D004413 2.1e-14 82.8 62 62.9
AUR62022159 Chenopodium quinoa HOM05D000371 ORTHO05D004413 2.1e-14 82.8 62 62.9
Lj2A1121G85 Lonicera japonica HOM05D000371 ORTHO05D004413 2.1e-14 82.8 52 71.2
BcaB07g30033 Brassica carinata HOM05D000371 ORTHO05D004413 2.8e-14 82.4 52 67.3
Gohir.A11G140600 Gossypium hirsutum HOM05D000371 ORTHO05D004413 2.8e-14 82.4 52 71.2
Gohir.D11G147100 Gossypium hirsutum HOM05D000371 ORTHO05D004413 2.8e-14 82.4 52 71.2
Gorai.007G157500 Gossypium raimondii HOM05D000371 ORTHO05D004413 2.8e-14 82.4 52 71.2
Hma1.2p1_1234F.1_g269040 Hydrangea macrophylla HOM05D000371 ORTHO05D004413 2.8e-14 82.4 52 67.3
PGR083G1508 Punica granatum HOM05D000371 ORTHO05D004413 2.8e-14 82.4 52 71.2
SEGI_02686 Sequoiadendron giganteum HOM05D000371 ORTHO05D004413 2.8e-14 82.4 52 67.3
TWI75G1821 Tripterygium wilfordii HOM05D000371 ORTHO05D004413 2.8e-14 82.4 52 69.2
ATR1147G058 Amborella trichopoda HOM05D000371 ORTHO05D004413 3.7e-14 82.0 52 69.2
Aqoxy2G03942 Aquilegia oxysepala HOM05D000371 ORTHO05D004413 3.7e-14 82.0 52 67.3
EL10Ac7g17955 Beta vulgaris HOM05D000371 ORTHO05D004413 3.7e-14 82.0 62 59.7
ClCG09G008480 Citrullus lanatus HOM05D000371 ORTHO05D004413 3.7e-14 82.0 52 67.3
MELO3C021108.2 Cucumis melo HOM05D000371 ORTHO05D004413 3.7e-14 82.0 52 67.3
Sed0001743 Sechium edule HOM05D000371 ORTHO05D004413 3.7e-14 82.0 52 69.2
vmacro14713 Vaccinium macrocarpon HOM05D000371 ORTHO05D004413 3.7e-14 82.0 49 69.4
Ca_23207_v3 Cicer arietinum L. HOM05D000371 ORTHO05D004413 4.8e-14 81.6 52 71.2
Lalb_Chr07g0194391 Lupinus albus HOM05D000371 ORTHO05D004413 4.8e-14 81.6 52 71.2
unitig_899.g15401 Utricularia gibba HOM05D000371 ORTHO05D004413 4.8e-14 81.6 52 67.3
CsaV3_7G026580 Cucumis sativus L. HOM05D000371 ORTHO05D004413 6.3e-14 81.3 52 67.3
Lj3g0015986 Lotus japonicus HOM05D000371 ORTHO05D004413 6.3e-14 81.3 52 71.2
Psat4g204760 Pisum sativum HOM05D000371 ORTHO05D004413 6.3e-14 81.3 52 71.2
TPR.G16436 Trifolium pratense HOM05D000371 ORTHO05D004413 6.3e-14 81.3 52 71.2
Sed0025464 Sechium edule HOM05D000371 ORTHO05D004413 8.2e-14 80.9 52 65.4
Sc24g0003430 Simmondsia chinensis HOM05D000599 ORTHO05D004413 8.2e-14 80.9 52 67.3
HPP92_025245 Vanilla planifolia HOM05D000371 ORTHO05D004413 8.2e-14 80.9 52 67.3
Nitab4.5_0000296g0010 Nicotiana tabacum HOM05D000371 ORTHO05D004413 1.1e-13 80.5 52 69.2
Nitab4.5_0011877g0010 Nicotiana tabacum HOM05D000371 ORTHO05D001484 1.1e-13 80.5 52 69.2
CANSAT01G0282 Cannabis sativa HOM05D000371 ORTHO05D004413 1.4e-13 80.1 52 65.4
Lsat_1_v5_gn_8_5000 Lactuca sativa HOM05D000371 ORTHO05D004413 1.4e-13 80.1 49 69.4
Sp3g22840 Schrenkiella parvula HOM05D000371 ORTHO05D004413 1.4e-13 80.1 52 67.3
CANSAT01G2478 Cannabis sativa HOM05D000371 ORTHO05D004413 1.8e-13 79.7 52 65.4
CiPaw.13G051600 Carya illinoinensis HOM05D000371 ORTHO05D004413 2.4e-13 79.3 52 65.4
