Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G1323 Fragaria x ananassa HOM05D002532 ORTHO05D006707 5.1e-81 304.7 193 100.0
FAN27G1487 Fragaria x ananassa HOM05D002532 ORTHO05D200071 2.0e-29 133.3 76 94.7
FvH4_1g10230 Fragaria vesca HOM05D002532 ORTHO05D006707 1.7e-20 103.6 58 89.7
FAN19G2472 Fragaria x ananassa HOM05D002532 ORTHO05D006707 5.0e-20 102.1 58 87.9
FAN24G0941 Fragaria x ananassa HOM05D002532 ORTHO05D202601 6.6e-20 101.7 60 96.7
FAN26G1735 Fragaria x ananassa HOM05D002532 ORTHO05D006707 1.5e-19 100.5 58 87.9
arahy.Tifrunner.gnm1.ann1.TG5HTD Arachis hypogaea HOM05D002532 ORTHO05D006707 3.3e-19 99.4 58 82.8
FAN28G1449 Fragaria x ananassa HOM05D002532 ORTHO05D006707 3.3e-19 99.4 58 86.2
CsaV3_4G023230 Cucumis sativus L. HOM05D002532 ORTHO05D006707 9.5e-19 97.8 58 84.5
Lalb_Chr20g0110251 Lupinus albus HOM05D002532 ORTHO05D006707 9.5e-19 97.8 58 81.0
Rhsim08G0153400 Rhododendron simsii HOM05D002532 ORTHO05D006707 9.5e-19 97.8 58 81.0
Ciclev10026688m.g Citrus clementina HOM05D002532 ORTHO05D006707 1.2e-18 97.4 58 82.8
COL.COLO4_22559 Corchorus olitorius HOM05D006556 ORTHO05D006707 1.2e-18 97.4 58 82.8
RcHm_v2.0_Chr2g0097051 Rosa chinensis HOM05D002532 ORTHO05D006707 1.2e-18 97.4 58 82.8
MELO3C014694.2 Cucumis melo HOM05D002532 ORTHO05D006707 2.1e-18 96.7 58 82.8
Sabra05G0084900 Salix brachista HOM05D002532 ORTHO05D006707 2.8e-18 96.3 58 81.0
SGA_v2.0_scaffold41G15743 Striga asiatica HOM05D002532 ORTHO05D006707 3.6e-18 95.9 58 81.0
Manes.02G114900 Manihot esculenta HOM05D002532 ORTHO05D006707 4.7e-18 95.5 58 81.0
Dinv28316 Davidia involucrata HOM05D002532 ORTHO05D006707 6.2e-18 95.1 58 79.3
Duzib147G0379 Durio zibethinus HOM05D002532 ORTHO05D006707 6.2e-18 95.1 58 81.0
PGR042G2789 Punica granatum HOM05D002532 ORTHO05D006707 6.2e-18 95.1 58 81.0
COL.COLO4_33100 Corchorus olitorius HOM05D002532 ORTHO05D006707 8.1e-18 94.7 58 79.3
Potri.007G058600 Populus trichocarpa HOM05D002532 ORTHO05D006707 8.1e-18 94.7 58 77.6
Sabra07G0050100 Salix brachista HOM05D002532 ORTHO05D006707 8.1e-18 94.7 58 79.3
Aqoxy4G00268 Aquilegia oxysepala HOM05D002532 ORTHO05D006707 1.1e-17 94.4 58 79.3
Gohir.D07G178400 Gossypium hirsutum HOM05D002532 ORTHO05D006707 1.1e-17 94.4 58 79.3
Gorai.001G199600 Gossypium raimondii HOM05D002532 ORTHO05D006707 1.1e-17 94.4 58 79.3
Lj2C501T8 Lonicera japonica HOM05D002532 ORTHO05D006707 1.1e-17 94.4 58 79.3
Lj2P500T30 Lonicera japonica HOM05D002532 ORTHO05D006707 1.1e-17 94.4 58 79.3
Lj6g0008238 Lotus japonicus HOM05D002532 ORTHO05D006707 1.1e-17 94.4 58 77.6
PSO017G2541 Papaver somniferum HOM05D002532 ORTHO05D006707 1.1e-17 94.4 57 78.9
PSO478G2362 Papaver somniferum HOM05D002532 ORTHO05D006707 1.1e-17 94.4 57 78.9
