Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.0e-168 596.7 298 100.0
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.0e-168 596.7 298 100.0
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.5e-132 476.5 327 76.8
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.8e-117 426.4 302 74.8
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 1.5e-108 396.7 277 76.5
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.3e-86 323.9 274 63.9
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 1.7e-83 313.5 252 67.1
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 1.1e-69 267.7 269 53.2
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 8.5e-67 258.1 269 53.2
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 4.2e-66 255.8 276 52.9
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 7.9e-65 251.5 281 49.8
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 1.4e-64 250.8 279 50.2
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 2.3e-64 250.0 279 49.8
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 2.3e-64 250.0 267 52.4
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 2.0e-63 246.9 270 51.9
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 2.0e-63 246.9 270 51.9
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 4.4e-63 245.7 288 48.6
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 4.4e-63 245.7 274 49.6
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 5.7e-63 245.4 268 52.2
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 5.7e-63 245.4 273 50.9
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 8.2e-62 241.5 268 50.0
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 5.3e-61 238.8 292 49.0
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 7.0e-61 238.4 277 50.9
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 9.1e-61 238.0 267 50.2
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 9.1e-61 238.0 268 50.7
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 1.2e-60 237.7 251 52.2
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 1.6e-60 237.3 286 49.7
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 2.0e-60 236.9 289 47.4
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 3.5e-60 236.1 265 51.3
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 1.3e-59 234.2 278 47.1
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 1.3e-59 234.2 278 47.1
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 1.3e-59 234.2 268 49.3
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 2.2e-59 233.4 248 51.6
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 3.8e-59 232.6 278 46.4
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 6.5e-59 231.9 271 48.7
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 8.5e-59 231.5 275 46.5
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 4.2e-58 229.2 253 50.6
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 4.2e-58 229.2 286 46.2
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 5.5e-58 228.8 269 46.5
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 1.2e-57 227.6 305 46.2
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 2.1e-57 226.9 267 48.3
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 6.1e-57 225.3 256 49.6
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 6.1e-57 225.3 260 51.5
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 1.4e-56 224.2 268 50.4
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 1.5e-55 220.7 267 50.2
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 2.0e-55 220.3 254 47.2
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 2.0e-55 220.3 264 48.1
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 2.0e-55 220.3 264 50.4
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 3.3e-55 219.5 284 44.7
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 4.4e-55 219.2 261 44.4
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 1.7e-54 217.2 278 48.2
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 4.8e-54 215.7 267 47.9
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 6.3e-54 215.3 267 46.1
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 8.2e-54 214.9 267 48.7
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 3.1e-53 213.0 267 45.3
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 9.1e-53 211.5 287 43.9
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 9.1e-53 211.5 291 45.4
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 1.2e-52 211.1 292 44.5
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 1.6e-52 210.7 268 45.5
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 2.0e-52 210.3 267 50.2
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 4.5e-52 209.1 282 44.0
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 5.9e-52 208.8 269 44.6
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 7.7e-52 208.4 281 45.6
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 2.2e-51 206.8 259 44.4
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 2.2e-51 206.8 267 43.8
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 2.2e-51 206.8 258 45.3
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 2.9e-51 206.5 267 45.3
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 5.0e-51 205.7 200 58.5
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 1.1e-50 204.5 268 44.8
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 3.2e-50 203.0 291 42.3
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 4.2e-50 202.6 268 45.1
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 5.5e-50 202.2 253 46.2
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 5.5e-50 202.2 255 48.2
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 2.1e-49 200.3 269 42.8
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 1.4e-48 197.6 280 43.6
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 2.3e-48 196.8 261 44.4
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 2.3e-48 196.8 263 44.1
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 1.2e-47 194.5 268 44.0
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 1.3e-46 191.0 255 45.1
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 1.3e-46 191.0 284 40.8
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 7.0e-45 185.3 278 43.2
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 4.7e-41 172.6 260 38.1
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 4.7e-41 172.6 275 40.0
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 1.0e-40 171.4 233 46.4
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 2.3e-40 170.2 412 32.3
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 6.8e-40 168.7 218 44.5
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 4.4e-39 166.0 245 43.3
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 5.7e-39 165.6 220 45.0
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 5.7e-39 165.6 286 39.2
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 7.5e-39 165.2 283 37.1
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 9.8e-39 164.9 269 40.5
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 4.1e-37 159.5 277 40.1
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 3.8e-35 152.9 139 54.7
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 1.1e-34 151.4 224 43.8
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 4.3e-34 149.4 138 58.0
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 3.4e-31 139.8 283 34.3
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 9.2e-29 131.7 163 50.3
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 1.6e-28 131.0 168 47.6
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 3.5e-28 129.8 82 74.4
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 1.7e-27 127.5 174 43.7
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 6.6e-27 125.6 117 52.1
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 8.6e-27 125.2 222 35.6
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 5.6e-26 122.5 120 53.3
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 2.0e-23 114.0 165 40.6
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 2.0e-23 114.0 165 40.6
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 2.6e-23 113.6 164 40.9
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 4.4e-23 112.8 165 40.6
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 2.9e-22 110.2 158 42.4
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 3.7e-22 109.8 82 61.0
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 1.9e-21 107.5 151 41.1
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.7e-19 100.9 174 37.9
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 3.0e-19 100.1 148 39.9
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 1.9e-18 97.4 144 40.3
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 1.2e-17 94.7 88 56.8
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 1.8e-16 90.9 127 43.3
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 3.4e-15 86.7 65 52.3
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 2.9e-14 83.6 95 46.3
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 6.4e-14 82.4 126 42.9
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 3.2e-13 80.1 269 26.8
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 4.1e-13 79.7 90 47.8
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 1.6e-12 77.8 115 40.9
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 7.8e-12 75.5 126 40.5
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 7.8e-12 75.5 72 51.4
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 6.6e-11 72.4 98 39.8
SHI14999 Sapria himalayana HOM05D005377 ORTHO05D003034 8.6e-11 72.0 61 52.5
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 1.1e-10 71.6 39 71.8
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 3.6e-09 66.6 100 40.0
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 8.1e-09 65.5 301 26.9
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 2.0e-07 60.8 35 77.1
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 9.9e-07 58.5 137 31.4
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 6.4e-06 55.8 36 72.2


User provided reference genes

Program Settings