Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G0746 Fragaria x ananassa HOM05D006151 ORTHO05D007487 9.7e-127 456.8 233 100.0
FAN24G0867 Fragaria x ananassa HOM05D006151 ORTHO05D007487 3.8e-123 444.9 234 97.4
FvH4_2g13650 Fragaria vesca HOM05D006151 ORTHO05D007487 1.5e-122 443.0 234 97.0
FAN15G1313 Fragaria x ananassa HOM05D006151 ORTHO05D007487 3.2e-122 441.8 234 97.4
FAN27G2560 Fragaria x ananassa HOM05D006151 ORTHO05D007487 3.6e-121 438.3 234 96.2
RcHm_v2.0_Chr6g0275291 Rosa chinensis HOM05D006151 ORTHO05D007487 3.4e-111 405.2 233 89.7
Prupe.8G031400 Prunus persica HOM05D006151 ORTHO05D007487 1.0e-83 313.9 246 69.9
MD10G1026200 Malus domestica HOM05D006151 ORTHO05D007487 8.1e-81 304.3 244 68.0
MD05G1026900 Malus domestica HOM05D006151 ORTHO05D007487 1.4e-80 303.5 244 67.6
CiPaw.15G015800 Carya illinoinensis HOM05D006151 ORTHO05D007487 3.0e-75 285.8 234 67.1
CANSAT25G1414 Cannabis sativa HOM05D006151 ORTHO05D007487 1.9e-74 283.1 251 59.8
COL.COLO4_04528 Corchorus olitorius HOM05D006151 ORTHO05D007487 5.6e-74 281.6 249 62.7
Lj5g0026688 Lotus japonicus HOM05D006151 ORTHO05D007487 7.3e-74 281.2 247 61.1
Thecc.08G153600 Theobroma cacao HOM05D006151 ORTHO05D007487 1.2e-73 280.4 235 64.7
Atru.chr13.2098 Acer truncatum HOM05D006151 ORTHO05D007487 2.8e-73 279.3 239 61.1
Cfa018318 Carpinus fangiana HOM05D006151 ORTHO05D007487 2.8e-73 279.3 234 65.4
Duzib041G0750 Durio zibethinus HOM05D006151 ORTHO05D007487 1.8e-72 276.6 246 63.0
Manes.02G180000 Manihot esculenta HOM05D006151 ORTHO05D007487 3.4e-71 272.3 235 60.4
GSVIVG01034539001 Vitis vinifera HOM05D006151 ORTHO05D007487 4.4e-71 271.9 244 60.7
Dinv25871 Davidia involucrata HOM05D006151 ORTHO05D007487 5.8e-71 271.6 247 60.7
Potri.002G067600 Populus trichocarpa HOM05D006151 ORTHO05D007487 1.3e-70 270.4 240 62.1
Nitab4.5_0001062g0090 Nicotiana tabacum HOM05D006151 ORTHO05D007487 1.7e-70 270.0 217 66.4
Phvul.007G081100 Phaseolus vulgaris HOM05D006151 ORTHO05D007487 2.2e-70 269.6 240 59.6
Ciclev10002306m.g Citrus clementina HOM05D006151 ORTHO05D007487 8.4e-70 267.7 230 59.1
CSS0023884 Camellia sinensis var. sinensis HOM05D006151 ORTHO05D007487 1.1e-69 267.3 239 60.3
Cpa.g.sc21.206 Carica papaya HOM05D006151 ORTHO05D007487 3.2e-69 265.8 253 58.5
Peaxi162Scf00599g00048 Petunia axillaris HOM05D006151 ORTHO05D007487 4.2e-69 265.4 235 63.0
CAN.G268.27 Capsicum annuum HOM05D006151 ORTHO05D007487 9.3e-69 264.2 238 60.5
Glyma.20G168200 Glycine max HOM05D006151 ORTHO05D007487 1.6e-68 263.5 236 60.6
QL02p039028 Quercus lobata HOM05D006151 ORTHO05D007487 2.7e-68 262.7 232 61.6
TAR628G1632 Trochodendron aralioides HOM05D006151 ORTHO05D007487 3.5e-68 262.3 242 59.9
Duzib116G0486 Durio zibethinus HOM05D006151 ORTHO05D007487 1.3e-67 260.4 240 59.6
Nitab4.5_0009071g0020 Nicotiana tabacum HOM05D006151 ORTHO05D007487 1.7e-67 260.0 211 66.4
