Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 2103.9 1098 100.0
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 2063.1 1111 97.2
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 2060.4 1108 97.6
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 2058.1 1110 97.3
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 2050.4 1111 96.8
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1982.2 1110 94.0
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1637.9 1110 78.7
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1539.6 1125 73.6
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1534.2 1124 72.7
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1517.7 1130 72.3
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1474.9 1113 71.8
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1459.9 1114 70.6
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1453.7 1120 68.4
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1439.1 1117 67.9
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1436.8 1115 68.4
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1436.4 1073 71.8
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1436.0 1130 68.1
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1436.0 1116 69.6
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1435.2 1013 73.5
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1425.6 1111 70.0
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1424.8 1132 68.6
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1419.1 1079 70.6
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1417.9 1120 68.6
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1413.7 1052 69.7
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1411.0 1116 69.4
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1407.9 1106 67.2
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1405.2 1111 66.2
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1401.0 1107 68.3
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1400.2 1106 68.0
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1397.5 1121 65.7
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1396.3 1123 67.4
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1390.9 1106 67.6
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1388.2 1107 67.0
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1385.5 992 72.2
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1383.6 1115 68.4
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1375.9 1186 65.1
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1373.6 1112 65.9
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1368.2 1120 65.3
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1362.8 1124 64.5
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1361.3 1115 64.1
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1359.0 1119 66.0
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1346.6 1226 61.4
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1339.3 1146 62.7
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1335.1 1124 63.6
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1333.5 1120 63.6
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1320.1 1117 62.3
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1318.5 1074 64.7
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1304.7 1130 62.3
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1303.9 1151 62.4
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1302.0 1119 64.3
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1300.8 1119 64.9
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1295.8 1076 64.5
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1295.4 1132 60.7
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1291.9 1104 61.4
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1285.8 1005 65.7
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1282.3 1110 61.3
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1280.8 1056 64.2
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1280.4 1103 61.1
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1278.1 1115 61.3
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1277.3 1072 63.1
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1276.9 1071 64.0
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1275.0 1045 65.3
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1274.6 1136 59.9
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1273.8 1120 60.4
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1272.7 1052 62.0
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1271.5 1107 63.4
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1270.4 1115 60.4
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1267.3 1103 60.6
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1264.2 1081 63.5
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1261.1 1085 60.3
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1260.7 1091 61.6
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1260.7 1052 61.2
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1260.4 1114 61.8
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1260.0 1103 61.9
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1255.7 1120 59.4
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1251.5 1107 59.1
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1249.6 1135 63.3
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1240.7 1068 60.1
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1239.9 1095 58.9
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1239.9 1081 63.9
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1239.6 1062 62.9
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1236.1 1107 60.8
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1234.2 1078 59.2
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1229.2 1080 59.1
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1226.1 1108 59.1
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1225.3 1078 58.9
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1223.4 1078 58.7
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1221.1 1090 58.6
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1218.0 1022 61.3
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1209.1 1066 59.8
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1202.6 898 69.8
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1201.8 1378 49.8
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1199.9 1071 60.1
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1171.8 1089 56.0
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1155.2 1047 58.7
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1152.9 1093 58.8
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1144.0 1060 57.0
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1132.5 1098 56.8
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1130.9 870 70.6
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1107.8 1031 55.7
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1102.0 1101 54.0
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1077.0 888 63.2
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 5.7e-310 1067.8 1020 56.4
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 2.6e-299 1032.3 813 66.5
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 4.7e-296 1021.5 1084 53.4
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 4.1e-284 981.9 1041 53.6
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.0e-283 979.5 674 73.7
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 6.1e-280 968.0 1029 52.1
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 4.5e-275 951.8 1057 49.5
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 1.0e-271 940.6 772 63.1
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 9.5e-257 891.0 965 47.8
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 2.1e-256 889.8 1086 45.0
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 2.3e-242 843.2 665 69.0
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 4.2e-236 822.4 1057 45.2
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 7.6e-214 748.4 533 73.0
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 7.6e-214 748.4 533 73.0
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.1e-199 701.4 583 63.5
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 7.2e-188 662.1 1037 39.1
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 1.1e-148 531.9 386 72.8
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 4.1e-90 337.4 399 49.1
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 5.2e-61 240.7 201 60.2
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 9.1e-58 229.9 613 27.9
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.6e-52 211.8 216 52.8
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 1.1e-47 196.4 165 61.8
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 4.4e-44 184.5 172 56.4
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 3.5e-41 174.9 146 61.6
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 1.0e-40 173.3 135 63.0
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 3.3e-39 168.3 174 54.6
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 5.4e-34 151.0 396 30.1
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 3.5e-33 148.3 499 26.3
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 6.6e-32 144.1 162 51.9
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 2.4e-26 125.6 140 49.3
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 5.6e-23 114.4 122 52.5
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 5.2e-21 107.8 98 58.2
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 1.0e-16 93.6 242 28.5
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 5.6e-15 87.8 105 45.7
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 8.1e-14 84.0 74 60.8
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 5.2e-13 81.3 86 57.0
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 1.9e-10 72.8 113 38.9
Nitab4.5_0000282g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 2.1e-09 69.3 84 47.6
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 3.5e-09 68.6 68 52.9
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 1.1e-07 63.5 38 68.4
COL.COLO4_03377 Corchorus olitorius HOM05D004682 ORTHO05D006197 3.3e-07 62.0 80 68.8
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 1.6e-06 59.7 118 36.4
Solyc03g051710.1 Solanum lycopersicum HOM05D004682 ORTHO05D006197 3.6e-06 58.5 49 57.1
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 8.1e-06 57.4 93 37.6


User provided reference genes

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