PSO675G7717 Papaver somniferum HOM05D002532 ORTHO05D006707 1.1e-17 94.4 57 78.9
Atru.chr3.117 Acer truncatum HOM05D002532 ORTHO05D006707 1.4e-17 94.0 59 76.3
DCAR_021233 Daucus carota HOM05D002532 ORTHO05D006707 1.4e-17 94.0 58 81.0
TWI09G0917 Tripterygium wilfordii HOM05D002532 ORTHO05D006707 1.4e-17 94.0 58 77.6
MBI06_g09272_MAGBIO Magnolia biondii HOM05D002532 ORTHO05D006707 1.8e-17 93.6 58 77.6
VMungo0720G0652 Vigna mungo HOM05D002532 ORTHO05D006707 1.8e-17 93.6 58 77.6
Dinv40197 Davidia involucrata HOM05D006556 ORTHO05D008146 2.3e-17 93.2 58 79.3
Gohir.A07G171700 Gossypium hirsutum HOM05D002532 ORTHO05D006707 2.3e-17 93.2 58 77.6
Phvul.007G251500 Phaseolus vulgaris HOM05D002532 ORTHO05D006707 3.1e-17 92.8 58 77.6
THA.LOC104807420 Tarenaya hassleriana HOM05D002532 ORTHO05D006707 3.1e-17 92.8 58 75.9
Thecc.01G004200 Theobroma cacao HOM05D002532 ORTHO05D006707 3.1e-17 92.8 58 79.3
GSVIVG01022295001 Vitis vinifera HOM05D002532 ORTHO05D006707 3.1e-17 92.8 58 77.6
ClCG02G024110 Citrullus lanatus HOM05D002532 ORTHO05D006707 4.0e-17 92.4 58 79.3
Hma1.2p1_0279F.1_g112550 Hydrangea macrophylla HOM05D002532 ORTHO05D006707 4.0e-17 92.4 58 77.6
MD07G1093800 Malus domestica HOM05D002532 ORTHO05D006707 4.0e-17 92.4 61 72.1
Nn3g16292 Nelumbo nucifera HOM05D002532 ORTHO05D006707 4.0e-17 92.4 58 77.6
Sed0005954 Sechium edule HOM05D002532 ORTHO05D006707 4.0e-17 92.4 58 77.6
MBI07_g07332_MAGBIO Magnolia biondii HOM05D002532 ORTHO05D006707 5.2e-17 92.0 58 75.9
SalBow6G4597 Salvia bowleyana HOM05D002532 ORTHO05D006707 5.2e-17 92.0 58 77.6
Cpa.g.sc48.84 Carica papaya HOM05D002532 ORTHO05D006707 6.8e-17 91.7 58 75.9
Cc05_g01520 Coffea canephora HOM05D002532 ORTHO05D006707 6.8e-17 91.7 58 74.1
MD02G1114300 Malus domestica HOM05D002532 ORTHO05D006707 6.8e-17 91.7 58 77.6
unitig_747.g21785 Utricularia gibba HOM05D002532 ORTHO05D006707 6.8e-17 91.7 58 75.9
CSS0017790 Camellia sinensis var. sinensis HOM05D002532 ORTHO05D006707 8.9e-17 91.3 58 75.9
CANSAT11G0232 Cannabis sativa HOM05D002532 ORTHO05D006707 1.5e-16 90.5 56 78.6
TAR362G0615 Trochodendron aralioides HOM05D002532 ORTHO05D006707 1.5e-16 90.5 58 75.9
CDE06G1122 Ceratophyllum demersum HOM05D002532 ORTHO05D006707 2.0e-16 90.1 57 75.4
Haze_03611 Corylus avellana HOM05D002532 ORTHO05D006707 2.0e-16 90.1 58 74.1
Haze_03616 Corylus avellana HOM05D002532 ORTHO05D006707 2.0e-16 90.1 58 74.1
Eucgr.J02540 Eucalyptus grandis HOM05D002532 ORTHO05D006707 2.0e-16 90.1 58 74.1
Glyma.18G010300 Glycine max HOM05D002532 ORTHO05D006707 2.0e-16 90.1 58 75.9
Oeu045731.1 Olea europaea HOM05D002532 ORTHO05D006707 2.6e-16 89.7 58 72.4
