Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G1704 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.7e-47 192.2 90 100.0
FAN15G3711 Fragaria x ananassa HOM05D001143 ORTHO05D001457 1.2e-29 132.9 66 95.5
FvH4_2g07422 Fragaria vesca HOM05D005925 ORTHO05D007270 2.8e-29 131.7 66 95.5
RcHm_v2.0_Chr6g0261021 Rosa chinensis HOM05D005925 ORTHO05D007270 1.1e-28 129.8 66 93.9
Prupe.8G110200 Prunus persica HOM05D005925 ORTHO05D007270 5.4e-25 117.5 66 78.8
PGR142G0964 Punica granatum HOM05D005925 ORTHO05D007270 1.2e-24 116.3 89 60.7
MD10G1085900 Malus domestica HOM05D005925 ORTHO05D007270 2.7e-24 115.2 89 62.9
FvH4_5g27360 Fragaria vesca HOM05D005925 ORTHO05D007270 6.0e-24 114.0 66 75.8
Thecc.02G029300 Theobroma cacao HOM05D005925 ORTHO05D007270 6.0e-24 114.0 67 73.1
RcHm_v2.0_Chr6g0260971 Rosa chinensis HOM05D005925 ORTHO05D007270 1.7e-23 112.5 57 91.2
CANSAT25G2034 Cannabis sativa HOM05D005925 ORTHO05D007270 3.0e-23 111.7 67 76.1
Gohir.A03G214300 Gossypium hirsutum HOM05D005925 ORTHO05D007270 3.0e-23 111.7 67 74.6
Gohir.D02G235800 Gossypium hirsutum HOM05D005925 ORTHO05D007270 3.0e-23 111.7 67 74.6
Gorai.005G263900 Gossypium raimondii HOM05D005925 ORTHO05D007270 3.0e-23 111.7 67 74.6
CiPaw.05G059200 Carya illinoinensis HOM05D005925 ORTHO05D007270 3.9e-23 111.3 66 74.2
COL.COLO4_17783 Corchorus olitorius HOM05D005925 ORTHO05D007270 3.9e-23 111.3 67 71.6
Lalb_Chr01g0002931 Lupinus albus HOM05D005925 ORTHO05D007270 5.1e-23 110.9 67 74.6
QL11p039405 Quercus lobata HOM05D005925 ORTHO05D007270 8.6e-23 110.2 66 71.2
TAR628G0202 Trochodendron aralioides HOM05D005925 ORTHO05D007270 8.6e-23 110.2 67 73.1
FvH4_5g16250 Fragaria vesca HOM05D005925 ORTHO05D007270 1.1e-22 109.8 55 92.7
Lsat_1_v5_gn_5_117341 Lactuca sativa HOM05D005925 ORTHO05D007270 1.1e-22 109.8 88 60.2
Sc14g0001730 Simmondsia chinensis HOM05D005925 ORTHO05D007270 1.1e-22 109.8 67 68.7
Potri.004G148500 Populus trichocarpa HOM05D005925 ORTHO05D007270 1.5e-22 109.4 66 69.7
Potri.004G148700 Populus trichocarpa HOM05D005925 ORTHO05D007270 1.5e-22 109.4 66 69.7
Eucgr.I01229 Eucalyptus grandis HOM05D005925 ORTHO05D007270 1.9e-22 109.0 67 73.1
Medtr4g068475 Medicago truncatula HOM05D005925 ORTHO05D007270 1.9e-22 109.0 67 70.1
Psat7g207080 Pisum sativum HOM05D005925 ORTHO05D007270 1.9e-22 109.0 65 72.3
Sed0018300 Sechium edule HOM05D005925 ORTHO05D007270 1.9e-22 109.0 89 56.2
arahy.Tifrunner.gnm1.ann1.JZQ5CR Arachis hypogaea HOM05D005925 ORTHO05D007270 2.5e-22 108.6 67 71.6
Duzib248G1621 Durio zibethinus HOM05D005925 ORTHO05D007270 2.5e-22 108.6 67 70.1
