Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G1602 Fragaria x ananassa HOM05D006737 ORTHO05D008418 8.6e-190 666.8 325 100.0
FAN27G1696 Fragaria x ananassa HOM05D006737 ORTHO05D008418 8.7e-174 613.6 326 93.3
FAN15G3576 Fragaria x ananassa HOM05D006737 ORTHO05D008418 1.1e-171 606.7 313 95.5
FvH4_2g25800 Fragaria vesca HOM05D006737 ORTHO05D008418 1.8e-171 605.9 313 95.2
FAN24G1027 Fragaria x ananassa HOM05D006737 ORTHO05D008418 1.8e-171 605.9 313 95.2
RcHm_v2.0_Chr6g0294111 Rosa chinensis HOM05D006737 ORTHO05D008418 7.9e-159 563.9 315 88.9
Prupe.8G262100 Prunus persica HOM05D006737 ORTHO05D008418 1.3e-140 503.4 314 79.6
MD03G1288800 Malus domestica HOM05D006737 ORTHO05D008418 1.7e-137 493.0 315 76.2
MD11G1309100 Malus domestica HOM05D006737 ORTHO05D008418 9.4e-136 487.3 314 77.4
Haze_04944 Corylus avellana HOM05D006737 ORTHO05D008418 1.2e-130 470.3 313 74.4
Cfa005906 Carpinus fangiana HOM05D006737 ORTHO05D008418 4.5e-130 468.4 315 74.0
Potri.002G203900 Populus trichocarpa HOM05D006737 ORTHO05D008418 1.1e-123 447.2 314 71.7
Atru.chr5.1140 Acer truncatum HOM05D006737 ORTHO05D008418 2.4e-123 446.0 314 68.8
Ciclev10021225m.g Citrus clementina HOM05D006737 ORTHO05D008418 3.1e-123 445.7 313 69.3
CiPaw.07G109800 Carya illinoinensis HOM05D006737 ORTHO05D008418 1.3e-121 440.3 350 63.4
Manes.01G219800 Manihot esculenta HOM05D006737 ORTHO05D008418 2.2e-121 439.5 310 70.0
Sabra02G0155300 Salix brachista HOM05D006737 ORTHO05D008418 8.0e-119 431.0 356 62.1
TWI14G0449 Tripterygium wilfordii HOM05D006737 ORTHO05D008418 2.6e-117 426.0 313 67.1
CiPaw.07G109600 Carya illinoinensis HOM05D006737 ORTHO05D008418 2.2e-116 422.9 251 77.7
QL12p028401 Quercus lobata HOM05D006737 ORTHO05D008418 4.7e-111 405.2 313 64.2
CSS0030900 Camellia sinensis var. sinensis HOM05D006737 ORTHO05D008418 2.3e-110 402.9 312 66.7
Cpa.g.sc9.256 Carica papaya HOM05D006737 ORTHO05D008418 4.0e-110 402.1 299 65.2
GSVIVG01028025001 Vitis vinifera HOM05D006737 ORTHO05D008418 4.0e-110 402.1 310 63.5
Thecc.01G301300 Theobroma cacao HOM05D006737 ORTHO05D008418 1.2e-109 400.6 350 60.3
vmacro02447 Vaccinium macrocarpon HOM05D006737 ORTHO05D008418 4.4e-109 398.7 308 65.6
Gorai.008G144900 Gossypium raimondii HOM05D006737 ORTHO05D008418 6.3e-108 394.8 320 62.5
Gohir.D08G085900 Gossypium hirsutum HOM05D006737 ORTHO05D008418 4.1e-107 392.1 280 68.2
Gohir.D12G133900 Gossypium hirsutum HOM05D006737 ORTHO05D008418 4.1e-107 392.1 320 62.2
CANSAT25G2451 Cannabis sativa HOM05D006737 ORTHO05D008418 5.4e-107 391.7 314 62.4
