Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G1711 Fragaria x ananassa HOM05D000358 ORTHO05D009346 3.3e-59 231.5 114 100.0
FvH4_2g23371 Fragaria vesca HOM05D000358 ORTHO05D009346 5.2e-49 197.6 169 65.1
RcHm_v2.0_Chr6g0290831 Rosa chinensis HOM05D000358 ORTHO05D009346 8.3e-47 190.3 170 62.9
Prupe.8G239600 Prunus persica HOM05D000358 ORTHO05D009346 2.3e-33 145.6 170 50.0
MD11G1284000 Malus domestica HOM05D000358 ORTHO05D009346 8.9e-33 143.7 172 48.8
CiPaw.07G090600 Carya illinoinensis HOM05D000358 ORTHO05D009346 1.7e-23 112.8 166 42.2
Dinv32921 Davidia involucrata HOM05D000358 ORTHO05D002525 1.1e-22 110.2 167 42.5
Potri.005G210700 Populus trichocarpa HOM05D000358 ORTHO05D009346 2.1e-21 105.9 175 41.7
Haze_04693 Corylus avellana HOM05D000358 ORTHO05D009346 7.3e-19 97.4 91 63.7
Manes.05G077400 Manihot esculenta HOM05D000358 ORTHO05D009346 7.3e-19 97.4 165 40.6
TAR375G0394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 3.6e-18 95.1 170 37.1
GSVIVG01001163001 Vitis vinifera HOM05D000358 ORTHO05D009346 3.6e-18 95.1 170 38.8
Sabra05G0160900 Salix brachista HOM05D000358 ORTHO05D009346 6.2e-18 94.4 170 38.8
TAR636G2394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 3.1e-17 92.0 170 37.1
Atru.chr5.1460 Acer truncatum HOM05D000358 ORTHO05D009346 6.9e-17 90.9 166 38.0
CANSAT25G1780 Cannabis sativa HOM05D000358 ORTHO05D009346 9.0e-17 90.5 177 40.1
QL12p021343 Quercus lobata HOM05D000358 ORTHO05D009346 1.5e-16 89.7 94 57.4
Ciclev10022514m.g Citrus clementina HOM05D000358 ORTHO05D009346 2.6e-16 89.0 178 36.5
CSS0040373 Camellia sinensis var. sinensis HOM05D000358 ORTHO05D009346 3.4e-16 88.6 169 37.3
TWI14G1410 Tripterygium wilfordii HOM05D000358 ORTHO05D009346 1.9e-14 82.8 148 37.2
Duzib133G0337 Durio zibethinus HOM05D000358 ORTHO05D009346 2.4e-14 82.4 174 36.8
vmacro02584 Vaccinium macrocarpon HOM05D000358 ORTHO05D009346 4.2e-14 81.6 67 62.7
MBI04_g20822_MAGBIO Magnolia biondii HOM05D000358 ORTHO05D009346 1.2e-13 80.1 170 36.5
Hund09500 Selenicereus undatus HOM05D000358 ORTHO05D009346 2.7e-13 79.0 150 35.3
Cpa.g.sc52.51 Carica papaya HOM05D000358 ORTHO05D009346 7.9e-13 77.4 169 33.7
COL.COLO4_09074 Corchorus olitorius HOM05D000358 ORTHO05D009346 1.0e-12 77.0 190 34.7
Sed0015724 Sechium edule HOM05D000358 ORTHO05D009346 1.0e-12 77.0 154 35.1
Ah.11g050550 Amaranthus hybridus HOM05D000358 ORTHO05D009346 1.3e-12 76.6 147 38.1
Thecc.01G276900 Theobroma cacao HOM05D000358 ORTHO05D009346 1.3e-12 76.6 175 36.0
PSO761G0166 Papaver somniferum HOM05D000358 ORTHO05D009346 1.8e-12 76.3 167 35.3
Cc01_g19380 Coffea canephora HOM05D000358 ORTHO05D009346 5.1e-12 74.7 150 34.0
Nn1g02275 Nelumbo nucifera HOM05D000358 ORTHO05D009346 6.7e-12 74.3 89 48.3
CsaV3_6G037210 Cucumis sativus L. HOM05D000358 ORTHO05D009346 1.1e-11 73.6 171 32.7
Aqoxy2G03373 Aquilegia oxysepala HOM05D000358 ORTHO05D009346 1.5e-11 73.2 167 35.9
ECA247G2961 Erigeron canadensis HOM05D000358 ORTHO05D009346 1.9e-11 72.8 147 32.7
PSO210G0760 Papaver somniferum HOM05D000358 ORTHO05D009346 5.6e-11 71.2 167 33.5
EL10Ac5g10557 Beta vulgaris HOM05D000358 ORTHO05D009346 9.6e-11 70.5 167 32.9
AUR62028609 Chenopodium quinoa HOM05D000358 ORTHO05D009346 9.6e-11 70.5 166 34.3
ClCG07G000330 Citrullus lanatus HOM05D000358 ORTHO05D009346 9.6e-11 70.5 138 34.1
