Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.7e-66 253.8 125 100.0
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.7e-64 249.2 124 98.4
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.7e-64 249.2 124 98.4
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.8e-63 245.7 124 97.6
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 2.4e-63 245.4 124 97.6
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 4.1e-63 244.6 124 96.0
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 2.6e-62 241.9 124 96.0
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.5e-62 241.1 124 96.0
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 1.7e-61 239.2 124 92.7
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 2.9e-61 238.4 124 93.5
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 3.8e-61 238.0 124 95.2
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 1.9e-60 235.7 124 92.7
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 9.4e-60 233.4 124 92.7
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 4.7e-59 231.1 124 89.5
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 1.0e-58 229.9 124 91.1
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.4e-58 229.6 124 92.7
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 3.9e-58 228.0 124 87.1
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.7e-58 227.3 124 88.7
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 8.8e-58 226.9 124 87.9
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 1.1e-57 226.5 124 87.9
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 2.6e-57 225.3 124 87.9
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 4.4e-57 224.6 124 86.3
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 4.4e-57 224.6 124 86.3
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 5.7e-57 224.2 124 88.7
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 7.4e-57 223.8 124 87.1
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 7.4e-57 223.8 124 87.1
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 1.7e-56 222.6 124 87.1
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 1.7e-56 222.6 124 84.7
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 2.8e-56 221.9 124 86.3
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 4.8e-56 221.1 124 86.3
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 6.3e-56 220.7 124 87.1
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 6.3e-56 220.7 124 87.1
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 6.3e-56 220.7 124 86.3
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 6.3e-56 220.7 124 87.9
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 1.4e-55 219.5 124 85.5
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 1.4e-55 219.5 124 86.3
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.4e-55 219.5 124 84.7
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.8e-55 219.2 124 85.5
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 1.8e-55 219.2 124 84.7
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 3.1e-55 218.4 124 87.1
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 4.1e-55 218.0 124 84.7
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 5.3e-55 217.6 124 83.9
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 5.3e-55 217.6 124 82.3
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 7.0e-55 217.2 124 86.3
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 9.1e-55 216.9 123 85.4
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 1.6e-54 216.1 124 82.3
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 1.6e-54 216.1 124 81.5
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 2.0e-54 215.7 124 79.8
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 2.0e-54 215.7 124 84.7
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 3.5e-54 214.9 124 82.3
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 3.5e-54 214.9 124 80.6
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 3.5e-54 214.9 124 83.9
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 3.5e-54 214.9 124 84.7
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 4.5e-54 214.5 124 84.7
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 4.5e-54 214.5 124 83.1
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 4.5e-54 214.5 124 83.9
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 5.9e-54 214.2 124 79.8
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 5.9e-54 214.2 124 79.0
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 1.7e-53 212.6 124 81.5
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 1.7e-53 212.6 124 80.6
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 1.7e-53 212.6 124 80.6
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 1.7e-53 212.6 124 79.8
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 1.7e-53 212.6 124 80.6
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 2.9e-53 211.8 124 82.3
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 3.8e-53 211.5 124 83.1
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 5.0e-53 211.1 124 79.8
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 5.0e-53 211.1 124 85.5
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 5.0e-53 211.1 124 83.1
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 6.5e-53 210.7 124 79.0
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 8.5e-53 210.3 124 79.0
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 1.1e-52 209.9 124 81.5
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.1e-52 209.9 124 82.3
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 2.5e-52 208.8 124 82.3
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 3.2e-52 208.4 124 80.6
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 3.2e-52 208.4 124 83.1
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 3.2e-52 208.4 124 82.3
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 4.2e-52 208.0 124 80.6
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 4.2e-52 208.0 124 79.0
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 4.2e-52 208.0 124 78.2
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 5.5e-52 207.6 124 81.5
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 7.2e-52 207.2 124 80.6
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 7.2e-52 207.2 124 79.8
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 7.2e-52 207.2 124 79.8
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 7.2e-52 207.2 124 81.5
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 9.4e-52 206.8 124 79.0
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 9.4e-52 206.8 124 77.4
