Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 3.5e-103 380.2 288 100.0
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 3.6e-84 317.0 157 98.7
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.8e-83 314.7 157 97.5
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 6.9e-83 312.8 157 97.5
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 3.6e-76 290.4 157 89.2
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 1.3e-65 255.4 156 75.6
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 2.1e-63 248.1 156 75.0
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 3.1e-51 207.6 275 70.2
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 6.1e-47 193.4 156 55.1
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 9.7e-45 186.0 155 56.8
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 2.2e-44 184.9 151 57.0
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 2.8e-44 184.5 154 53.9
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 3.7e-44 184.1 156 55.8
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 8.2e-44 183.0 151 57.6
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 8.2e-44 183.0 152 53.9
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 1.4e-43 182.2 150 57.3
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 2.4e-43 181.4 150 55.3
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 2.4e-43 181.4 155 55.5
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 2.4e-43 181.4 154 53.9
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 5.3e-43 180.3 154 55.8
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 5.3e-43 180.3 152 53.3
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 5.3e-43 180.3 148 57.4
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 6.9e-43 179.9 155 54.8
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 1.2e-42 179.1 154 55.2
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 1.2e-42 179.1 155 54.8
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 1.2e-42 179.1 156 55.1
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 3.4e-42 177.6 157 53.5
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 4.5e-42 177.2 150 53.3
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 4.5e-42 177.2 153 52.3
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 1.0e-41 176.0 155 52.9
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 3.8e-41 174.1 153 54.9
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 3.8e-41 174.1 153 55.6
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 8.5e-41 172.9 149 56.4
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 1.9e-40 171.8 155 52.3
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 1.9e-40 171.8 155 52.3
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 9.4e-40 169.5 155 54.2
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 2.7e-39 167.9 155 51.6
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 1.8e-38 165.2 155 49.0
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 6.7e-38 163.3 155 49.0
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 1.1e-37 162.5 154 48.7
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 7.4e-37 159.8 150 52.7
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 1.3e-36 159.1 148 53.4
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 3.7e-36 157.5 156 48.7
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 6.3e-36 156.8 150 49.3
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 1.4e-35 155.6 150 52.0
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 2.4e-35 154.8 148 50.0
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 2.4e-35 154.8 156 48.1
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 2.0e-34 151.8 154 48.7
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 4.5e-34 150.6 149 49.7
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 7.7e-34 149.8 154 46.1
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 1.7e-33 148.7 151 51.7
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 2.9e-33 147.9 147 49.0
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 2.9e-33 147.9 149 49.0
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 5.0e-33 147.1 152 50.7
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 5.0e-33 147.1 152 50.7
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 5.0e-33 147.1 149 48.3
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 1.4e-32 145.6 154 48.1
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 1.9e-32 145.2 154 49.4
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 1.9e-32 145.2 155 45.2
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 2.5e-32 144.8 145 46.9
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 4.2e-32 144.1 154 48.7
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 4.2e-32 144.1 147 46.9
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 9.4e-32 142.9 150 50.7
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 1.2e-31 142.5 155 44.5
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 1.2e-31 142.5 147 46.9
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 1.6e-31 142.1 154 49.4
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 1.6e-31 142.1 149 45.0
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 2.1e-31 141.7 142 48.6
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 2.7e-31 141.4 152 48.7
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 2.7e-31 141.4 149 50.3
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 6.1e-31 140.2 155 45.8
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 6.1e-31 140.2 155 45.8
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 7.9e-31 139.8 147 46.3
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 1.0e-30 139.4 151 49.0
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 1.0e-30 139.4 150 42.7
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 2.3e-30 138.3 152 45.4
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 3.0e-30 137.9 154 46.1
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 1.5e-29 135.6 152 46.1
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 2.0e-29 135.2 156 47.4
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 7.4e-29 133.3 151 47.0
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 7.4e-29 133.3 154 46.1
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 8.2e-28 129.8 154 44.2
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 1.1e-27 129.4 152 42.1
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 1.2e-26 125.9 158 46.2
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 3.5e-26 124.4 155 39.4
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 1.0e-25 122.9 155 38.1
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.2e-25 121.7 114 51.8
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 5.0e-25 120.6 151 43.7
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 6.5e-25 120.2 129 48.8
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 6.5e-25 120.2 156 43.6
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 8.5e-25 119.8 148 43.2
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 4.2e-24 117.5 155 41.3
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 1.2e-23 115.9 138 42.8
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 3.6e-23 114.4 156 35.9
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 6.1e-23 113.6 156 41.0
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 6.1e-23 113.6 134 45.5
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 1.0e-22 112.8 152 37.5
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 2.3e-22 111.7 145 40.7
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 4.0e-22 110.9 154 39.0
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.3e-20 105.9 100 51.0
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 2.8e-20 104.8 153 39.2
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 3.7e-20 104.4 152 38.2
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 3.7e-20 104.4 152 38.2
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 6.3e-20 103.6 142 37.3
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 8.2e-20 103.2 94 53.2
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 1.8e-19 102.1 140 40.0
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 7.0e-19 100.1 113 44.2
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 6.1e-15 87.0 157 33.1
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.4e-11 75.1 59 57.6
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 3.1e-11 74.7 142 32.4
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.7e-09 68.9 36 80.6
Cc02_g09190 Coffea canephora HOM05D000001 ORTHO05D010426 6.1e-07 60.5 144 25.0


User provided reference genes

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