Gohir.A11G123500 Gossypium hirsutum HOM05D000358 ORTHO05D009346 1.6e-10 69.7 174 33.9
Gorai.007G137700 Gossypium raimondii HOM05D000358 ORTHO05D009346 1.6e-10 69.7 174 33.9
Gohir.D11G128700 Gossypium hirsutum HOM05D000358 ORTHO05D009346 2.1e-10 69.3 174 32.8
Phvul.001G152500 Phaseolus vulgaris HOM05D000358 ORTHO05D009346 6.2e-10 67.8 160 31.9
Eucgr.K03368 Eucalyptus grandis HOM05D000358 ORTHO05D009346 8.1e-10 67.4 167 33.5
Sopen09g027050 Solanum pennellii HOM05D000358 ORTHO05D009346 8.1e-10 67.4 122 36.9
Nitab4.5_0004318g0030 Nicotiana tabacum HOM05D000358 ORTHO05D009346 1.1e-09 67.0 123 35.8
Lsat_1_v5_gn_9_3480 Lactuca sativa HOM05D000358 ORTHO05D009346 1.8e-09 66.2 173 32.9
Lj1A47T39 Lonicera japonica HOM05D000358 ORTHO05D009346 2.4e-09 65.9 179 33.0
Hma1.2p1_0822F.1_g224410 Hydrangea macrophylla HOM05D000358 ORTHO05D009346 4.0e-09 65.1 41 73.2
MELO3C014393.2 Cucumis melo HOM05D000358 ORTHO05D009346 6.9e-09 64.3 88 42.0
MSTRG.12558 Avicennia marina HOM05D000358 ORTHO05D009346 9.0e-09 63.9 149 30.9
Nitab4.5_0005971g0010 Nicotiana tabacum HOM05D000358 ORTHO05D009346 9.0e-09 63.9 123 35.0
Rhsim13G0026100 Rhododendron simsii HOM05D000358 ORTHO05D009346 1.2e-08 63.5 105 40.0
Atru.BG.13.p Acer truncatum HOM05D000358 ORTHO05D009346 1.5e-08 63.2 49 59.2
Glyma.03G155200 Glycine max HOM05D000358 ORTHO05D009346 2.0e-08 62.8 119 35.3
SGA_v2.0_scaffold81G26022 Striga asiatica HOM05D000358 ORTHO05D009346 2.6e-08 62.4 112 36.6
Peaxi162Scf00641g00315 Petunia axillaris HOM05D000358 ORTHO05D009346 4.5e-08 61.6 166 29.5
arahy.Tifrunner.gnm1.ann1.1D6AAZ Arachis hypogaea HOM05D000358 ORTHO05D009346 5.8e-08 61.2 125 36.0
arahy.Tifrunner.gnm1.ann1.M7C8NM Arachis hypogaea HOM05D000358 ORTHO05D009346 5.8e-08 61.2 125 36.0
PGR044G2401 Punica granatum HOM05D000358 ORTHO05D009346 7.6e-08 60.8 130 34.6
VMungo1383G1528 Vigna mungo HOM05D000358 ORTHO05D009346 7.6e-08 60.8 194 27.8
Migut.N02045 Erythranthe guttata HOM05D000358 ORTHO05D009346 9.9e-08 60.5 108 37.0
Hma1.2p1_0822F.1_g224420 Hydrangea macrophylla HOM05D000358 ORTHO05D009346 9.9e-08 60.5 36 77.8
THA.LOC104801239 Tarenaya hassleriana HOM05D000358 ORTHO05D009346 1.3e-07 60.1 151 29.8
HanXRQChr15g0466741 Helianthus annuus HOM05D000358 ORTHO05D009346 1.7e-07 59.7 103 36.9
Zm00001eb054110 Zea mays HOM05D000358 ORTHO05D009346 4.9e-07 58.2 102 35.3
Carub.0006s3438 Capsella rubella HOM05D000358 ORTHO05D009346 6.4e-07 57.8 125 30.4
ATR0332G065 Amborella trichopoda HOM05D000358 ORTHO05D009346 1.1e-06 57.0 86 40.7
SalBow6G4489 Salvia bowleyana HOM05D000358 ORTHO05D009346 1.1e-06 57.0 159 30.2
Solyc09g065300.4 Solanum lycopersicum HOM05D000358 ORTHO05D009346 1.4e-06 56.6 47 59.6
PGSC0003DMG400019331 Solanum tuberosum HOM05D000358 ORTHO05D009346 1.4e-06 56.6 47 59.6
Actinidia09124 Actinidia chinensis HOM05D000358 ORTHO05D009346 2.4e-06 55.8 100 36.0
Lj1g0011093 Lotus japonicus HOM05D000358 ORTHO05D009346 2.4e-06 55.8 170 28.2
AL6G50280 Arabidopsis lyrata HOM05D000358 ORTHO05D009346 3.2e-06 55.5 167 26.3
Sp6g02670 Schrenkiella parvula HOM05D000358 ORTHO05D009346 5.5e-06 54.7 167 26.9
CARHR251060 Cardamine hirsuta HOM05D000358 ORTHO05D009346 7.1e-06 54.3 167 26.9
Oeu029468.1 Olea europaea HOM05D000358 ORTHO05D009346 7.1e-06 54.3 91 42.9
AT4G02725 Arabidopsis thaliana HOM05D000358 ORTHO05D009346 9.3e-06 53.9 114 30.7


User provided reference genes

Program Settings