Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.4e-197 691.0 338 100.0
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 5.8e-189 664.1 331 97.9
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.9e-188 661.0 331 97.3
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.4e-187 658.7 331 97.3
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 7.6e-173 610.5 331 90.6
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 5.0e-156 554.7 331 80.7
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 3.6e-154 548.5 323 82.0
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 2.2e-143 512.7 322 77.0
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 6.3e-143 511.1 329 76.0
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 9.1e-142 507.3 323 73.4
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 9.1e-142 507.3 329 74.2
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 2.0e-141 506.1 326 75.5
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 2.7e-141 505.8 320 75.6
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 5.9e-141 504.6 305 79.3
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.9e-139 499.6 332 69.9
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 3.2e-139 498.8 321 74.5
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 7.2e-139 497.7 342 68.1
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 2.7e-138 495.7 322 72.7
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 3.6e-138 495.4 332 69.6
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 3.6e-138 495.4 323 72.1
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 1.8e-137 493.0 332 69.3
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 2.3e-137 492.7 329 72.0
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 3.0e-137 492.3 316 72.2
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 8.8e-137 490.7 321 73.2
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 2.6e-136 489.2 326 71.2
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 7.5e-136 487.6 321 72.9
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 1.7e-135 486.5 314 72.0
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 3.7e-135 485.3 369 64.0
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 4.1e-134 481.9 320 72.2
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 4.1e-134 481.9 314 71.7
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 7.0e-134 481.1 325 72.3
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.6e-133 479.9 320 70.0
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.6e-133 479.9 320 70.0
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 3.5e-133 478.8 327 68.8
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 4.5e-133 478.4 326 69.0
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 7.7e-133 477.6 328 69.5
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 1.3e-132 476.9 326 68.7
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 2.2e-132 476.1 388 63.7
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.2e-132 476.1 328 70.4
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 3.8e-132 475.3 326 70.2
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 7.2e-131 471.1 319 70.2
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 1.2e-130 470.3 319 70.2
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 4.7e-130 468.4 327 67.6
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 8.0e-130 467.6 326 67.5
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 8.0e-130 467.6 314 70.1
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 1.0e-129 467.2 358 64.8
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 1.0e-129 467.2 300 74.7
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 3.0e-129 465.7 328 69.5
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 6.8e-129 464.5 329 69.0
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 8.8e-129 464.2 327 69.1
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 1.2e-128 463.8 314 70.7
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 1.5e-128 463.4 307 71.3
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 1.5e-128 463.4 315 70.8
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 4.4e-128 461.8 313 70.9
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 4.4e-128 461.8 366 62.8
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 4.4e-128 461.8 321 69.5
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 7.5e-128 461.1 326 68.7
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 9.8e-128 460.7 326 67.8
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 9.8e-128 460.7 315 68.9
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 1.3e-127 460.3 326 69.0
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 1.7e-127 459.9 326 68.4
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 2.8e-127 459.1 314 68.2
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 8.3e-127 457.6 326 68.1
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 8.3e-127 457.6 315 69.2
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 1.8e-126 456.4 330 67.3
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 3.1e-126 455.7 327 67.6
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 7.0e-126 454.5 327 67.0
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 7.7e-125 451.1 345 64.9
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 7.7e-125 451.1 345 64.9
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 2.9e-124 449.1 320 67.5
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 1.1e-123 447.2 322 68.3
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 7.3e-123 444.5 320 67.8
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.6e-122 443.4 311 68.8
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 2.3e-121 439.5 312 67.3
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 4.0e-121 438.7 321 65.1
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 1.2e-120 437.2 298 70.8
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 1.3e-119 433.7 310 67.1
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 2.9e-119 432.6 322 65.2
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 1.3e-116 423.7 323 64.7
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 3.0e-116 422.5 282 71.6
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 8.6e-116 421.0 276 72.5