Haze_03332 Corylus avellana HOM05D000371 ORTHO05D004413 2.4e-13 79.3 49 69.4
FAN20G0098 Fragaria x ananassa HOM05D007387 ORTHO05D009321 2.4e-13 79.3 55 78.2
Glyma.16G088200 Glycine max HOM05D000371 ORTHO05D004413 2.4e-13 79.3 52 67.3
Manes.13G052000 Manihot esculenta HOM05D000371 ORTHO05D004413 2.4e-13 79.3 52 63.5
Nn3g20117 Nelumbo nucifera HOM05D000371 ORTHO05D004413 2.4e-13 79.3 52 67.3
Os09g0501850 Oryza sativa ssp. japonica HOM05D000371 ORTHO05D004413 2.4e-13 79.3 52 65.4
Phvul.010G024400 Phaseolus vulgaris HOM05D000371 ORTHO05D004413 2.4e-13 79.3 52 67.3
VMungo0331G2032 Vigna mungo HOM05D000371 ORTHO05D004413 2.4e-13 79.3 52 69.2
CDE07G1844 Ceratophyllum demersum HOM05D000371 ORTHO05D004413 3.1e-13 79.0 52 63.5
DCAR_012683 Daucus carota HOM05D000371 ORTHO05D004413 3.1e-13 79.0 47 70.2
Peaxi162Scf00487g00217 Petunia axillaris HOM05D000371 ORTHO05D004413 3.1e-13 79.0 52 67.3
AagrBONN_evm.TU.Sc2ySwM_228.2678 Anthoceros agrestis HOM05D000371 ORTHO05D004413 4.1e-13 78.6 52 67.3
Glyma.03G086100 Glycine max HOM05D000371 ORTHO05D004413 4.1e-13 78.6 52 67.3
SMO351G0095 Selaginella moellendorffii HOM05D000371 ORTHO05D004413 4.1e-13 78.6 52 65.4
arahy.Tifrunner.gnm1.ann1.0JX5VM Arachis hypogaea HOM05D000371 ORTHO05D004413 5.3e-13 78.2 52 65.4
arahy.Tifrunner.gnm1.ann1.4803WV Arachis hypogaea HOM05D000371 ORTHO05D004413 5.3e-13 78.2 52 65.4
BcaB07g30031 Brassica carinata HOM05D000371 ORTHO05D004413 5.3e-13 78.2 52 61.5
BcaC06g30779 Brassica carinata HOM05D000371 ORTHO05D004413 5.3e-13 78.2 52 65.4
A06p39070 Brassica napus HOM05D000371 ORTHO05D004413 5.3e-13 78.2 52 65.4
C07p39270 Brassica napus HOM05D000371 ORTHO05D004413 5.3e-13 78.2 52 65.4
BolC7t44447H Brassica oleracea HOM05D000371 ORTHO05D004413 5.3e-13 78.2 52 65.4
BraA06t26820Z Brassica rapa HOM05D000371 ORTHO05D004413 5.3e-13 78.2 52 65.4
CDE04G0845 Ceratophyllum demersum HOM05D000371 ORTHO05D004413 5.3e-13 78.2 52 63.5
Solyc09g057670.3 Solanum lycopersicum HOM05D000371 ORTHO05D004413 5.3e-13 78.2 52 67.3
PGSC0003DMG400008723 Solanum tuberosum HOM05D000371 ORTHO05D004413 5.3e-13 78.2 52 67.3
CAN.G3.41 Capsicum annuum HOM05D000371 ORTHO05D004413 9.0e-13 77.4 52 67.3
ECA248G1163 Erigeron canadensis HOM05D000371 ORTHO05D004413 9.0e-13 77.4 52 65.4
FAN15G0178 Fragaria x ananassa HOM05D007387 ORTHO05D009321 9.0e-13 77.4 55 80.0
FAN21G3109 Fragaria x ananassa HOM05D007387 ORTHO05D001690 9.0e-13 77.4 47 87.2
FAN15G2118 Fragaria x ananassa HOM05D000276 ORTHO05D004413 1.2e-12 77.0 64 60.9
HanXRQChr01g0017181 Helianthus annuus HOM05D000371 ORTHO05D004413 1.2e-12 77.0 52 65.4
Lsat_1_v5_gn_5_178981 Lactuca sativa HOM05D000371 ORTHO05D004413 1.2e-12 77.0 52 63.5
Sc05g0001850 Simmondsia chinensis HOM05D000371 ORTHO05D004413 1.2e-12 77.0 49 65.3
Mapoly0007s0072 Marchantia polymorpha HOM05D000371 ORTHO05D004413 1.5e-12 76.6 63 57.1