CAN.G1238.21 Capsicum annuum HOM05D002532 ORTHO05D006707 3.4e-16 89.4 58 75.9
CiPaw.13G096500 Carya illinoinensis HOM05D002532 ORTHO05D006707 3.4e-16 89.4 58 72.4
Prupe.8G126100 Prunus persica HOM05D002532 ORTHO05D006707 3.4e-16 89.4 58 74.1
Cc05_g16410 Coffea canephora HOM05D002532 ORTHO05D006707 4.4e-16 89.0 58 72.4
QL02p065096 Quercus lobata HOM05D002532 ORTHO05D006707 4.4e-16 89.0 58 74.1
QL06p053059 Quercus lobata HOM05D002532 ORTHO05D006707 4.4e-16 89.0 58 74.1
Aa31LG11G10180 Aethionema arabicum HOM05D002532 ORTHO05D006707 5.8e-16 88.6 72 61.1
ATR0751G011 Amborella trichopoda HOM05D006411 ORTHO05D006707 5.8e-16 88.6 58 70.7
Migut.L01816 Erythranthe guttata HOM05D002532 ORTHO05D006707 5.8e-16 88.6 58 75.9
ECA246G2624 Erigeron canadensis HOM05D002532 ORTHO05D006707 7.5e-16 88.2 58 70.7
Sc03g0004020 Simmondsia chinensis HOM05D002532 ORTHO05D006707 7.5e-16 88.2 58 70.7
Sc03g0004040 Simmondsia chinensis HOM05D002532 ORTHO05D006707 7.5e-16 88.2 58 70.7
Nitab4.5_0001467g0080 Nicotiana tabacum HOM05D002532 ORTHO05D006707 9.8e-16 87.8 58 74.1
Ca_20815_v3 Cicer arietinum L. HOM05D002532 ORTHO05D006707 1.3e-15 87.4 58 72.4
Medtr1g060610 Medicago truncatula HOM05D002532 ORTHO05D006707 1.3e-15 87.4 58 72.4
HPP92_013597 Vanilla planifolia HOM05D002532 ORTHO05D006707 1.3e-15 87.4 58 74.1
Glyma.11G247000 Glycine max HOM05D002532 ORTHO05D006707 1.7e-15 87.0 58 72.4
Cfa007088 Carpinus fangiana HOM05D002532 ORTHO05D006707 2.2e-15 86.7 58 70.7
HanXRQChr16g0531921 Helianthus annuus HOM05D002532 ORTHO05D006707 2.2e-15 86.7 58 69.0
Psat7g208000 Pisum sativum HOM05D002532 ORTHO05D006707 2.2e-15 86.7 58 72.4
AL7G15680 Arabidopsis lyrata HOM05D002532 ORTHO05D006707 3.7e-15 85.9 58 67.2
Carub.0007s0484 Capsella rubella HOM05D002532 ORTHO05D006707 3.7e-15 85.9 58 67.2
Thhalv10026461m.g Eutrema salsugineum HOM05D002532 ORTHO05D006707 3.7e-15 85.9 58 67.2
MD15G1229900 Malus domestica HOM05D002532 ORTHO05D006707 4.9e-15 85.5 56 73.2
Aa31LG6G12460 Aethionema arabicum HOM05D002532 ORTHO05D006707 6.4e-15 85.1 58 69.0
Aa31LG6G12500 Aethionema arabicum HOM05D002532 ORTHO05D006707 6.4e-15 85.1 58 69.0
AT4G35490 Arabidopsis thaliana HOM05D002532 ORTHO05D006707 1.1e-14 84.3 58 65.5
A03p63610 Brassica napus HOM05D002532 ORTHO05D006707 1.9e-14 83.6 58 65.5
C07p61180 Brassica napus HOM05D002532 ORTHO05D006707 1.9e-14 83.6 58 65.5
BolC7t46543H Brassica oleracea HOM05D002532 ORTHO05D006707 1.9e-14 83.6 58 65.5
BraA03t15432Z Brassica rapa HOM05D002532 ORTHO05D006707 1.9e-14 83.6 58 65.5
SHI29551 Sapria himalayana HOM05D002532 ORTHO05D006707 2.4e-14 83.2 58 69.0
Sp7g33270 Schrenkiella parvula HOM05D002532 ORTHO05D006707 2.4e-14 83.2 58 65.5
