Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.2e-244 849.4 418 100.0
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 4.0e-232 807.7 421 95.2
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 2.3e-227 792.0 421 93.8
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 1.5e-215 752.7 423 89.6
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 2.3e-179 632.5 409 78.5
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 5.5e-173 611.3 406 76.4
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 4.4e-162 575.1 417 69.8
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 4.9e-161 571.6 398 71.4
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 2.4e-160 569.3 418 68.9
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 9.2e-160 567.4 356 77.5
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 2.0e-159 566.2 405 70.9
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 2.0e-159 566.2 367 75.5
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 7.8e-159 564.3 367 74.9
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 2.3e-158 562.8 356 77.0
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 3.0e-158 562.4 410 69.8
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 3.9e-158 562.0 417 68.6
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 3.3e-157 558.9 377 71.4
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 5.6e-157 558.1 371 74.7
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 5.6e-157 558.1 409 68.9
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 7.3e-157 557.8 365 74.2
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 8.0e-156 554.3 406 68.0
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 8.0e-156 554.3 406 68.0
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 1.0e-155 553.9 402 70.6
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 3.1e-155 552.4 410 66.6
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 5.2e-155 551.6 358 76.0
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 8.9e-155 550.8 315 89.2
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 1.5e-154 550.1 406 66.5
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 2.6e-154 549.3 350 76.3
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 2.6e-154 549.3 384 70.3
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.4e-154 548.9 354 73.7
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 5.8e-154 548.1 348 75.9
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 5.8e-154 548.1 355 73.5
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 9.8e-154 547.4 410 66.8
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 2.2e-153 546.2 400 68.5
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 6.4e-153 544.7 350 74.6
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 8.3e-153 544.3 406 66.7
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.9e-152 543.1 352 74.4
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 2.4e-152 542.7 351 74.4
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 3.2e-152 542.3 396 68.2
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.2e-152 542.3 352 74.1
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 3.2e-152 542.3 350 74.0
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 1.2e-151 540.4 354 73.2
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.6e-151 540.0 353 73.4
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 3.5e-151 538.9 353 73.7
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 4.6e-151 538.5 419 66.3
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 4.6e-151 538.5 350 73.4
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 1.7e-150 536.6 416 66.3
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 3.9e-150 535.4 367 72.8
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 3.9e-150 535.4 357 73.9
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 1.1e-149 533.9 406 68.2
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 1.5e-149 533.5 407 66.8
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 1.9e-149 533.1 382 68.1
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 2.5e-149 532.7 362 72.1
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 1.2e-148 530.4 366 70.8
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 2.1e-148 529.6 374 70.1
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 2.8e-148 529.3 360 72.5
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 2.8e-148 529.3 347 73.8
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 1.8e-147 526.6 366 69.7
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.0e-147 525.4 355 72.4
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 3.4e-146 522.3 360 72.2
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 4.4e-146 521.9 353 72.2
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 7.5e-146 521.2 391 66.8
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.3e-145 520.4 360 71.4
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.3e-145 520.4 378 68.0
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 8.3e-145 517.7 327 73.7
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 1.1e-144 517.3 356 71.1
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.1e-144 517.3 406 64.8
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 2.4e-144 516.2 352 72.7
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 3.2e-144 515.8 414 63.8
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 3.2e-144 515.8 420 63.8
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 4.1e-144 515.4 418 62.7
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 2.1e-143 513.1 474 56.8
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 4.6e-143 511.9 361 67.6
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.3e-142 510.4 424 62.7
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 1.7e-142 510.0 356 70.8
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 8.6e-142 507.7 349 69.1
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 1.1e-141 507.3 357 68.1
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.1e-141 507.3 334 73.7
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 1.5e-141 506.9 357 68.1
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 1.5e-141 506.9 354 69.8
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 3.3e-141 505.8 364 67.6
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 7.3e-141 504.6 357 68.1
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 9.5e-141 504.2 406 64.0
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 1.2e-140 503.8 350 68.6
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 2.1e-140 503.1 348 71.8
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 2.8e-140 502.7 308 78.6