QL09p038983 Quercus lobata HOM05D005925 ORTHO05D007270 3.3e-22 108.2 66 69.7
arahy.Tifrunner.gnm1.ann1.EU6551 Arachis hypogaea HOM05D005925 ORTHO05D007270 4.3e-22 107.8 67 70.1
Hund00298 Selenicereus undatus HOM05D005925 ORTHO05D007270 4.3e-22 107.8 66 72.7
Hund00305 Selenicereus undatus HOM05D005925 ORTHO05D007270 4.3e-22 107.8 66 72.7
TWI31G0896 Tripterygium wilfordii HOM05D005925 ORTHO05D007270 5.6e-22 107.5 66 72.7
FAN04G2258 Fragaria x ananassa HOM05D005925 ORTHO05D007270 7.3e-22 107.1 77 67.5
Lj3g0007485 Lotus japonicus HOM05D005925 ORTHO05D007270 7.3e-22 107.1 67 68.7
Ca_20823_v3 Cicer arietinum L. HOM05D005925 ORTHO05D007270 9.5e-22 106.7 67 67.2
Haze_02451 Corylus avellana HOM05D005925 ORTHO05D007270 9.5e-22 106.7 66 69.7
GSVIVG01031883001 Vitis vinifera HOM05D005925 ORTHO05D007270 9.5e-22 106.7 66 66.7
HanXRQChr10g0307581 Helianthus annuus HOM05D005925 ORTHO05D007270 1.2e-21 106.3 66 74.2
TPR.G10224 Trifolium pratense HOM05D005925 ORTHO05D007270 1.2e-21 106.3 67 67.2
Glyma.11G122900 Glycine max HOM05D005925 ORTHO05D007270 1.6e-21 105.9 67 71.6
Glyma.12G047700 Glycine max HOM05D005925 ORTHO05D007270 1.6e-21 105.9 67 71.6
FAN08G3356 Fragaria x ananassa HOM05D005925 ORTHO05D007270 2.1e-21 105.5 77 66.2
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 2.1e-21 105.5 77 64.9
ATR0733G151 Amborella trichopoda HOM05D005925 ORTHO05D007270 2.8e-21 105.1 67 70.1
Aqoxy5G01754 Aquilegia oxysepala HOM05D005925 ORTHO05D007270 2.8e-21 105.1 66 72.7
Hma1.2p1_0584F.1_g183295 Hydrangea macrophylla HOM05D005925 ORTHO05D007270 3.6e-21 104.8 66 69.7
Nn6g32156 Nelumbo nucifera HOM05D005925 ORTHO05D007270 3.6e-21 104.8 67 70.1
THA.LOC104803449 Tarenaya hassleriana HOM05D005925 ORTHO05D007270 4.7e-21 104.4 67 67.2
Atru.chr5.2901 Acer truncatum HOM05D005925 ORTHO05D007270 6.2e-21 104.0 66 69.7
VMungo1127G2028 Vigna mungo HOM05D005925 ORTHO05D007270 6.2e-21 104.0 67 67.2
Manes.17G097200 Manihot esculenta HOM05D005925 ORTHO05D007270 8.1e-21 103.6 66 66.7
Cfa004956 Carpinus fangiana HOM05D005925 ORTHO05D007270 1.4e-20 102.8 66 68.2
MELO3C018414.2 Cucumis melo HOM05D005925 ORTHO05D007270 1.4e-20 102.8 89 52.8
MBI16_g31334_MAGBIO Magnolia biondii HOM05D005925 ORTHO05D007270 1.4e-20 102.8 65 69.2
CsaV3_7G010150 Cucumis sativus L. HOM05D005925 ORTHO05D007270 1.8e-20 102.4 89 53.9
ECA234G0394 Erigeron canadensis HOM05D005925 ORTHO05D000001 1.8e-20 102.4 66 69.7
Lj9C365T5 Lonicera japonica HOM05D005925 ORTHO05D007270 1.8e-20 102.4 66 66.7