Gorai.004G090400 Gossypium raimondii HOM05D006737 ORTHO05D008418 7.0e-107 391.3 280 68.2
Gohir.A08G076400 Gossypium hirsutum HOM05D006737 ORTHO05D008418 9.2e-107 391.0 280 67.9
Gohir.A12G130100 Gossypium hirsutum HOM05D006737 ORTHO05D008418 2.7e-106 389.4 304 63.2
Nn3g21504 Nelumbo nucifera HOM05D006737 ORTHO05D008418 5.0e-105 385.2 311 61.7
TAR365G0544 Trochodendron aralioides HOM05D006737 ORTHO05D008418 1.9e-104 383.3 320 62.2
Eucgr.H01107 Eucalyptus grandis HOM05D006737 ORTHO05D008418 2.8e-103 379.4 283 65.0
Rhsim13G0009900 Rhododendron simsii HOM05D006737 ORTHO05D008418 7.5e-101 371.3 320 60.3
Hma1.2p1_0491F.1_g164620 Hydrangea macrophylla HOM05D006737 ORTHO05D008418 2.9e-100 369.4 296 63.5
Lj6g0001904 Lotus japonicus HOM05D006737 ORTHO05D008418 1.4e-99 367.1 277 63.5
Hund05430 Selenicereus undatus HOM05D006737 ORTHO05D008418 1.2e-98 364.0 307 57.3
PGR119G0152 Punica granatum HOM05D006737 ORTHO05D008418 3.9e-97 359.0 313 57.2
Duzib138G1512 Durio zibethinus HOM05D006737 ORTHO05D008418 5.0e-97 358.6 267 67.4
Actinidia01489 Actinidia chinensis HOM05D006737 ORTHO05D008418 4.3e-96 355.5 232 72.0
Aqoxy2G02933 Aquilegia oxysepala HOM05D006737 ORTHO05D008418 4.3e-96 355.5 289 61.9
Glyma.19G211400 Glycine max HOM05D006737 ORTHO05D008418 1.2e-95 354.0 278 61.5
MBI19_g26092_MAGBIO Magnolia biondii HOM05D006737 ORTHO05D008418 2.1e-95 353.2 336 53.9
Aa31LG5G2050 Aethionema arabicum HOM05D006737 ORTHO05D008418 1.2e-93 347.4 299 57.5
MSTRG.12607 Avicennia marina HOM05D006737 ORTHO05D008418 2.6e-93 346.3 319 55.2
ClCG01G014930 Citrullus lanatus HOM05D006737 ORTHO05D008418 2.6e-93 346.3 306 58.5
SalBow2G2271 Salvia bowleyana HOM05D006737 ORTHO05D008418 3.7e-92 342.4 277 57.4
Lsat_1_v5_gn_8_164261 Lactuca sativa HOM05D006737 ORTHO05D008418 6.4e-92 341.7 316 55.1
Phvul.001G207600 Phaseolus vulgaris HOM05D006737 ORTHO05D008418 6.4e-92 341.7 278 60.1
CsaV3_6G041030 Cucumis sativus L. HOM05D006737 ORTHO05D008418 1.9e-91 340.1 306 57.2
EL10Ac7g17513 Beta vulgaris HOM05D006737 ORTHO05D008418 4.1e-91 339.0 278 58.6
VMungo1383G2597 Vigna mungo HOM05D006737 ORTHO05D008418 1.6e-90 337.0 250 63.6
DCAR_002840 Daucus carota HOM05D006737 ORTHO05D008418 2.7e-90 336.3 308 55.2
AL6G50710 Arabidopsis lyrata HOM05D006737 ORTHO05D008418 3.5e-90 335.9 306 56.2
arahy.Tifrunner.gnm1.ann1.AY1VU4 Arachis hypogaea HOM05D006737 ORTHO05D008418 3.5e-90 335.9 269 59.5
MELO3C024580.2 Cucumis melo HOM05D006737 ORTHO05D008418 3.5e-90 335.9 306 56.5
