Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 1.5e-74 282.7 138 100.0
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 2.3e-27 125.9 91 70.3
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 7.5e-26 120.9 67 92.5
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 7.5e-26 120.9 67 92.5
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 2.2e-25 119.4 67 91.0
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.8e-24 116.3 67 88.1
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 4.3e-21 105.1 58 91.4
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 9.5e-21 104.0 64 78.1
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 3.6e-20 102.1 64 78.1
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 1.4e-19 100.1 67 76.1
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 1.8e-19 99.8 62 77.4
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 1.8e-19 99.8 64 75.0
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 2.3e-19 99.4 67 74.6
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 5.2e-19 98.2 67 74.6
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 1.5e-18 96.7 60 78.3
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 1.5e-18 96.7 64 75.0
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 2.0e-18 96.3 58 79.3
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 2.0e-18 96.3 60 76.7
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 2.6e-18 95.9 67 73.1
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 3.4e-18 95.5 59 78.0
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 4.4e-18 95.1 62 74.2
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 7.5e-18 94.4 58 79.3
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 7.5e-18 94.4 64 70.3
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 9.8e-18 94.0 60 76.7
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 9.8e-18 94.0 58 79.3
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 9.8e-18 94.0 58 77.6
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 9.8e-18 94.0 57 80.7
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 9.8e-18 94.0 64 70.3
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 1.3e-17 93.6 60 75.0
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 1.3e-17 93.6 60 71.7
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 1.3e-17 93.6 58 77.6
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 1.7e-17 93.2 62 74.2
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 2.2e-17 92.8 58 77.6
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 2.2e-17 92.8 58 77.6
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 2.2e-17 92.8 58 77.6
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 2.2e-17 92.8 58 77.6
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 2.2e-17 92.8 58 77.6
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 2.2e-17 92.8 62 71.0
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 2.2e-17 92.8 62 71.0
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 3.7e-17 92.0 58 74.1
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 3.7e-17 92.0 58 74.1
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 3.7e-17 92.0 53 84.9
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 3.7e-17 92.0 60 71.7
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 4.9e-17 91.7 60 73.3
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 6.4e-17 91.3 64 68.8
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 6.4e-17 91.3 58 79.3
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 6.4e-17 91.3 64 67.2
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 8.3e-17 90.9 63 71.4
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 8.3e-17 90.9 58 75.9
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 8.3e-17 90.9 56 78.6
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 8.3e-17 90.9 56 78.6
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 8.3e-17 90.9 61 70.5
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 8.3e-17 90.9 63 71.4
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 1.1e-16 90.5 60 71.7
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 1.1e-16 90.5 60 73.3
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 1.1e-16 90.5 64 71.9
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 1.4e-16 90.1 58 77.6
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.9e-16 89.7 54 79.6
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 1.9e-16 89.7 57 75.4
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 2.4e-16 89.4 60 68.3
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 2.4e-16 89.4 60 71.7
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 2.4e-16 89.4 64 65.6
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 2.4e-16 89.4 64 70.3
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 3.2e-16 89.0 54 77.8
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 4.1e-16 88.6 57 71.9
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 4.1e-16 88.6 60 71.7
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 4.1e-16 88.6 53 79.2
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 5.4e-16 88.2 60 70.0
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 5.4e-16 88.2 58 72.4
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 7.0e-16 87.8 54 74.1
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 7.0e-16 87.8 58 74.1
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 9.2e-16 87.4 54 74.1
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 9.2e-16 87.4 60 68.3
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 9.2e-16 87.4 60 68.3
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 1.2e-15 87.0 56 73.2
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 1.2e-15 87.0 58 70.7
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 1.2e-15 87.0 59 69.5
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 1.2e-15 87.0 62 69.4
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 1.6e-15 86.7 60 70.0
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 1.6e-15 86.7 62 67.7
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 1.6e-15 86.7 58 72.4
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 2.0e-15 86.3 60 68.3
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 2.0e-15 86.3 56 73.2
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 2.7e-15 85.9 60 68.3
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 2.7e-15 85.9 64 64.1
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 2.7e-15 85.9 60 70.0
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 3.5e-15 85.5 53 73.6
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 1.0e-14 84.0 60 68.3
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 1.3e-14 83.6 65 61.5
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 1.3e-14 83.6 59 64.4
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 1.7e-14 83.2 55 74.5
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.7e-14 83.2 53 73.6
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 1.7e-14 83.2 61 72.1
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 1.7e-14 83.2 64 65.6
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 1.7e-14 83.2 64 65.6
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 1.7e-14 83.2 52 73.1
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 2.3e-14 82.8 58 69.0
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 3.0e-14 82.4 58 65.5
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 6.6e-14 81.3 58 69.0
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 6.6e-14 81.3 63 60.3
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 1.1e-13 80.5 58 69.0
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 1.5e-13 80.1 52 71.2
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 2.5e-13 79.3 60 66.7
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 7.3e-13 77.8 55 63.6
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 2.1e-12 76.3 66 54.5
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 3.6e-12 75.5 64 53.1
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 4.7e-12 75.1 60 60.0
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 1.1e-11 73.9 49 71.4
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 3.1e-11 72.4 67 61.2
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 6.8e-11 71.2 58 55.2
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 8.9e-11 70.9 47 70.2
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 4.4e-10 68.6 47 68.1
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 5.8e-10 68.2 51 64.7
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 7.1e-08 61.2 47 59.6
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 7.8e-07 57.8 30 93.3
FAN23G2555 Fragaria x ananassa HOM05D037044 ORTHO05D035755 1.0e-06 57.4 33 81.8
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 1.3e-06 57.0 52 50.0


User provided reference genes

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