Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.8e-47 192.2 93 100.0
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.1e-44 183.0 93 95.7
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.1e-44 183.0 93 95.7
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 3.2e-44 181.4 93 94.6
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 4.1e-44 181.0 93 94.6
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 4.1e-44 181.0 93 94.6
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 9.2e-44 179.9 93 93.5
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.0e-43 178.7 93 92.5
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.3e-42 176.0 93 91.4
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 3.9e-42 174.5 93 91.4
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 3.9e-42 174.5 93 91.4
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 1.5e-38 162.5 93 81.7
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 1.5e-38 162.5 93 81.7
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 3.4e-38 161.4 93 79.6
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 5.8e-38 160.6 93 80.6
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 7.5e-38 160.2 93 79.6
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 7.5e-38 160.2 93 79.6
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 9.8e-38 159.8 88 83.0
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 9.8e-38 159.8 92 81.5
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 1.3e-37 159.5 93 81.7
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 1.7e-37 159.1 93 78.5
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 1.7e-37 159.1 93 80.6
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 1.7e-37 159.1 93 80.6
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 2.9e-37 158.3 93 79.6
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 2.9e-37 158.3 93 79.6
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 4.9e-37 157.5 93 80.6
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 4.9e-37 157.5 93 81.7
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 4.9e-37 157.5 92 79.3
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 4.9e-37 157.5 92 78.3
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 6.4e-37 157.1 88 83.0
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 8.3e-37 156.8 93 79.6
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 8.3e-37 156.8 93 79.6
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 8.3e-37 156.8 93 79.6
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 1.1e-36 156.4 93 78.5
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 1.1e-36 156.4 93 79.6
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 1.1e-36 156.4 93 78.5
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 1.1e-36 156.4 93 78.5
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 1.1e-36 156.4 93 79.6
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 1.4e-36 156.0 93 78.5
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 2.4e-36 155.2 93 76.3
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 2.4e-36 155.2 93 77.4
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 2.4e-36 155.2 93 77.4
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 2.4e-36 155.2 93 80.6
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 2.4e-36 155.2 93 78.5
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 4.1e-36 154.5 92 79.3
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 4.1e-36 154.5 93 79.6
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 4.1e-36 154.5 93 77.4
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 4.1e-36 154.5 93 77.4
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 5.4e-36 154.1 90 80.0
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 5.4e-36 154.1 90 80.0
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 7.0e-36 153.7 92 78.3
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 7.0e-36 153.7 93 79.6
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 7.0e-36 153.7 93 78.5
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 1.2e-35 152.9 93 78.5
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 1.6e-35 152.5 94 77.7
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 1.6e-35 152.5 94 78.7
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 2.0e-35 152.1 87 81.6
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 2.0e-35 152.1 93 74.2
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 2.0e-35 152.1 93 77.4
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 2.7e-35 151.8 94 78.7
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 2.7e-35 151.8 93 76.3
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 2.7e-35 151.8 93 76.3
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 3.5e-35 151.4 85 83.5
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 3.5e-35 151.4 84 83.3
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 3.5e-35 151.4 93 76.3
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 3.5e-35 151.4 93 77.4
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 4.6e-35 151.0 91 76.9
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 6.0e-35 150.6 93 76.3
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 7.8e-35 150.2 90 77.8
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 7.8e-35 150.2 92 77.2
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 7.8e-35 150.2 89 79.8
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 1.0e-34 149.8 92 76.1
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 1.0e-34 149.8 87 78.2
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 1.0e-34 149.8 87 78.2
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 1.0e-34 149.8 93 74.2
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 1.3e-34 149.4 93 77.4
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 1.3e-34 149.4 93 75.3
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.3e-34 149.4 93 74.2
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 1.3e-34 149.4 84 83.3
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 1.7e-34 149.1 93 75.3
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 1.7e-34 149.1 91 76.9
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 2.3e-34 148.7 92 75.0
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 2.3e-34 148.7 94 77.7
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 3.0e-34 148.3 92 76.1
