Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G1206 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 2139.4 1104 100.0
FAN15G2563 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 2047.7 1104 95.9
FvH4_2g02670 Fragaria vesca HOM05D005711 ORTHO05D007125 0.0e+00 2033.5 1104 95.5
FAN24G0778 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 2033.5 1104 95.4
RcHm_v2.0_Chr7g0177161 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1889.4 1104 88.6
RcHm_v2.0_Chr6g0247071 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1879.0 1104 88.2
FAN27G3244 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1657.1 881 96.1
Prupe.8G156400 Prunus persica HOM05D005711 ORTHO05D007125 0.0e+00 1569.3 1104 72.8
MD05G1111300 Malus domestica HOM05D005711 ORTHO05D007125 0.0e+00 1556.6 1108 72.6
CiPaw.09G035700 Carya illinoinensis HOM05D005711 ORTHO05D007125 0.0e+00 1302.0 1090 62.0
QL07p021385 Quercus lobata HOM05D005711 ORTHO05D007125 0.0e+00 1286.9 1121 61.0
Cfa016851 Carpinus fangiana HOM05D005711 ORTHO05D007125 0.0e+00 1265.8 1050 62.5
CANSAT80G2574 Cannabis sativa HOM05D005711 ORTHO05D007125 0.0e+00 1260.0 1091 60.0
Thecc.05G160700 Theobroma cacao HOM05D005711 ORTHO05D007125 0.0e+00 1257.3 1105 59.9
TAR633G2044 Trochodendron aralioides HOM05D005711 ORTHO05D007125 0.0e+00 1230.7 1119 59.6
GSVIVG01033319001 Vitis vinifera HOM05D005711 ORTHO05D007125 0.0e+00 1227.6 1106 58.8
Dinv24132 Davidia involucrata HOM05D005711 ORTHO05D007125 0.0e+00 1201.4 1102 58.3
Haze_19901 Corylus avellana HOM05D005711 ORTHO05D007125 0.0e+00 1191.4 1077 59.1
Potri.006G054100 Populus trichocarpa HOM05D005711 ORTHO05D007125 0.0e+00 1189.5 1101 56.9
TWI53G1199 Tripterygium wilfordii HOM05D005711 ORTHO05D007125 0.0e+00 1184.9 1090 57.4
Manes.09G026800 Manihot esculenta HOM05D005711 ORTHO05D007125 0.0e+00 1179.1 1097 57.0
Ciclev10004212m.g Citrus clementina HOM05D005711 ORTHO05D007125 0.0e+00 1175.6 1099 56.8
Actinidia09354 Actinidia chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1171.0 1105 56.2
Glyma.19G141900 Glycine max HOM05D005711 ORTHO05D007125 0.0e+00 1159.4 1103 56.0
Gorai.002G230200 Gossypium raimondii HOM05D005711 ORTHO05D007125 0.0e+00 1157.9 1102 56.4
Lj1g0025810 Lotus japonicus HOM05D005711 ORTHO05D007125 0.0e+00 1156.7 1097 55.6
Gohir.A01G196500 Gossypium hirsutum HOM05D005711 ORTHO05D007125 0.0e+00 1155.6 1102 56.4
CSS0036262 Camellia sinensis var. sinensis HOM05D005711 ORTHO05D007125 0.0e+00 1146.7 1113 56.2
Medtr7g092130 Medicago truncatula HOM05D005711 ORTHO05D007125 0.0e+00 1146.0 1095 54.6
Ca_08477_v3 Cicer arietinum L. HOM05D005711 ORTHO05D007125 0.0e+00 1139.0 1096 54.8
Phvul.001G135900 Phaseolus vulgaris HOM05D005711 ORTHO05D007125 0.0e+00 1125.5 1107 55.0
VMungo1383G1829 Vigna mungo HOM05D005711 ORTHO05D007125 0.0e+00 1125.5 1104 54.8
Lalb_Chr20g0110821 Lupinus albus HOM05D005711 ORTHO05D007125 0.0e+00 1114.0 1091 54.6
