Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 6.4e-193 677.2 326 100.0
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 3.4e-178 628.2 336 91.4
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.4e-171 605.5 325 92.0
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 3.9e-166 588.2 352 84.7
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 8.7e-166 587.0 366 81.1
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 4.1e-155 551.6 355 77.2
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 2.0e-146 522.7 366 73.0
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 3.3e-141 505.4 345 72.5
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 2.2e-140 502.7 345 72.2
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 6.3e-140 501.1 340 73.5
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 3.1e-139 498.8 355 69.6
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 5.3e-139 498.0 340 72.4
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 7.7e-138 494.2 361 69.0
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 6.5e-137 491.1 361 69.0
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 1.1e-136 490.3 344 70.1
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.9e-136 489.6 361 68.4
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 2.5e-136 489.2 352 69.6
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 3.2e-136 488.8 357 68.3
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 4.2e-136 488.4 335 72.2
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 5.5e-136 488.0 363 68.6
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 7.2e-136 487.6 353 69.4
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 9.4e-136 487.3 340 71.5
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 9.4e-136 487.3 360 67.8
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 9.4e-136 487.3 354 69.2
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 9.4e-136 487.3 341 71.0
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 1.6e-135 486.5 342 69.6
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 2.7e-135 485.7 356 68.8
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 2.7e-135 485.7 350 70.0
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 2.7e-135 485.7 342 69.9
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 8.0e-135 484.2 343 70.3
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 8.0e-135 484.2 369 68.8
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 4.4e-133 478.4 379 66.0
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 5.7e-133 478.0 353 68.8
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 1.7e-132 476.5 337 70.3
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 1.7e-132 476.5 352 68.8
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 2.2e-132 476.1 337 70.0
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.8e-131 473.0 378 65.6
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 5.3e-131 471.5 344 70.1
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 5.3e-131 471.5 336 68.8
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 1.2e-130 470.3 358 66.5
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.6e-130 469.9 353 67.1
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.6e-130 469.9 353 67.1
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 2.7e-130 469.2 339 69.9
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 7.7e-130 467.6 353 66.6
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.0e-129 467.2 347 67.4
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 2.2e-129 466.1 344 67.2
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 2.9e-129 465.7 358 66.2
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 3.8e-129 465.3 345 67.0
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 6.5e-129 464.5 338 68.3
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 8.5e-129 464.2 375 64.3
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.9e-128 463.0 353 65.4
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 1.9e-128 463.0 333 70.3
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 3.2e-128 462.2 350 66.3
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 4.2e-128 461.8 350 66.3
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 4.2e-128 461.8 345 66.4
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 4.2e-128 461.8 349 67.3
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 4.2e-128 461.8 350 66.6
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 4.2e-128 461.8 350 66.3
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 4.2e-128 461.8 359 65.2
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 7.2e-128 461.1 358 65.6
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.2e-127 460.3 351 65.5
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.6e-127 459.9 356 65.2
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 1.8e-126 456.4 353 65.4
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.3e-126 456.1 337 68.5
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 4.0e-126 455.3 352 65.6
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 6.8e-126 454.5 345 66.1
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 6.8e-126 454.5 351 65.0
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 6.8e-126 454.5 352 65.6
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 2.6e-125 452.6 366 64.2
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 5.7e-125 451.4 350 64.6
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 5.7e-125 451.4 347 64.8
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 9.8e-125 450.7 341 66.9
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 9.8e-125 450.7 350 65.1
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 1.7e-124 449.9 347 64.8
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 2.2e-124 449.5 377 61.5
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.1e-123 447.2 337 67.7
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 1.4e-123 446.8 352 65.1
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 2.0e-122 443.0 335 67.2
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 2.7e-122 442.6 345 65.8
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 1.7e-121 439.9 347 65.4
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 2.3e-121 439.5 348 65.8
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 5.0e-121 438.3 353 64.9
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 6.5e-121 438.0 349 65.0
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 1.1e-120 437.2 347 66.0
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 1.9e-120 436.4 339 67.3
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 9.5e-120 434.1 349 65.3
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 1.2e-119 433.7 349 65.6
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 4.7e-119 431.8 336 65.8
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 1.8e-118 429.9 349 65.3
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.8e-118 429.9 356 64.0
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 3.0e-118 429.1 340 65.6
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 5.2e-118 428.3 349 64.2
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 6.8e-118 427.9 344 65.4
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 6.8e-118 427.9 344 65.4
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 6.8e-118 427.9 336 64.6
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 5.7e-117 424.9 349 64.5
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 7.5e-117 424.5 349 64.5
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 1.7e-116 423.3 351 62.7
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 2.2e-116 422.9 410 55.6
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 4.9e-116 421.8 349 63.9
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 8.3e-116 421.0 328 64.3
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 1.2e-114 417.2 342 64.9
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.2e-114 417.2 357 62.5
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 1.6e-114 416.8 342 64.6
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 1.6e-114 416.8 355 59.4
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 5.9e-114 414.8 338 65.7
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 7.8e-114 414.5 336 62.5
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 1.7e-113 413.3 332 65.7
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 5.0e-113 411.8 343 63.3
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 5.6e-112 408.3 344 61.3
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 9.5e-112 407.5 377 56.8
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 2.8e-111 406.0 348 61.8
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 8.0e-111 404.4 337 61.4
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 8.9e-110 401.0 336 63.4
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 1.2e-109 400.6 378 56.1
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 3.4e-109 399.1 337 62.9
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 6.4e-108 394.8 311 65.0
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 8.3e-108 394.4 327 62.1
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 1.1e-107 394.0 358 58.1
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 4.6e-106 388.7 355 58.6
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 1.0e-105 387.5 324 64.5
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.3e-105 387.1 368 56.2
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.6e-103 380.2 208 93.8
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 6.2e-103 378.3 319 62.4
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 1.2e-101 374.0 355 56.3
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 2.6e-101 372.9 335 56.7
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.3e-100 370.5 426 50.5
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 3.2e-99 365.9 519 43.0
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 3.2e-99 365.9 408 50.7
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 3.3e-96 355.9 330 56.4
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.8e-94 350.1 366 53.6
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 5.2e-94 348.6 313 59.4
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.5e-93 347.1 367 51.5
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 6.2e-87 325.1 318 56.6
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 4.3e-80 302.4 348 48.6
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 1.9e-75 287.0 368 44.3
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 9.3e-75 284.6 230 62.2
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 1.1e-70 271.2 379 43.8
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 2.4e-67 260.0 290 53.1
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 2.1e-63 246.9 340 41.2
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 2.8e-63 246.5 161 72.7
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 2.8e-63 246.5 376 41.2
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.1e-62 244.6 382 40.3
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 6.4e-60 235.3 230 62.6
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 6.4e-60 235.3 237 54.9
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 6.4e-60 235.3 237 54.9
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 6.0e-58 228.8 208 61.1
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 2.8e-55 219.9 400 36.8
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 2.0e-53 213.8 237 48.1
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 4.2e-51 206.1 187 60.4
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 2.7e-50 203.4 140 75.0
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 6.7e-49 198.7 160 64.4
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 1.2e-42 177.9 128 62.5
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 2.5e-35 153.7 363 31.1
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 9.7e-32 141.7 329 32.5
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 6.3e-31 139.0 122 57.4
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 9.1e-30 135.2 71 80.3
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 1.1e-27 128.3 72 76.4
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 6.1e-18 95.9 78 64.1
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.2e-16 91.7 69 62.3
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 2.8e-07 60.5 33 72.7


User provided reference genes

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