Sopen04g027470 Solanum pennellii HOM05D006151 ORTHO05D007487 2.3e-67 259.6 237 62.4
Solyc04g071500.4 Solanum lycopersicum HOM05D006151 ORTHO05D007487 3.9e-67 258.8 237 62.9
TWI34G1794 Tripterygium wilfordii HOM05D006151 ORTHO05D007487 5.1e-67 258.5 231 59.3
arahy.Tifrunner.gnm1.ann1.2F6CI2 Arachis hypogaea HOM05D006151 ORTHO05D007487 1.5e-66 256.9 239 59.0
PGSC0003DMG400024091 Solanum tuberosum HOM05D006151 ORTHO05D007487 1.5e-66 256.9 237 61.6
TAR381G1121 Trochodendron aralioides HOM05D006151 ORTHO05D007487 1.5e-66 256.9 233 57.9
VMungo0720G2232 Vigna mungo HOM05D006151 ORTHO05D007487 5.6e-66 255.0 219 62.1
Lalb_Chr06g0161651 Lupinus albus HOM05D006151 ORTHO05D007487 7.3e-66 254.6 239 59.8
Actinidia04761 Actinidia chinensis HOM05D006151 ORTHO05D007487 9.6e-66 254.2 217 61.3
Eucgr.F04235 Eucalyptus grandis HOM05D006151 ORTHO05D007487 9.6e-66 254.2 235 58.3
Gorai.005G078700 Gossypium raimondii HOM05D006151 ORTHO05D007487 9.6e-66 254.2 242 58.7
Glyma.10G223700 Glycine max HOM05D006151 ORTHO05D007487 1.3e-65 253.8 216 62.5
Gohir.D02G069400 Gossypium hirsutum HOM05D006151 ORTHO05D007487 8.1e-65 251.1 242 58.3
Medtr1g098580 Medicago truncatula HOM05D006151 ORTHO05D007487 1.4e-64 250.4 244 57.8
Sed0016357 Sechium edule HOM05D006151 ORTHO05D007487 4.0e-64 248.8 245 55.1
Duzib093G0584 Durio zibethinus HOM05D006151 ORTHO05D007487 6.9e-64 248.1 237 59.5
Rhsim11G0083500 Rhododendron simsii HOM05D006151 ORTHO05D007487 6.9e-64 248.1 210 61.0
Glyma.16G166000 Glycine max HOM05D006151 ORTHO05D007487 4.5e-63 245.4 238 58.0
Dinv41078 Davidia involucrata HOM05D006151 ORTHO05D007487 2.9e-62 242.7 247 57.5
Psat6g192320 Pisum sativum HOM05D006151 ORTHO05D007487 2.4e-61 239.6 242 55.4
vmacro01457 Vaccinium macrocarpon HOM05D006151 ORTHO05D007487 2.4e-61 239.6 222 60.4
Cc10_g14430 Coffea canephora HOM05D006151 ORTHO05D007487 4.2e-61 238.8 232 54.7
Gohir.A02G063800 Gossypium hirsutum HOM05D006151 ORTHO05D007487 7.1e-61 238.0 221 58.8
Gohir.D05G244900 Gossypium hirsutum HOM05D006151 ORTHO05D007487 9.3e-61 237.7 242 54.5
MSTRG.1087 Avicennia marina HOM05D006151 ORTHO05D007487 2.7e-60 236.1 226 57.1
Potri.005G192800 Populus trichocarpa HOM05D006151 ORTHO05D007487 6.0e-60 235.0 240 54.6
Hma1.2p1_0105F.1_g050630 Hydrangea macrophylla HOM05D006151 ORTHO05D007487 7.9e-60 234.6 245 55.5
TPR.G17045 Trifolium pratense HOM05D006151 ORTHO05D007487 6.7e-59 231.5 243 53.9
ClCG08G007050 Citrullus lanatus HOM05D006151 ORTHO05D007487 1.9e-58 229.9 251 51.0
Oeu046040.1 Olea europaea HOM05D006151 ORTHO05D007487 1.9e-58 229.9 235 54.5
VMungo0464G0684 Vigna mungo HOM05D006151 ORTHO05D007487 1.9e-58 229.9 217 59.4
PGR044G2378 Punica granatum HOM05D006151 ORTHO05D007487 5.6e-58 228.4 241 50.2
PGR100G0011 Punica granatum HOM05D006151 ORTHO05D007487 5.6e-58 228.4 241 50.2
Gorai.009G254700 Gossypium raimondii HOM05D006151 ORTHO05D007487 9.6e-58 227.6 242 52.9