Psat3g071760 Pisum sativum HOM05D005711 ORTHO05D007125 0.0e+00 1112.8 1097 53.3
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 0.0e+00 1102.0 1100 54.2
CsaV3_4G031330 Cucumis sativus L. HOM05D005711 ORTHO05D007125 0.0e+00 1098.2 1103 53.4
Sed0005844 Sechium edule HOM05D005711 ORTHO05D007125 0.0e+00 1093.2 1104 53.9
Duzib093G0922 Durio zibethinus HOM05D005711 ORTHO05D007125 0.0e+00 1084.7 1100 54.9
arahy.Tifrunner.gnm1.ann1.FZG2LY Arachis hypogaea HOM05D005711 ORTHO05D007125 0.0e+00 1082.8 1103 53.3
TPR.G3825 Trifolium pratense HOM05D005711 ORTHO05D007125 0.0e+00 1081.2 1037 54.3
arahy.Tifrunner.gnm1.ann1.7A57YA Arachis hypogaea HOM05D005711 ORTHO05D007125 0.0e+00 1080.5 1104 53.0
FvH4_7g07942 Fragaria vesca HOM05D005711 ORTHO05D007125 2.0e-307 1059.3 619 88.7
MELO3C009042.2 Cucumis melo HOM05D005711 ORTHO05D007125 2.3e-303 1045.8 1154 51.8
PGR004G1983 Punica granatum HOM05D005711 ORTHO05D007125 1.5e-302 1043.1 1023 54.9
AT3G57570 Arabidopsis thaliana HOM05D005711 ORTHO05D007125 2.0e-302 1042.7 1092 51.2
AL5G39150 Arabidopsis lyrata HOM05D005711 ORTHO05D007125 3.7e-301 1038.5 1101 51.2
HanXRQChr13g0390691 Helianthus annuus HOM05D005711 ORTHO05D007125 6.3e-301 1037.7 1098 50.9
THA.LOC104802271 Tarenaya hassleriana HOM05D005711 ORTHO05D007125 6.3e-301 1037.7 1124 50.6
Migut.J01777 Erythranthe guttata HOM05D005711 ORTHO05D007125 1.1e-300 1036.9 1121 49.9
MSTRG.6443 Avicennia marina HOM05D005711 ORTHO05D007125 4.1e-300 1035.0 1125 48.8
Carub.0005s2441 Capsella rubella HOM05D005711 ORTHO05D007125 7.2e-297 1024.2 1092 50.7
Aqoxy7G01800 Aquilegia oxysepala HOM05D005711 ORTHO05D007125 2.1e-296 1022.7 1128 50.1
A09p50460 Brassica napus HOM05D005711 ORTHO05D007125 1.4e-295 1020.0 1096 50.7
BraA09t40497Z Brassica rapa HOM05D005711 ORTHO05D007125 6.8e-295 1017.7 1102 50.6
Oeu018003.1 Olea europaea HOM05D005711 ORTHO05D007125 2.0e-294 1016.1 1106 49.4
Cc06_g17000 Coffea canephora HOM05D005711 ORTHO05D007125 5.7e-294 1014.6 1099 50.6
C08p33160 Brassica napus HOM05D005711 ORTHO05D007125 7.3e-289 997.7 1123 49.2
BolC8t50918H Brassica oleracea HOM05D005711 ORTHO05D007125 4.7e-288 995.0 1121 49.2
PSO782G5466 Papaver somniferum HOM05D005711 ORTHO05D007125 5.2e-287 991.5 1110 50.4
Gohir.D01G186800 Gossypium hirsutum HOM05D005711 ORTHO05D007125 1.1e-284 983.8 918 56.4
SGA_v2.0_scaffold69G23097 Striga asiatica HOM05D005711 ORTHO05D007125 1.3e-282 976.9 1122 47.7
ECA248G2859 Erigeron canadensis HOM05D005711 ORTHO05D007125 5.0e-282 974.9 1096 48.4
Lj2C380T2 Lonicera japonica HOM05D005711 ORTHO05D007125 1.3e-277 960.3 950 56.1
COL.COLO4_28164 Corchorus olitorius HOM05D005711 ORTHO05D007125 2.2e-277 959.5 964 54.9
Sc25g0005260 Simmondsia chinensis HOM05D005711 ORTHO05D007125 2.4e-276 956.1 1075 49.5
Aa31LG10G12390 Aethionema arabicum HOM05D005711 ORTHO05D007125 2.3e-274 949.5 1094 48.4
Rhsim03G0016500 Rhododendron simsii HOM05D005711 ORTHO05D007125 2.1e-272 943.0 954 55.7
