Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 9.9e-258 892.9 435 100.0
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 2.4e-251 871.7 435 97.7
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 4.0e-251 870.9 435 97.5
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 8.4e-249 863.2 449 95.1
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 3.4e-234 814.7 435 92.0
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 4.1e-219 764.6 438 85.6
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 5.2e-214 747.7 440 83.6
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 5.7e-213 744.2 441 83.0
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 1.4e-198 696.4 488 73.8
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 1.6e-194 682.9 435 77.9
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 1.2e-191 673.3 415 77.1
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 2.3e-190 669.1 435 75.6
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 3.0e-190 668.7 430 77.0
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 6.8e-190 667.5 439 73.6
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 3.4e-189 665.2 441 75.3
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 5.7e-189 664.5 435 74.5
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 1.1e-187 660.2 425 74.6
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 1.8e-187 659.4 399 78.9
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 7.0e-187 657.5 427 75.6
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 9.2e-187 657.1 422 75.8
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 2.0e-186 656.0 424 75.7
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 3.5e-186 655.2 433 75.1
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 4.5e-186 654.8 404 79.5
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 1.7e-185 652.9 413 76.5
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 5.0e-185 651.4 427 76.3
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 5.0e-185 651.4 413 76.3
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 6.6e-185 651.0 399 78.2
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 1.1e-184 650.2 424 73.1
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.9e-184 649.4 413 75.5
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 7.3e-184 647.5 425 75.1
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 1.6e-183 646.4 431 73.8
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 1.6e-183 646.4 418 75.1
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 1.6e-183 646.4 426 74.6
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 2.1e-183 646.0 398 80.2
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 2.8e-183 645.6 406 77.1
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 3.6e-183 645.2 429 74.6
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 1.4e-182 643.3 389 79.7
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 3.1e-182 642.1 438 73.5
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 5.2e-182 641.3 431 73.5
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 6.8e-182 641.0 399 77.4
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 2.0e-181 639.4 428 72.4
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 3.4e-181 638.6 422 72.5
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 1.3e-180 636.7 396 77.5
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 2.9e-180 635.6 432 71.8
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 6.4e-180 634.4 438 71.0
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 7.0e-179 630.9 422 71.8
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 7.0e-179 630.9 420 74.8
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 7.0e-179 630.9 432 72.5
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 9.2e-179 630.6 408 73.3
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 9.2e-179 630.6 434 71.0
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 1.2e-178 630.2 396 77.5
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 6.0e-178 627.9 418 73.4
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 2.5e-176 622.5 421 70.5
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 2.5e-176 622.5 425 70.1
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 2.5e-176 622.5 425 70.1
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 7.3e-176 620.9 434 69.4
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 7.3e-176 620.9 409 72.6
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 1.2e-175 620.2 434 69.4
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 2.1e-175 619.4 420 71.2
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 2.1e-175 619.4 420 69.3
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 8.0e-175 617.5 445 71.5
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 1.1e-174 617.1 435 70.8
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 3.1e-174 615.5 410 71.7
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 8.9e-174 614.0 445 71.2
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 5.8e-173 611.3 438 68.3
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 1.7e-172 609.8 427 69.6
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 2.2e-172 609.4 421 69.4
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 2.9e-172 609.0 420 69.8
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 3.7e-172 608.6 431 70.8
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 1.9e-171 606.3 401 73.1
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 3.2e-171 605.5 418 70.1
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 3.2e-171 605.5 418 70.1
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 5.4e-171 604.7 390 76.7
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 3.3e-168 595.5 471 64.8
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 7.3e-168 594.3 427 68.4
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 1.6e-167 593.2 418 70.3
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 1.6e-167 593.2 448 65.8
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 2.8e-167 592.4 418 70.8
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 1.4e-166 590.1 424 67.7
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 4.0e-166 588.6 410 70.2
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 7.5e-165 584.3 411 68.9
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 1.3e-164 583.6 410 69.0
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 9.2e-163 577.4 424 66.5
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 9.2e-163 577.4 400 70.0
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 1.2e-162 577.0 388 69.8
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 3.5e-162 575.5 450 64.2
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 6.0e-162 574.7 387 72.1
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 3.0e-161 572.4 420 67.4
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 5.1e-161 571.6 380 72.1
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 1.5e-160 570.1 401 70.3
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 4.0e-158 562.0 338 78.4
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 1.2e-157 560.5 429 63.9
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 9.2e-155 550.8 382 69.9
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 4.6e-154 548.5 358 72.1
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 7.8e-154 547.7 421 65.3
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 4.0e-150 535.4 431 63.6
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 7.6e-149 531.2 377 69.0
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 2.9e-148 529.3 332 74.7
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 4.9e-148 528.5 423 59.6
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 9.3e-147 524.2 400 66.2
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 1.3e-143 513.8 339 74.0
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 1.4e-142 510.4 408 62.7
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 7.6e-141 504.6 388 63.9
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 1.3e-140 503.8 387 62.5
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 1.4e-139 500.4 386 62.2
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 2.4e-134 483.0 338 67.2
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 4.0e-134 482.3 387 61.5
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 5.3e-134 481.9 303 74.6
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.5e-133 480.3 338 66.6
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 7.6e-133 478.0 403 59.6
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 2.2e-132 476.5 302 75.8
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.4e-131 473.8 338 66.3
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 2.7e-130 469.5 426 56.8
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 1.3e-119 434.1 283 75.3
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 5.1e-113 412.1 269 73.2
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 2.0e-112 410.2 286 71.0
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 3.7e-103 379.4 335 54.6
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 2.0e-101 373.6 311 57.6
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 1.8e-94 350.5 396 46.2
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 3.5e-93 346.3 277 61.0
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 9.4e-91 338.2 222 70.7
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 1.2e-82 311.2 230 70.4
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 1.6e-77 294.3 233 62.7
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 1.2e-74 284.6 315 45.7
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 8.0e-74 282.0 204 67.2
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 3.5e-69 266.5 170 72.9
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 5.9e-69 265.8 242 52.9
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 2.9e-68 263.5 229 58.1
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 8.9e-57 225.3 145 73.1
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 1.1e-49 201.8 169 61.5
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.8e-42 177.2 123 64.2
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 1.3e-39 168.3 117 60.7
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 1.1e-35 155.2 150 55.3
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 2.1e-34 151.0 126 53.2
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 1.1e-33 148.7 154 53.9
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 3.8e-31 140.2 178 43.8
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 4.9e-31 139.8 122 59.0
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 6.0e-29 132.9 396 28.0
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 5.6e-27 126.3 295 31.5
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 3.4e-24 117.1 94 66.0
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 2.5e-19 100.9 63 69.8
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 1.7e-15 88.2 52 73.1
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 5.5e-14 83.2 58 65.5
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 5.1e-12 76.6 65 55.4
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 4.1e-09 67.0 89 42.7
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 4.1e-09 67.0 89 42.7


User provided reference genes

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