PSO210G3290 Papaver somniferum HOM05D006151 ORTHO05D007487 1.6e-57 226.9 242 50.4
DCAR_001140 Daucus carota HOM05D006151 ORTHO05D007487 8.1e-57 224.6 215 57.7
Nn5g28758 Nelumbo nucifera HOM05D006151 ORTHO05D007487 2.4e-56 223.0 238 51.7
MELO3C008336.2 Cucumis melo HOM05D006151 ORTHO05D007487 4.0e-56 222.2 251 49.4
Phvul.004G093600 Phaseolus vulgaris HOM05D006151 ORTHO05D007487 4.0e-56 222.2 214 56.1
PSO447G0272 Papaver somniferum HOM05D006151 ORTHO05D007487 5.3e-56 221.9 242 48.8
AL1G34140 Arabidopsis lyrata HOM05D006151 ORTHO05D007487 1.2e-55 220.7 237 51.9
Gohir.A05G243900 Gossypium hirsutum HOM05D006151 ORTHO05D007487 1.5e-55 220.3 221 54.3
THA.LOC104813720 Tarenaya hassleriana HOM05D006151 ORTHO05D007487 1.5e-55 220.3 219 53.4
Ca_10677_v3 Cicer arietinum L. HOM05D006151 ORTHO05D007487 3.4e-55 219.2 221 57.5
Migut.C00998 Erythranthe guttata HOM05D006151 ORTHO05D007487 4.5e-55 218.8 232 53.0
Nn1g06074 Nelumbo nucifera HOM05D006151 ORTHO05D007487 5.8e-55 218.4 243 49.8
Sp1g18760 Schrenkiella parvula HOM05D006151 ORTHO05D007487 5.8e-55 218.4 232 50.9
CARHR021560 Cardamine hirsuta HOM05D006151 ORTHO05D007487 9.9e-55 217.6 232 52.6
Manes.18G092600 Manihot esculenta HOM05D006151 ORTHO05D007487 1.3e-54 217.2 214 56.1
PGR080G0005 Punica granatum HOM05D006151 ORTHO05D007487 1.7e-54 216.9 227 50.7
Aqoxy5G02075 Aquilegia oxysepala HOM05D006151 ORTHO05D007487 3.8e-54 215.7 212 58.5
AT1G21090 Arabidopsis thaliana HOM05D006151 ORTHO05D007487 1.4e-53 213.8 231 51.1
AUR62013592 Chenopodium quinoa HOM05D006151 ORTHO05D007487 1.9e-53 213.4 243 50.2
SGA_v2.0_scaffold24G10349 Striga asiatica HOM05D000219 ORTHO05D000226 2.4e-53 213.0 204 55.9
BcaB07g32102 Brassica carinata HOM05D006151 ORTHO05D007487 9.3e-53 211.1 239 49.8
Carub.0001s2055 Capsella rubella HOM05D006151 ORTHO05D007487 9.3e-53 211.1 240 50.4
Peaxi162Scf01294g00115 Petunia axillaris HOM05D006151 ORTHO05D007487 2.1e-52 209.9 233 53.2
Hund26694 Selenicereus undatus HOM05D006151 ORTHO05D007487 2.1e-52 209.9 242 47.1
AUR62026702 Chenopodium quinoa HOM05D006151 ORTHO05D007487 2.7e-52 209.5 215 51.6
BcaB03g14281 Brassica carinata HOM05D006151 ORTHO05D007487 6.0e-52 208.4 237 50.6
C05p19820 Brassica napus HOM05D006151 ORTHO05D007487 6.0e-52 208.4 232 51.7
BolC5t30681H Brassica oleracea HOM05D006151 ORTHO05D007487 6.0e-52 208.4 232 51.7
BraA06t24819Z Brassica rapa HOM05D006151 ORTHO05D007487 6.0e-52 208.4 232 51.7
THA.LOC104812035 Tarenaya hassleriana HOM05D006151 ORTHO05D007487 1.3e-51 207.2 212 51.9
TWI60G0448 Tripterygium wilfordii HOM05D006151 ORTHO05D007487 1.3e-51 207.2 233 51.1
A06p17160 Brassica napus HOM05D006151 ORTHO05D007487 3.0e-51 206.1 232 51.3
MBI09_g40713_MAGBIO Magnolia biondii HOM05D006151 ORTHO05D007487 6.7e-51 204.9 212 55.2
HanXRQChr05g0161971 Helianthus annuus HOM05D006151 ORTHO05D007487 6.2e-49 198.4 266 45.5