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 3.0e-34 148.3 94 76.6
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 3.0e-34 148.3 86 81.4
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 3.0e-34 148.3 93 74.2
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 3.9e-34 147.9 86 79.1
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 3.9e-34 147.9 93 75.3
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 8.6e-34 146.7 93 73.1
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 8.6e-34 146.7 88 77.3
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 8.6e-34 146.7 88 77.3
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 8.6e-34 146.7 88 77.3
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 1.1e-33 146.4 88 76.1
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 1.5e-33 146.0 88 76.1
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 1.5e-33 146.0 88 76.1
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 1.9e-33 145.6 88 77.3
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 1.9e-33 145.6 88 76.1
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 1.9e-33 145.6 94 75.5
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 1.9e-33 145.6 94 75.5
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 1.9e-33 145.6 88 76.1
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 1.9e-33 145.6 94 75.5
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 1.9e-33 145.6 94 75.5
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 1.9e-33 145.6 94 75.5
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 1.9e-33 145.6 79 82.3
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 1.9e-33 145.6 79 82.3
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 2.5e-33 145.2 90 75.6
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 3.3e-33 144.8 94 74.5
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 3.3e-33 144.8 86 79.1
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 2.1e-32 142.1 93 72.0
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 3.6e-32 141.4 88 71.6
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 4.7e-32 141.0 88 72.7
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 4.7e-32 141.0 93 71.0
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 6.2e-32 140.6 82 79.3
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 8.1e-32 140.2 88 73.9
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 8.1e-32 140.2 87 73.6
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 1.1e-31 139.8 87 73.6
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 2.3e-31 138.7 92 71.7
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 4.0e-31 137.9 84 75.0
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 6.8e-31 137.1 78 78.2
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 6.8e-31 137.1 78 78.2
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 6.8e-31 137.1 78 78.2
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 8.9e-31 136.7 93 71.0
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 1.2e-30 136.3 116 60.3
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 1.7e-29 132.5 94 69.1
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 2.2e-29 132.1 93 69.9
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 3.7e-29 131.3 92 69.6
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 6.4e-29 130.6 116 57.8
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 1.1e-28 129.8 70 85.7
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 1.4e-28 129.4 71 85.9
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 4.1e-28 127.9 76 75.0
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 7.1e-28 127.1 71 80.3
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 9.2e-28 126.7 76 76.3
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 9.2e-28 126.7 87 69.0
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 1.2e-27 126.3 70 82.9
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 1.6e-27 125.9 82 70.7
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 3.5e-27 124.8 70 81.4
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 3.5e-27 124.8 87 71.3
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 3.5e-27 124.8 71 78.9
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 7.8e-27 123.6 70 80.0
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 7.8e-27 123.6 70 80.0
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 1.3e-26 122.9 71 81.7
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 1.8e-23 112.5 67 73.1
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 2.3e-23 112.1 71 74.6
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 6.8e-23 110.5 95 57.9
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 1.7e-21 105.9 70 74.3
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 2.2e-21 105.5 86 62.8
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 2.9e-21 105.1 98 55.1
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 5.4e-20 100.9 50 88.0
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 1.6e-19 99.4 90 58.9
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 7.8e-19 97.1 82 57.3
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 5.1e-18 94.4 90 50.0
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 2.5e-17 92.0 89 51.7
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 3.1e-15 85.1 48 79.2
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 5.2e-15 84.3 83 48.2
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.2e-14 83.2 51 68.6
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.2e-14 83.2 51 68.6
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.2e-14 83.2 51 68.6
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.2e-14 83.2 51 68.6
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.5e-14 82.8 58 63.8
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 4.4e-14 81.3 49 75.5
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 6.4e-13 77.4 47 66.0
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 5.4e-12 74.3 49 65.3
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 3.0e-10 68.6 54 57.4
MBI04_g21152_MAGBIO Magnolia biondii HOM05D004240 ORTHO05D005082 1.5e-09 66.2 44 68.2
PRCOL_00003521 Prasinoderma coloniale HOM05D004240 ORTHO05D005082 4.3e-09 64.7 56 53.6
TWI56G0038 Tripterygium wilfordii HOM05D004240 ORTHO05D413666 4.4e-06 54.7 26 92.3


User provided reference genes

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