Migut.N01222 Erythranthe guttata HOM05D005925 ORTHO05D007270 3.1e-20 101.7 67 65.7
Phvul.011G049700 Phaseolus vulgaris HOM05D005925 ORTHO05D007270 3.1e-20 101.7 65 67.7
HPP92_015723 Vanilla planifolia HOM05D005925 ORTHO05D007270 5.2e-20 100.9 67 65.7
Rhsim05G0078300 Rhododendron simsii HOM05D005925 ORTHO05D007270 6.8e-20 100.5 65 70.8
vmacro22671 Vaccinium macrocarpon HOM05D005925 ORTHO05D007270 6.8e-20 100.5 66 69.7
Ah.01g019810 Amaranthus hybridus HOM05D005925 ORTHO05D007270 8.9e-20 100.1 87 50.6
EL10Ac9g21785 Beta vulgaris HOM05D005925 ORTHO05D007270 8.9e-20 100.1 66 63.6
Peaxi162Scf00016g01229 Petunia axillaris HOM05D005925 ORTHO05D007270 1.2e-19 99.8 67 62.7
MSTRG.27750 Avicennia marina HOM05D005925 ORTHO05D007270 1.5e-19 99.4 67 64.2
CAN.G322.90 Capsicum annuum HOM05D005925 ORTHO05D007270 2.0e-19 99.0 67 65.7
ClCG02G005470 Citrullus lanatus HOM05D005925 ORTHO05D007270 2.6e-19 98.6 97 49.5
Ciclev10029009m.g Citrus clementina HOM05D005925 ORTHO05D007270 3.4e-19 98.2 65 67.7
Oeu034077.1 Olea europaea HOM05D005925 ORTHO05D007270 3.4e-19 98.2 67 61.2
Solyc01g109130.3 Solanum lycopersicum HOM05D005925 ORTHO05D007270 3.4e-19 98.2 67 62.7
Sopen01g051330 Solanum pennellii HOM05D005925 ORTHO05D007270 3.4e-19 98.2 67 62.7
CDE01G0621 Ceratophyllum demersum HOM05D005925 ORTHO05D007270 4.4e-19 97.8 66 60.6
Cc02_g18140 Coffea canephora HOM05D005925 ORTHO05D007270 5.8e-19 97.4 67 62.7
Actinidia17837 Actinidia chinensis HOM05D005925 ORTHO05D007270 7.6e-19 97.1 66 65.2
PSO700G0338 Papaver somniferum HOM05D005925 ORTHO05D007270 7.6e-19 97.1 67 64.2
SGA_v2.0_scaffold55G19820 Striga asiatica HOM05D005925 ORTHO05D007270 7.6e-19 97.1 67 59.7
BcaC01g03666 Brassica carinata HOM05D005925 ORTHO05D007270 1.3e-18 96.3 65 64.6
C03p49920 Brassica napus HOM05D005925 ORTHO05D007270 1.3e-18 96.3 65 64.6
BolC3t17285H Brassica oleracea HOM05D005925 ORTHO05D007270 1.3e-18 96.3 65 64.6
PGSC0003DMG400025833 Solanum tuberosum HOM05D005925 ORTHO05D007270 1.3e-18 96.3 67 61.2
A03p40910 Brassica napus HOM05D005925 ORTHO05D007270 2.2e-18 95.5 65 64.6
BraA03t13250Z Brassica rapa HOM05D005925 ORTHO05D007270 2.2e-18 95.5 65 64.6
PSO170G4903 Papaver somniferum HOM05D005925 ORTHO05D007270 6.4e-18 94.0 67 62.7
AL3G32330 Arabidopsis lyrata HOM05D005925 ORTHO05D007270 1.1e-17 93.2 64 64.1
Nitab4.5_0012894g0020 Nicotiana tabacum HOM05D005925 ORTHO05D007270 1.4e-17 92.8 71 59.2
A05p30640 Brassica napus HOM05D005925 ORTHO05D007270 1.9e-17 92.4 65 63.1
Aa31LG8G5780 Aethionema arabicum HOM05D005925 ORTHO05D007270 2.4e-17 92.0 65 61.5