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 8.6e-116 421.0 317 64.7
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 1.1e-115 420.6 313 64.9
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 1.9e-115 419.9 301 66.8
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 1.9e-115 419.9 301 67.4
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.2e-114 417.2 314 64.6
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 3.6e-114 415.6 270 71.1
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 3.6e-114 415.6 363 59.2
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 3.6e-114 415.6 315 63.5
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 3.1e-113 412.5 306 66.0
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 3.7e-111 405.6 261 70.9
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 2.4e-110 402.9 272 69.5
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 9.5e-107 391.0 322 59.3
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 1.2e-106 390.6 311 59.2
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 2.1e-106 389.8 251 71.7
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 3.6e-106 389.0 329 63.5
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 6.2e-106 388.3 249 73.1
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 3.1e-105 386.0 347 60.5
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 1.5e-104 383.6 336 61.6
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 2.4e-102 376.3 319 58.0
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 7.8e-101 371.3 321 60.1
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.3e-100 370.5 330 60.9
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 3.0e-100 369.4 330 60.6
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 3.0e-100 369.4 319 57.4
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 6.6e-100 368.2 396 51.3
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 8.6e-100 367.9 330 60.9
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 3.3e-99 365.9 328 56.7
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 7.3e-99 364.8 338 59.8
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.2e-98 364.0 246 70.3
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 2.3e-97 359.8 335 55.5
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 1.2e-96 357.5 330 60.9
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 8.4e-95 351.3 209 77.0
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 3.5e-93 345.9 325 59.4
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 1.3e-92 344.0 230 70.0
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.7e-92 343.6 313 55.3
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 3.3e-91 339.3 293 58.7
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 3.1e-89 332.8 331 55.6
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 6.9e-89 331.6 247 64.0
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 1.5e-88 330.5 406 48.3
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 4.4e-88 328.9 300 55.7
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 9.3e-86 321.2 284 58.5
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 2.8e-82 309.7 250 60.8
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 6.7e-76 288.5 305 49.5
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.2e-69 267.7 310 44.8
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 4.3e-67 259.2 302 45.4
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 5.3e-65 252.3 311 43.1
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 4.5e-64 249.2 327 42.2
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.9e-63 245.7 302 42.1
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 4.6e-61 239.2 147 75.5
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.1e-57 228.0 241 50.2
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 4.6e-53 212.6 251 46.2
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 6.1e-53 212.2 134 71.6
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 1.9e-51 207.2 166 62.0
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 2.2e-50 203.8 160 58.1
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 3.7e-50 203.0 113 84.1
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 4.8e-50 202.6 252 41.7
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 4.1e-49 199.5 317 40.1
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 1.1e-46 191.4 199 46.2
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.9e-46 190.7 303 37.0
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 1.4e-41 174.5 250 41.2
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 1.2e-37 161.4 289 36.7
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 1.8e-36 157.5 94 73.4
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 8.2e-34 148.7 254 35.0
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 4.2e-30 136.3 393 29.5
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 9.4e-30 135.2 245 33.5
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.1e-25 121.7 260 31.2
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 5.3e-25 119.4 185 35.7
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 7.0e-25 119.0 68 80.9
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 7.0e-25 119.0 68 80.9
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 1.6e-24 117.9 68 79.4
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.0e-23 115.2 157 41.4
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 5.0e-23 112.8 119 42.0
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.2e-22 109.8 164 34.1
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 9.4e-22 108.6 105 41.9
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 1.2e-21 108.2 305 30.5
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 4.0e-20 103.2 84 58.3
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 5.2e-20 102.8 353 26.3
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 1.3e-18 98.2 212 31.1
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 7.0e-17 92.4 60 70.0
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 2.0e-16 90.9 251 27.9
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 4.2e-14 83.2 80 57.5
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 6.1e-13 79.3 81 50.6
COL.COLO4_33299 Corchorus olitorius HOM05D004272 ORTHO05D005020 2.4e-09 67.4 47 68.1


User provided reference genes

Program Settings