Thhalv10028823m.g Eutrema salsugineum HOM05D006737 ORTHO05D008418 3.5e-90 335.9 306 55.2
PSO170G1161 Papaver somniferum HOM05D006737 ORTHO05D008418 6.0e-90 335.1 288 57.6
PSO407G0435 Papaver somniferum HOM05D006737 ORTHO05D008418 5.0e-89 332.0 294 56.5
BcaC01g06761 Brassica carinata HOM05D006737 ORTHO05D008418 6.6e-89 331.6 307 54.4
Sopen06g035940 Solanum pennellii HOM05D006737 ORTHO05D008418 1.1e-88 330.9 280 58.2
C03p37890 Brassica napus HOM05D006737 ORTHO05D008418 1.5e-88 330.5 318 52.5
BcaB01g02446 Brassica carinata HOM05D006737 ORTHO05D008418 3.3e-88 329.3 305 54.8
BolC3t16077H Brassica oleracea HOM05D006737 ORTHO05D008418 5.6e-88 328.6 317 52.4
AUR62008669 Chenopodium quinoa HOM05D006737 ORTHO05D008418 7.3e-88 328.2 271 59.0
Oeu048335.1 Olea europaea HOM05D006737 ORTHO05D008418 9.5e-88 327.8 230 66.5
Carub.0006s3475 Capsella rubella HOM05D006737 ORTHO05D008418 1.2e-87 327.4 306 55.6
Sc05g0003760 Simmondsia chinensis HOM05D006737 ORTHO05D008418 1.6e-87 327.0 279 57.7
CARHR250600 Cardamine hirsuta HOM05D006737 ORTHO05D008418 2.8e-87 326.2 305 54.8
Peaxi162Scf00140g01213 Petunia axillaris HOM05D006737 ORTHO05D008418 3.6e-87 325.9 262 59.9
Solyc06g084570.4 Solanum lycopersicum HOM05D006737 ORTHO05D008418 4.7e-87 325.5 284 57.0
ECA236G1530 Erigeron canadensis HOM05D006737 ORTHO05D008418 6.2e-87 325.1 283 56.5
COL.COLO4_23338 Corchorus olitorius HOM05D006737 ORTHO05D008418 8.1e-87 324.7 205 73.2
Nitab4.5_0004367g0110 Nicotiana tabacum HOM05D006737 ORTHO05D008418 1.1e-86 324.3 359 48.5
SGA_v2.0_scaffold198G41142 Striga asiatica HOM05D006737 ORTHO05D008418 1.4e-86 323.9 288 55.2
A03p31080 Brassica napus HOM05D006737 ORTHO05D008418 1.8e-86 323.6 316 52.2
BraA03t12285Z Brassica rapa HOM05D006737 ORTHO05D008418 1.8e-86 323.6 316 52.2
CAN.G1209.24 Capsicum annuum HOM05D006737 ORTHO05D008418 1.8e-86 323.6 301 54.5
Sp6g02290 Schrenkiella parvula HOM05D006737 ORTHO05D008418 5.2e-86 322.0 308 54.9
Lalb_Chr02g0146391 Lupinus albus HOM05D006737 ORTHO05D008418 6.8e-86 321.6 302 54.6
AUR62025575 Chenopodium quinoa HOM05D006737 ORTHO05D008418 2.0e-85 320.1 278 56.8
Cc01_g20900 Coffea canephora HOM05D006737 ORTHO05D008418 2.0e-85 320.1 304 53.0
arahy.Tifrunner.gnm1.ann1.B4PCIP Arachis hypogaea HOM05D006737 ORTHO05D008418 4.9e-84 315.5 270 58.1
MBI19_g25361_MAGBIO Magnolia biondii HOM05D006737 ORTHO05D008418 2.1e-82 310.1 351 47.9
CDE01G0235 Ceratophyllum demersum HOM05D006737 ORTHO05D008418 1.5e-80 303.9 288 52.8