AT3G18940 Arabidopsis thaliana HOM05D005925 ORTHO05D007270 2.4e-17 92.0 65 63.1
CARHR094360 Cardamine hirsuta HOM05D005925 ORTHO05D007270 2.4e-17 92.0 65 63.1
Sp3g17030 Schrenkiella parvula HOM05D005925 ORTHO05D007270 2.4e-17 92.0 65 61.5
unitig_8.g3429 Utricularia gibba HOM05D005925 ORTHO05D007270 2.4e-17 92.0 67 55.2
Sabra04G0098600 Salix brachista HOM05D005925 ORTHO05D007270 3.2e-17 91.7 55 69.1
DCAR_003633 Daucus carota HOM05D005925 ORTHO05D007270 5.4e-17 90.9 66 62.1
C05p46520 Brassica napus HOM05D005925 ORTHO05D007270 9.2e-17 90.1 65 63.1
BolC5t33380H Brassica oleracea HOM05D005925 ORTHO05D007270 9.2e-17 90.1 65 63.1
Thhalv10021280m.g Eutrema salsugineum HOM05D005925 ORTHO05D007270 9.2e-17 90.1 65 61.5
AUR62011394 Chenopodium quinoa HOM05D005925 ORTHO05D007270 1.6e-16 89.4 64 56.2
FAN18G0119 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.6e-16 89.4 46 89.1
SalBow1G0951 Salvia bowleyana HOM05D005925 ORTHO05D007270 1.6e-16 89.4 67 56.7
BcaB06g25946 Brassica carinata HOM05D005925 ORTHO05D007270 2.7e-16 88.6 64 62.5
BraA05t21906Z Brassica rapa HOM05D005925 ORTHO05D007270 2.7e-16 88.6 65 61.5
Carub.0003s1876 Capsella rubella HOM05D005925 ORTHO05D007270 3.5e-16 88.2 65 58.5
SalBow3G3631 Salvia bowleyana HOM05D005925 ORTHO05D007270 7.8e-16 87.0 67 55.2
Mapoly0073s0081 Marchantia polymorpha HOM05D005925 ORTHO05D007270 1.7e-15 85.9 63 57.1
Os03g0766900 Oryza sativa ssp. japonica HOM05D005925 ORTHO05D007270 2.5e-14 82.0 66 57.6
Zm00001eb058630 Zea mays HOM05D005925 ORTHO05D007270 3.3e-14 81.6 66 59.1
SEGI_01484 Sequoiadendron giganteum HOM05D005925 ORTHO05D007270 4.3e-14 81.3 55 61.8
FAN24G2811 Fragaria x ananassa HOM05D001143 ORTHO05D007270 7.3e-14 80.5 41 87.8
SMO115G0205 Selaginella moellendorffii HOM05D005925 ORTHO05D007270 7.3e-14 80.5 63 52.4
Pp3c2_22470 Physcomitrium patens HOM05D005925 ORTHO05D007270 1.6e-13 79.3 65 53.8
Pp3c2_22478 Physcomitrium patens HOM05D005925 ORTHO05D007270 1.6e-13 79.3 65 53.8
BcaB04g19013 Brassica carinata HOM05D005925 ORTHO05D007270 8.1e-13 77.0 56 64.3
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 5.3e-12 74.3 66 54.5
Actinidia27921 Actinidia chinensis HOM05D005925 ORTHO05D007270 9.0e-12 73.6 66 51.5
CBR_g26043 Chara braunii HOM05D005925 ORTHO05D007270 1.5e-11 72.8 62 50.0
Haze_02453 Corylus avellana HOM05D005925 ORTHO05D007270 6.0e-08 60.8 35 65.7
SGA_v2.0_scaffold13G06566 Striga asiatica HOM05D005925 ORTHO05D007270 4.3e-06 54.7 67 41.8


User provided reference genes

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