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 9.4e-52 206.8 124 82.3
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 9.4e-52 206.8 124 80.6
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 9.4e-52 206.8 124 80.6
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 1.2e-51 206.5 124 79.0
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 1.2e-51 206.5 124 78.2
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 1.2e-51 206.5 124 77.4
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 1.2e-51 206.5 124 81.5
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 2.1e-51 205.7 124 77.4
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 3.6e-51 204.9 124 79.0
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 3.6e-51 204.9 124 79.0
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 3.6e-51 204.9 124 79.8
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 4.7e-51 204.5 125 80.0
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 4.7e-51 204.5 125 79.2
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 8.0e-51 203.8 124 78.2
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 1.0e-50 203.4 124 75.0
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 1.0e-50 203.4 124 77.4
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 1.4e-50 203.0 124 78.2
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.4e-50 203.0 124 78.2
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.4e-50 203.0 122 83.6
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.4e-50 203.0 122 83.6
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 5.2e-50 201.1 124 77.4
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 1.2e-49 199.9 124 79.0
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 1.2e-49 199.9 124 77.4
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 1.2e-49 199.9 124 78.2
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 5.7e-49 197.6 124 77.4
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 9.7e-49 196.8 124 76.6
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 9.7e-49 196.8 124 78.2
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 9.7e-49 196.8 124 77.4
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.7e-48 196.1 124 75.8
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 1.7e-48 196.1 160 65.0
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 2.2e-48 195.7 127 81.1
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 2.8e-48 195.3 123 76.4
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 4.8e-48 194.5 123 74.0
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 4.8e-48 194.5 124 75.0
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 6.3e-48 194.1 124 76.6
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 8.2e-48 193.7 134 73.1
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.1e-47 193.4 124 76.6
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 5.3e-47 191.0 124 71.8
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 2.9e-45 185.3 129 72.9
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 8.5e-45 183.7 123 73.2
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 2.5e-44 182.2 123 69.9
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.1e-43 179.1 206 49.0
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 4.7e-43 177.9 124 74.2
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 2.3e-42 175.6 126 69.8
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 8.3e-40 167.2 105 76.2
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 1.0e-37 160.2 91 84.6
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 2.9e-37 158.7 124 58.9
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.9e-37 158.7 116 68.1
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 3.8e-37 158.3 92 82.6
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 6.5e-37 157.5 123 58.5
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 1.9e-36 156.0 93 82.8
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 2.5e-36 155.6 122 61.5
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 1.0e-34 150.2 88 83.0
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 1.8e-34 149.4 123 61.8
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 4.0e-34 148.3 85 82.4
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 4.0e-34 148.3 111 68.5
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 6.8e-34 147.5 97 75.3
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 1.5e-33 146.4 109 67.9
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 8.3e-32 140.6 102 69.6
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 8.3e-32 140.6 125 55.2
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 1.4e-31 139.8 71 95.8
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 4.5e-30 134.8 119 59.7
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.0e-29 131.3 85 78.8
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 8.6e-29 130.6 82 78.0
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 8.6e-29 130.6 85 76.5
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.5e-28 129.0 85 72.9
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 3.3e-28 128.6 75 80.0
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 4.7e-27 124.8 95 67.4
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 5.2e-26 121.3 88 67.0
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 7.5e-25 117.5 77 75.3
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.9e-23 112.8 85 65.9
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 7.0e-23 110.9 124 44.4
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 1.7e-16 89.7 101 53.5
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 8.3e-16 87.4 85 50.6
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 6.6e-13 77.8 39 89.7
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 1.6e-11 73.2 40 90.0
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 2.8e-11 72.4 43 83.7
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 2.8e-11 72.4 111 32.4
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 1.1e-10 70.5 49 65.3
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 3.1e-10 68.9 39 84.6
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 4.0e-10 68.6 67 52.2
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 1.5e-09 66.6 38 76.3
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 1.5e-09 66.6 39 69.2
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 3.4e-09 65.5 122 32.8
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 4.4e-09 65.1 38 81.6


User provided reference genes

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