EL10Ac3g07027 Beta vulgaris HOM05D005711 ORTHO05D007125 4.3e-265 918.7 1108 47.1
AUR62026001 Chenopodium quinoa HOM05D005711 ORTHO05D007125 4.3e-265 918.7 1106 47.6
Cpa.g.sc92.19 Carica papaya HOM05D005711 ORTHO05D007125 1.6e-264 916.8 822 58.4
DCAR_009055 Daucus carota HOM05D005711 ORTHO05D007125 1.2e-259 900.6 1115 46.5
Ah.13g076290 Amaranthus hybridus HOM05D005711 ORTHO05D007125 7.3e-257 891.3 1157 44.7
Sp5g05020 Schrenkiella parvula HOM05D005711 ORTHO05D007125 1.2e-254 884.0 972 50.4
CDE10G0401 Ceratophyllum demersum HOM05D005711 ORTHO05D007125 9.9e-254 880.9 1118 45.0
Lsat_1_v5_gn_5_162580 Lactuca sativa HOM05D005711 ORTHO05D007125 1.9e-252 876.7 1095 45.0
Atru.chr1.1044 Acer truncatum HOM05D005711 ORTHO05D007125 4.0e-247 859.0 763 58.1
ATR0605G192 Amborella trichopoda HOM05D005711 ORTHO05D007125 2.9e-245 852.8 1129 43.0
Thhalv10005777m.g Eutrema salsugineum HOM05D005711 ORTHO05D007125 4.6e-243 845.5 897 50.6
BcaC07g40362 Brassica carinata HOM05D005711 ORTHO05D007125 7.9e-227 791.6 961 46.1
Peaxi162Scf00650g00112 Petunia axillaris HOM05D005711 ORTHO05D007125 2.3e-226 790.0 1106 41.8
SalBow6G5243 Salvia bowleyana HOM05D005711 ORTHO05D007125 1.5e-225 787.3 1092 41.7
Eucgr.A02387 Eucalyptus grandis HOM05D005711 ORTHO05D007125 6.7e-202 708.8 733 53.8
CARHR167800 Cardamine hirsuta HOM05D005711 ORTHO05D007125 5.9e-198 695.7 769 48.9
vmacro22370 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 3.6e-195 686.4 795 49.9
FAN01G1916 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.6e-179 634.4 385 85.5
AUR62024408 Chenopodium quinoa HOM05D005711 ORTHO05D007125 3.6e-171 606.7 751 47.0
Rhsim03G0017400 Rhododendron simsii HOM05D005711 ORTHO05D007125 3.6e-171 606.7 930 42.5
Nitab4.5_0002510g0050 Nicotiana tabacum HOM05D005711 ORTHO05D007125 8.3e-168 595.5 1109 35.1
Pp3c13_4080 Physcomitrium patens HOM05D005711 ORTHO05D007125 3.9e-149 533.5 1143 32.0
ClCG04G000850 Citrullus lanatus HOM05D005711 ORTHO05D007125 2.9e-144 517.3 704 43.5
Mapoly0169s0013 Marchantia polymorpha HOM05D005711 ORTHO05D007125 9.3e-143 512.3 1348 28.3
Rhsim03G0016100 Rhododendron simsii HOM05D005711 ORTHO05D007125 6.0e-126 456.4 465 54.6
ClCG04G000840 Citrullus lanatus HOM05D005711 ORTHO05D007125 2.8e-123 447.6 470 54.0
vmacro07877 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 8.5e-104 382.9 339 60.5
Rhsim05G0135200 Rhododendron simsii HOM05D005711 ORTHO05D007125 2.5e-100 371.3 1229 28.5
Thecc.05G160900 Theobroma cacao HOM05D005711 ORTHO05D007125 5.9e-97 360.1 339 58.4
CARHR167810 Cardamine hirsuta HOM05D005711 ORTHO05D007125 2.1e-94 351.7 331 57.7
vmacro07878 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 6.7e-93 346.7 339 54.6
Rhsim03G0014800 Rhododendron simsii HOM05D005711 ORTHO05D007125 2.4e-90 338.2 593 38.8
Nitab4.5_0005201g0010 Nicotiana tabacum HOM05D005711 ORTHO05D007125 1.0e-80 306.2 297 54.5