Nitab4.5_0002487g0030 Nicotiana tabacum HOM05D006151 ORTHO05D007487 2.4e-48 196.4 196 56.6
arahy.Tifrunner.gnm1.ann1.5IW37T Arachis hypogaea HOM05D006151 ORTHO05D007487 4.0e-48 195.7 241 48.1
CsaV3_6G005160 Cucumis sativus L. HOM05D006151 ORTHO05D007487 1.5e-47 193.7 228 48.2
Hund17438 Selenicereus undatus HOM05D006151 ORTHO05D007487 5.8e-47 191.8 250 44.0
ECA246G2194 Erigeron canadensis HOM05D006151 ORTHO05D007487 1.0e-46 191.0 279 45.9
Sed0009804 Sechium edule HOM05D006151 ORTHO05D007487 1.3e-46 190.7 231 48.1
Lsat_1_v5_gn_6_100560 Lactuca sativa HOM05D006151 ORTHO05D007487 6.5e-46 188.3 278 45.0
EL10Ac1g01556 Beta vulgaris HOM05D006151 ORTHO05D007487 8.4e-46 188.0 204 51.5
Thhalv10008611m.g Eutrema salsugineum HOM05D006151 ORTHO05D007487 5.5e-45 185.3 239 45.6
Aa31LG7G5240 Aethionema arabicum HOM05D006151 ORTHO05D007487 3.5e-44 182.6 187 50.8
C07p22470 Brassica napus HOM05D006151 ORTHO05D007487 1.1e-42 177.6 187 52.9
BcaC06g34887 Brassica carinata HOM05D006151 ORTHO05D007487 9.7e-42 174.5 187 52.4
BolC7t42748H Brassica oleracea HOM05D006151 ORTHO05D007487 9.7e-42 174.5 187 52.4
BraA07t29267Z Brassica rapa HOM05D006151 ORTHO05D007487 1.6e-41 173.7 185 51.9
A07p15290 Brassica napus HOM05D006151 ORTHO05D007487 1.4e-40 170.6 185 51.4
BcaC05g26017 Brassica carinata HOM05D006151 ORTHO05D007487 5.3e-40 168.7 196 50.5
Actinidia29533 Actinidia chinensis HOM05D006151 ORTHO05D007487 3.2e-37 159.5 131 62.6
Nitab4.5_0010143g0010 Nicotiana tabacum HOM05D006151 ORTHO05D007487 8.7e-35 151.4 231 44.6
unitig_748.g7705 Utricularia gibba HOM05D006151 ORTHO05D007487 8.7e-35 151.4 232 41.4
Ah.05g167920 Amaranthus hybridus HOM05D006151 ORTHO05D007487 6.3e-33 145.2 213 41.3
HPP92_004418 Vanilla planifolia HOM05D006151 ORTHO05D007487 2.6e-26 123.2 233 33.9
Lj7C374T8 Lonicera japonica HOM05D006151 ORTHO05D007487 2.2e-25 120.2 142 52.8
CDE08G0602 Ceratophyllum demersum HOM05D006151 ORTHO05D007487 1.4e-24 117.5 238 38.2
Sc02g0004030 Simmondsia chinensis HOM05D006151 ORTHO05D007487 7.7e-23 111.7 159 47.2
Peaxi162Scf00476g00615 Petunia axillaris HOM05D002901 ORTHO05D003183 1.2e-20 104.4 80 67.5
Nn1g02131 Nelumbo nucifera HOM05D006151 ORTHO05D007487 3.1e-16 89.7 177 36.7
GSVIVG01026618001 Vitis vinifera HOM05D006151 ORTHO05D007487 1.5e-13 80.9 113 44.2
AUR62044379 Chenopodium quinoa HOM05D006151 ORTHO05D007487 2.2e-09 67.0 207 25.6
Oeu016600.1 Olea europaea HOM05D006151 ORTHO05D007487 8.2e-09 65.1 55 58.2
AagrBONN_evm.TU.Sc2ySwM_295.7 Anthoceros agrestis HOM05D024008 ORTHO05D007487 1.8e-08 63.9 149 36.2
Pp3c15_7400 Physcomitrium patens HOM05D000098 ORTHO05D000523 1.2e-07 61.2 91 36.3
AagrBONN_evm.TU.Sc2ySwM_228.3977 Anthoceros agrestis HOM05D024008 ORTHO05D000523 6.5e-06 55.5 106 34.0


User provided reference genes

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