CSS0014759 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D004413 3.4e-12 75.5 52 67.3
CSS0028690 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D004413 3.4e-12 75.5 52 67.3
CSS0040889 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D004413 3.4e-12 75.5 52 67.3
Hma1.2p1_0226F.1_g095170 Hydrangea macrophylla HOM05D000371 ORTHO05D004413 3.4e-12 75.5 66 56.1
Os01g0915800 Oryza sativa ssp. japonica HOM05D000371 ORTHO05D004413 3.4e-12 75.5 52 61.5
Zm00001eb143510 Zea mays HOM05D000371 ORTHO05D004413 4.5e-12 75.1 52 61.5
BcaB07g30030 Brassica carinata HOM05D000371 ORTHO05D004413 5.9e-12 74.7 49 61.2
QL09p049282 Quercus lobata HOM05D000371 ORTHO05D004413 5.9e-12 74.7 52 61.5
Sp3g22850 Schrenkiella parvula HOM05D000371 ORTHO05D004413 1.3e-11 73.6 49 59.2
Sopen09g021140 Solanum pennellii HOM05D000371 ORTHO05D004413 1.3e-11 73.6 52 65.4
Zm00001eb364840 Zea mays HOM05D000371 ORTHO05D004413 1.3e-11 73.6 52 59.6
BcaC06g33076 Brassica carinata HOM05D000371 ORTHO05D004413 1.1e-10 70.5 49 65.3
Nn7g38183 Nelumbo nucifera HOM05D000371 ORTHO05D004413 1.1e-10 70.5 62 53.2
Pp3c15_20490 Physcomitrium patens HOM05D000371 ORTHO05D004413 1.9e-10 69.7 52 57.7
Zm00001eb317480 Zea mays HOM05D000371 ORTHO05D004413 1.6e-09 66.6 52 61.5
Pp3c9_18040 Physcomitrium patens HOM05D000371 ORTHO05D004413 1.0e-08 63.9 52 51.9
Haze_26330 Corylus avellana HOM05D000371 ORTHO05D004413 3.9e-08 62.0 50 52.0
Pp3c21_11940 Physcomitrium patens HOM05D000371 ORTHO05D004413 5.1e-08 61.6 52 50.0
Cre11.g479050 Chlamydomonas reinhardtii HOM05D000371 ORTHO05D004413 2.5e-07 59.3 52 50.0
Cre11.g478700 Chlamydomonas reinhardtii HOM05D000371 ORTHO05D004413 3.3e-07 58.9 47 53.2
Cc00_g20380 Coffea canephora HOM05D000371 ORTHO05D003573 5.7e-07 58.2 41 56.1
Haze_27021 Corylus avellana HOM05D000371 ORTHO05D004413 5.7e-07 58.2 49 51.0
Nn1g05185 Nelumbo nucifera HOM05D000371 ORTHO05D004413 9.7e-07 57.4 32 75.0
Cre16.g675550 Chlamydomonas reinhardtii HOM05D000371 ORTHO05D003573 1.3e-06 57.0 38 60.5
Eucgr.E04322 Eucalyptus grandis HOM05D000371 ORTHO05D003573 2.8e-06 55.8 40 60.0
Mapoly0021s0084 Marchantia polymorpha HOM05D000371 ORTHO05D003573 2.8e-06 55.8 42 54.8
PRCOL_00002965 Prasinoderma coloniale HOM05D004900 ORTHO05D001484 3.7e-06 55.5 38 63.2
SMO203G0114 Selaginella moellendorffii HOM05D000371 ORTHO05D001484 3.7e-06 55.5 41 58.5
Cre11.g478750 Chlamydomonas reinhardtii HOM05D000371 ORTHO05D004413 6.3e-06 54.7 80 40.0
Cre16.g675500 Chlamydomonas reinhardtii HOM05D000371 ORTHO05D003573 6.3e-06 54.7 39 59.0
Mapoly0001s0304 Marchantia polymorpha HOM05D000371 ORTHO05D001484 6.3e-06 54.7 38 63.2
Cfa001152 Carpinus fangiana HOM05D000001 ORTHO05D010268 8.2e-06 54.3 40 57.5


User provided reference genes

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