Nitab4.5_0007782g0040 Nicotiana tabacum HOM05D002532 ORTHO05D006707 3.2e-14 82.8 58 67.2
FvH4_4g16570 Fragaria vesca HOM05D002532 ORTHO05D006707 5.4e-14 82.0 52 76.9
FAN21G1191 Fragaria x ananassa HOM05D002532 ORTHO05D006707 5.4e-14 82.0 51 76.5
CARHR243820 Cardamine hirsuta HOM05D002532 ORTHO05D006707 7.1e-14 81.6 58 63.8
Cc05_g01560 Coffea canephora HOM05D002532 ORTHO05D006707 7.1e-14 81.6 57 66.7
Solyc02g082500.1 Solanum lycopersicum HOM05D002532 ORTHO05D006707 7.1e-14 81.6 58 69.0
Sopen02g027190 Solanum pennellii HOM05D002532 ORTHO05D006707 7.1e-14 81.6 58 69.0
PGSC0003DMG400001513 Solanum tuberosum HOM05D002532 ORTHO05D006707 7.1e-14 81.6 58 69.0
Peaxi162Scf00040g00314 Petunia axillaris HOM05D002532 ORTHO05D006707 9.2e-14 81.3 58 69.0
FAN08G0284 Fragaria x ananassa HOM05D002532 ORTHO05D006707 1.6e-13 80.5 49 81.6
SEGI_26865 Sequoiadendron giganteum HOM05D002532 ORTHO05D006707 1.6e-13 80.5 58 65.5
Os10g0466200 Oryza sativa ssp. japonica HOM05D002532 ORTHO05D006707 2.7e-13 79.7 58 63.8
Actinidia28748 Actinidia chinensis HOM05D002532 ORTHO05D006707 3.5e-13 79.3 60 70.0
AUR62002055 Chenopodium quinoa HOM05D002532 ORTHO05D006707 1.0e-12 77.8 58 58.6
AUR62003740 Chenopodium quinoa HOM05D002532 ORTHO05D006707 1.0e-12 77.8 58 58.6
BolC7t46542H Brassica oleracea HOM05D002532 ORTHO05D006707 1.3e-12 77.4 58 60.3
BraA03t15431Z Brassica rapa HOM05D002532 ORTHO05D006707 1.7e-12 77.0 58 60.3
Thecc.01G231200 Theobroma cacao HOM05D002532 ORTHO05D006707 1.7e-12 77.0 58 69.0
Aa31LG3G10000 Aethionema arabicum HOM05D002532 ORTHO05D006707 3.0e-12 76.3 58 58.6
Prupe.7G183900 Prunus persica HOM05D002532 ORTHO05D006707 3.9e-12 75.9 58 62.1
Zm00001eb222210 Zea mays HOM05D002532 ORTHO05D006707 8.6e-12 74.7 58 60.3
Lsat_1_v5_gn_8_112501 Lactuca sativa HOM05D002532 ORTHO05D006707 1.5e-11 73.9 58 56.9
Actinidia35686 Actinidia chinensis HOM05D002532 ORTHO05D006707 2.5e-11 73.2 47 74.5
EL10Ac6g15044 Beta vulgaris HOM05D002532 ORTHO05D006707 9.5e-11 71.2 58 51.7
Zm00001eb405750 Zea mays HOM05D002532 ORTHO05D006707 1.1e-09 67.8 58 51.7
Ah.04g164310 Amaranthus hybridus HOM05D002532 ORTHO05D006707 1.4e-09 67.4 58 48.3
SEGI_21355 Sequoiadendron giganteum HOM05D002532 ORTHO05D006707 2.3e-09 66.6 58 50.0
Hma1.2p1_0085F.1_g044580 Hydrangea macrophylla HOM05D002532 ORTHO05D006707 4.0e-09 65.9 47 72.3
Mapoly0057s0109 Marchantia polymorpha HOM05D002532 ORTHO05D006707 3.4e-08 62.8 58 46.6
Pp3c5_12940 Physcomitrium patens HOM05D002532 ORTHO05D006707 7.6e-08 61.6 57 50.9
AagrBONN_evm.TU.Sc2ySwM_228.5524 Anthoceros agrestis HOM05D002532 ORTHO05D006707 9.9e-08 61.2 58 51.7


User provided reference genes

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