Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.0e-254 882.1 509 100.0
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.1e-242 841.6 509 96.1
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.9e-239 832.4 509 95.1
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 2.1e-235 818.9 509 93.1
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 9.0e-210 733.8 510 83.7
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 6.3e-155 551.6 382 88.0
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.4e-138 497.3 380 82.1
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 1.1e-135 487.6 548 55.1
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 2.6e-132 476.5 551 57.4
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 2.9e-131 473.0 554 57.4
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 1.1e-114 417.9 558 47.8
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 2.4e-114 416.8 542 52.8
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 3.2e-114 416.4 526 54.9
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 3.2e-114 416.4 553 52.4
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 9.3e-114 414.8 554 49.1
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 3.5e-113 412.9 549 48.3
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 4.6e-113 412.5 554 50.4
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 4.6e-113 412.5 549 48.3
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 1.0e-112 411.4 567 52.0
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 8.7e-112 408.3 552 47.6
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.9e-111 407.1 551 47.0
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.9e-111 407.1 549 48.1
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 9.6e-111 404.8 561 51.2
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 6.2e-110 402.1 549 48.6
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 8.1e-110 401.7 544 50.2
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.1e-109 401.4 558 50.5
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 1.8e-109 400.6 528 48.1
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 2.4e-109 400.2 538 52.6
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 1.2e-108 397.9 544 51.8
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.2e-108 397.9 572 49.0
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 2.6e-108 396.7 562 47.9
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 1.3e-107 394.4 539 52.7
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 2.2e-107 393.7 550 51.5
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 2.9e-107 393.3 567 50.3
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 1.1e-106 391.3 552 50.4
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 2.4e-106 390.2 535 51.6
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 7.1e-106 388.7 567 48.5
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 9.3e-106 388.3 542 51.5
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 1.6e-105 387.5 544 49.3
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 4.6e-105 386.0 554 48.6
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 6.0e-105 385.6 565 45.7
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 1.3e-104 384.4 544 51.1
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 3.9e-104 382.9 515 52.8
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 6.7e-104 382.1 547 48.1
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.5e-103 380.9 269 78.1
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 4.3e-103 379.4 551 45.4
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 5.6e-103 379.0 561 47.6
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 1.3e-102 377.9 567 48.7
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 2.1e-102 377.1 529 47.3
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 2.1e-102 377.1 528 48.7
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 6.2e-102 375.6 603 44.9
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 1.1e-101 374.8 532 51.1
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 1.4e-101 374.4 541 45.7
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 1.4e-101 374.4 541 45.7
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 2.4e-101 373.6 541 46.4
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 4.0e-101 372.9 532 47.9
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 4.0e-101 372.9 552 48.4
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 6.9e-101 372.1 549 46.3
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 4.5e-100 369.4 534 53.7
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 5.8e-100 369.0 558 49.5
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.1e-98 364.8 549 50.8
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.6e-97 360.9 560 48.6
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 6.0e-97 359.0 566 42.4
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 1.0e-96 358.2 535 49.7
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 1.3e-96 357.8 569 42.5
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 1.8e-96 357.5 530 49.2
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 1.8e-96 357.5 529 44.8
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 3.0e-96 356.7 506 46.8
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.1e-95 354.8 534 48.9
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.1e-95 354.8 532 48.9
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.1e-95 354.8 554 44.8
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 2.5e-95 353.6 540 48.1
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 2.5e-95 353.6 543 47.0
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 9.6e-95 351.7 617 44.6
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 2.8e-94 350.1 545 44.6
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.1e-93 348.2 573 45.7
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 2.4e-93 347.1 542 46.1
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 5.3e-93 345.9 532 47.6
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 5.3e-93 345.9 525 47.2
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 5.3e-93 345.9 545 42.9
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 6.9e-93 345.5 545 50.6
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.2e-92 344.7 242 85.5
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 1.5e-92 344.4 542 46.3
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 2.0e-92 344.0 549 41.7
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 2.6e-92 343.6 519 46.6
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 3.4e-92 343.2 531 46.3
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 3.4e-92 343.2 526 47.3
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 4.5e-92 342.8 533 42.4
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 1.3e-91 341.3 524 48.5
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 2.9e-91 340.1 520 47.5
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 6.5e-91 339.0 544 46.1
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 3.2e-90 336.7 523 47.2
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 4.2e-90 336.3 470 47.0
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 7.1e-90 335.5 518 48.5
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 7.1e-90 335.5 541 45.5
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 9.3e-90 335.1 525 47.4
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 1.6e-89 334.3 529 46.5
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 2.7e-89 333.6 532 43.8
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 3.0e-88 330.1 539 46.0
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 3.9e-88 329.7 528 42.6
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 2.5e-87 327.0 542 47.0
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 2.5e-87 327.0 542 47.0
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 3.7e-86 323.2 477 45.5
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.8e-85 320.9 201 91.0
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 9.0e-85 318.5 541 44.0
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 5.0e-83 312.8 562 41.1
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 5.0e-83 312.8 522 42.3
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 1.1e-82 311.6 510 42.2
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 2.1e-81 307.4 471 43.7
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 2.0e-76 290.8 563 38.4
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 3.4e-76 290.0 410 47.1
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 4.5e-76 289.7 552 42.2
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 7.7e-76 288.9 527 41.4
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 2.3e-72 277.3 564 37.9
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 5.1e-72 276.2 301 55.5
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 1.7e-67 261.2 250 59.6
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 2.0e-63 247.7 348 47.7
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 4.4e-63 246.5 731 34.3
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.7e-59 234.6 236 64.8
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 2.1e-57 227.6 314 44.9
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 1.4e-56 224.9 523 40.7
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 2.3e-56 224.2 527 41.9
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 2.3e-56 224.2 594 32.3
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 1.4e-53 214.9 520 40.0
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 1.4e-53 214.9 520 40.0
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 1.9e-42 177.9 573 33.5
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 3.6e-41 173.7 184 56.5
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 1.5e-39 168.3 296 40.9
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 2.2e-38 164.5 596 29.4
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 6.3e-38 162.9 140 69.3
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 1.5e-31 141.7 227 52.0
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 1.6e-28 131.7 427 30.2
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 6.6e-27 126.3 726 25.2
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.1e-24 119.0 492 30.5
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 2.3e-19 101.3 415 27.2
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 3.0e-19 100.9 88 58.0
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 4.7e-17 93.6 220 35.5
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 5.4e-13 80.1 476 25.6
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 9.2e-13 79.3 176 33.5
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.6e-12 78.6 128 41.4
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 2.1e-12 78.2 132 43.9
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 6.0e-12 76.6 407 27.0
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 1.0e-11 75.9 109 46.8
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.1e-10 72.4 106 43.4
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 5.6e-10 70.1 101 44.6
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 3.6e-09 67.4 153 38.6
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 1.1e-08 65.9 354 24.3
RcHm_v2.0_Chr1g0360321 Rosa chinensis HOM05D004539 ORTHO05D005482 2.0e-07 61.6 43 79.1


User provided reference genes

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