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 1.1e-139 500.7 353 68.3
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 2.3e-139 499.6 357 67.5
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 3.1e-139 499.2 326 73.9
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.0e-139 498.8 304 77.0
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 6.8e-139 498.0 357 67.8
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 4.4e-138 495.4 356 68.3
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 2.2e-137 493.0 304 76.0
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 1.4e-136 490.3 346 68.5
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 4.1e-136 488.8 357 65.5
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 9.2e-136 487.6 421 59.6
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 1.6e-135 486.9 351 65.2
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 7.8e-135 484.6 281 82.9
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 7.8e-135 484.6 353 65.4
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 5.1e-134 481.9 358 64.0
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 3.3e-133 479.2 313 73.8
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 2.1e-132 476.5 350 64.6
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 8.1e-132 474.6 334 69.8
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.4e-131 473.8 358 65.1
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 2.4e-131 473.0 317 73.2
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 5.2e-131 471.9 304 73.7
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 1.2e-130 470.7 332 67.8
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 2.0e-130 469.9 304 73.0
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 2.4e-128 463.0 324 69.4
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 2.1e-127 459.9 324 69.1
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 8.7e-126 454.5 262 81.7
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 7.3e-125 451.4 336 67.6
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 3.1e-123 446.0 356 62.6
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 2.4e-120 436.4 330 65.2
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 1.1e-117 427.6 324 65.4
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 7.4e-117 424.9 374 58.6
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 7.1e-112 408.3 479 46.8
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 3.9e-110 402.5 246 76.0
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 6.7e-110 401.7 251 72.9
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 5.6e-109 398.7 379 52.0
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 9.6e-109 397.9 275 69.8
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 5.3e-107 392.1 256 71.5
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 1.2e-103 380.9 387 50.6
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 3.5e-103 379.4 222 82.4
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 1.8e-102 377.1 325 60.9
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 1.1e-101 374.4 241 73.9
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.3e-101 372.9 381 52.2
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 3.1e-99 366.3 405 49.4
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 3.2e-96 356.3 360 51.7
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 7.2e-96 355.1 287 62.7
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 2.7e-95 353.2 273 68.5
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 8.7e-94 348.2 380 52.6
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 2.2e-92 343.6 363 49.6
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 3.7e-92 342.8 210 74.8
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 2.4e-91 340.1 361 54.8
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 4.5e-90 335.9 298 55.4
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 2.5e-88 330.1 264 63.6
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.6e-82 310.1 303 55.4
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 5.9e-82 308.9 288 56.9
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.1e-79 300.4 218 69.7
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 4.7e-79 299.3 192 69.8
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 8.8e-78 295.0 195 74.9
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 4.4e-77 292.7 254 57.9
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 2.2e-76 290.4 281 49.8
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 6.1e-71 272.3 195 70.8
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 6.1e-71 272.3 331 48.9
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.0e-65 255.0 195 64.1
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 8.5e-65 251.9 134 88.8
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 1.6e-50 204.5 170 61.8
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 1.0e-49 201.8 329 41.3
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 3.8e-49 199.9 126 74.6
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 4.3e-48 196.4 325 35.4
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 5.2e-46 189.5 335 39.1
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 3.7e-44 183.3 234 47.0
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 7.8e-42 175.6 117 75.2
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 8.6e-41 172.2 223 40.4
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 2.8e-39 167.2 299 33.4
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 2.9e-36 157.1 156 50.0
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 7.0e-35 152.5 89 75.3
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 3.7e-28 130.2 207 36.7
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 1.4e-19 101.7 130 48.5
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 1.1e-16 92.0 74 56.8
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 1.8e-14 84.7 68 63.2
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 3.1e-14 84.0 80 52.5
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 5.2e-14 83.2 49 77.6
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 6.9e-14 82.8 80 52.5
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.0e-13 81.3 67 55.2
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 6.0e-10 69.7 72 55.6
MD15G1096200 Malus domestica HOM05D004081 ORTHO05D025646 2.3e-09 67.8 46 69.6
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 2.8e-07 60.8 41 73.2
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.8e-06 58.2 44 63.6
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 6.9e-06 56.2 44 61.4


User provided reference genes

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