HanXRQChr04g0114161 Helianthus annuus HOM05D006737 ORTHO05D008418 2.1e-79 300.1 256 56.6
AT4G02405 Arabidopsis thaliana HOM05D006737 ORTHO05D008418 3.4e-77 292.7 284 53.5
Migut.N01508 Erythranthe guttata HOM05D006737 ORTHO05D008418 7.6e-77 291.6 250 57.6
Migut.O00484 Erythranthe guttata HOM05D006737 ORTHO05D008418 7.6e-77 291.6 250 57.6
Migut.J01135 Erythranthe guttata HOM05D006737 ORTHO05D008418 5.4e-75 285.4 250 57.2
Lj2A1195G25 Lonicera japonica HOM05D006737 ORTHO05D008418 1.3e-68 264.2 263 52.9
Os07g0247100 Oryza sativa ssp. japonica HOM05D006737 ORTHO05D008418 4.6e-66 255.8 287 44.3
Zm00001eb097030 Zea mays HOM05D006737 ORTHO05D008418 3.3e-64 249.6 284 45.4
Sed0017513 Sechium edule HOM05D006737 ORTHO05D008418 2.1e-63 246.9 232 55.6
Dinv33057 Davidia involucrata HOM05D006737 ORTHO05D008418 2.6e-45 186.8 156 62.2
Oeu010666.1 Olea europaea HOM05D006737 ORTHO05D008418 2.1e-42 177.2 131 61.8
Nitab4.5_0002820g0110 Nicotiana tabacum HOM05D006737 ORTHO05D008418 4.3e-40 169.5 135 58.5
Pp3c24_12380 Physcomitrium patens HOM05D006737 ORTHO05D008418 4.3e-40 169.5 286 37.8
Mapoly0132s0018 Marchantia polymorpha HOM05D006737 ORTHO05D008418 6.7e-33 145.6 238 35.3
PGSC0003DMG400024036 Solanum tuberosum HOM05D006737 ORTHO05D008418 7.4e-32 142.1 125 56.0
arahy.Tifrunner.gnm1.ann1.MB1A81 Arachis hypogaea HOM05D006737 ORTHO05D008418 9.7e-32 141.7 119 54.6
VMungo1383G3174 Vigna mungo HOM05D006737 ORTHO05D008418 3.4e-29 133.3 257 33.9
arahy.Tifrunner.gnm1.ann1.MU6BTE Arachis hypogaea HOM05D006737 ORTHO05D008418 4.2e-27 126.3 121 50.4
Dinv07247 Davidia involucrata HOM05D006737 ORTHO05D008418 3.9e-25 119.8 90 61.1
Dinv31287 Davidia involucrata HOM05D006737 ORTHO05D008418 3.9e-25 119.8 90 61.1
SEGI_39136 Sequoiadendron giganteum HOM05D006737 ORTHO05D008418 9.1e-22 108.6 141 39.7
Dinv17961 Davidia involucrata HOM05D006737 ORTHO05D008418 2.0e-21 107.5 86 57.0
BcaB01g02447 Brassica carinata HOM05D006737 ORTHO05D008418 9.1e-14 82.0 69 58.0
Dinv02523 Davidia involucrata HOM05D006737 ORTHO05D008418 4.5e-13 79.7 55 65.5
BcaB01g02050 Brassica carinata HOM05D006737 ORTHO05D008418 5.5e-11 72.8 97 41.2
Dinv32677 Davidia involucrata HOM05D006737 ORTHO05D008418 5.5e-11 72.8 53 62.3
MCO02G241 Micromonas commoda HOM05D006737 ORTHO05D008418 1.5e-08 64.7 133 26.3
Cre09.g387282 Chlamydomonas reinhardtii HOM05D006737 ORTHO05D008418 1.8e-06 57.8 96 41.7
PGR031G2630 Punica granatum HOM05D006598 ORTHO05D008132 3.1e-06 57.0 111 32.4


User provided reference genes

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