Solyc03g063700.1 Solanum lycopersicum HOM05D005711 ORTHO05D007125 6.1e-78 297.0 298 52.0
PGSC0003DMG402011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 4.8e-75 287.3 291 52.2
Dinv01671 Davidia involucrata HOM05D005711 ORTHO05D007125 1.8e-66 258.8 281 49.5
Sabra06G0038400 Salix brachista HOM05D005711 ORTHO05D007125 7.7e-65 253.4 229 59.8
FvH4_7g07941 Fragaria vesca HOM05D005711 ORTHO05D007125 2.4e-58 231.9 127 93.7
AUR62024409 Chenopodium quinoa HOM05D005711 ORTHO05D007125 1.0e-56 226.5 361 38.2
SEGI_36353 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 1.2e-52 213.0 261 48.7
FvH4_7g07943 Fragaria vesca HOM05D005711 ORTHO05D007125 2.3e-48 198.7 130 83.8
FAN06G4049 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.1e-47 196.4 130 83.1
FAN10G0844 Fragaria x ananassa HOM05D005711 ORTHO05D007125 2.5e-47 195.3 130 83.1
Cpa.g.sc92.20 Carica papaya HOM05D005711 ORTHO05D010193 4.3e-47 194.5 184 51.6
Rhsim03G0097300 Rhododendron simsii HOM05D005711 ORTHO05D007125 9.5e-47 193.4 389 35.7
PGSC0003DMG401011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 6.4e-43 180.6 204 48.0
SEGI_00323 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 1.9e-42 179.1 300 39.7
COL.COLO4_28165 Corchorus olitorius HOM05D005711 ORTHO05D007125 7.8e-41 173.7 148 56.1
Lj2A380T68 Lonicera japonica HOM05D005711 ORTHO05D007125 1.3e-40 172.9 198 44.9
BcaC07g40361 Brassica carinata HOM05D005711 ORTHO05D007125 3.3e-39 168.3 138 61.6
SMO356G0176 Selaginella moellendorffii HOM05D005711 ORTHO05D007125 7.3e-39 167.2 316 36.7
Hma1.2p1_0247F.1_g101860 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 9.5e-39 166.8 158 50.0
Nitab4.5_0010669g0020 Nicotiana tabacum HOM05D005711 ORTHO05D007125 2.4e-34 152.1 494 29.1
CBR_g41427 Chara braunii HOM05D005711 ORTHO05D007125 7.1e-34 150.6 488 26.4
FAN26G1840 Fragaria x ananassa HOM05D005711 ORTHO05D007125 2.4e-29 135.6 131 57.3
SalBow4G0785 Salvia bowleyana HOM05D005711 ORTHO05D007125 1.3e-19 103.2 153 39.9
Nitab4.5_0010669g0030 Nicotiana tabacum HOM05D005711 ORTHO05D007125 4.6e-17 94.7 161 39.1
FAN04G1389 Fragaria x ananassa HOM05D005711 ORTHO05D007125 5.1e-16 91.3 50 92.0
CBR_g41430 Chara braunii HOM05D000019 ORTHO05D000048 7.4e-15 87.4 232 27.6
Rhsim03G0016400 Rhododendron simsii HOM05D005711 ORTHO05D007125 7.4e-15 87.4 83 59.0
SEGI_21308 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 7.6e-12 77.4 85 44.7
arahy.Tifrunner.gnm1.ann1.N4MAIX Arachis hypogaea HOM05D005711 ORTHO05D007125 4.2e-10 71.6 62 54.8
MCO09G818 Micromonas commoda HOM05D005711 ORTHO05D007125 9.3e-10 70.5 403 20.8
BolC4t25036H Brassica oleracea HOM05D005711 ORTHO05D040726 2.1e-09 69.3 112 41.1
Hma1.2p1_0247F.1_g101870 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 2.3e-08 65.9 94 39.4
Thecc.05G161000 Theobroma cacao HOM05D005711 ORTHO05D007125 5.6e-07 61.2 43 67.4


User provided reference genes

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