Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G0590 Fragaria x ananassa HOM05D007988 ORTHO05D009824 1.1e-84 316.6 169 100.0
FvH4_2g35040 Fragaria vesca HOM05D007988 ORTHO05D009824 4.5e-81 304.7 168 96.4
FAN15G1013 Fragaria x ananassa HOM05D007988 ORTHO05D009824 5.0e-80 301.2 168 95.8
FAN27G1764 Fragaria x ananassa HOM05D007988 ORTHO05D009824 7.2e-79 297.4 168 95.8
RcHm_v2.0_Chr6g0306951 Rosa chinensis HOM05D007988 ORTHO05D009824 2.4e-74 282.3 171 89.5
Prupe.1G442100 Prunus persica HOM05D007988 ORTHO05D009824 1.9e-31 139.8 182 56.6
MD15G1088100 Malus domestica HOM05D007988 ORTHO05D009824 2.2e-27 126.3 208 47.1
QL09p030989 Quercus lobata HOM05D007988 ORTHO05D009824 5.0e-24 115.2 158 50.6
Haze_17653 Corylus avellana HOM05D007988 ORTHO05D009824 6.6e-24 114.8 153 51.6
Ciclev10004037m.g Citrus clementina HOM05D007988 ORTHO05D009824 2.5e-23 112.8 169 52.7
CiPaw.15G029500 Carya illinoinensis HOM05D007988 ORTHO05D009824 4.7e-22 108.6 174 46.6
Duzib041G0811 Durio zibethinus HOM05D007988 ORTHO05D009824 2.6e-20 102.8 168 47.0
Atru.chr13.1616 Acer truncatum HOM05D007988 ORTHO05D009824 3.4e-20 102.4 165 46.1
Manes.02G170000 Manihot esculenta HOM05D007988 ORTHO05D009824 9.8e-20 100.9 169 46.7
Potri.002G076200 Populus trichocarpa HOM05D007988 ORTHO05D009824 1.3e-19 100.5 158 48.7
CiPaw.16G021200 Carya illinoinensis HOM05D007988 ORTHO05D009824 1.7e-19 100.1 163 47.2
Duzib116G0104 Durio zibethinus HOM05D007988 ORTHO05D009824 1.7e-19 100.1 168 46.4
Thecc.08G135700 Theobroma cacao HOM05D007988 ORTHO05D009824 2.2e-19 99.8 158 46.2
TAR381G0794 Trochodendron aralioides HOM05D007988 ORTHO05D009824 2.9e-19 99.4 147 51.7
COL.COLO4_33785 Corchorus olitorius HOM05D007988 ORTHO05D009824 2.4e-18 96.3 166 46.4
TWI60G0631 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 3.2e-18 95.9 156 46.2
TWI34G1662 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 4.1e-18 95.5 161 44.7
Sabra05G0140800 Salix brachista HOM05D007988 ORTHO05D009824 5.4e-18 95.1 160 48.1
Duzib093G1224 Durio zibethinus HOM05D007988 ORTHO05D009824 2.7e-17 92.8 164 44.5
GSVIVG01008783001 Vitis vinifera HOM05D007988 ORTHO05D009824 2.7e-17 92.8 166 47.0
Actinidia29496 Actinidia chinensis HOM05D000744 ORTHO05D000332 7.8e-17 91.3 153 43.8
Dinv37735 Davidia involucrata HOM05D007988 ORTHO05D009824 1.3e-16 90.5 133 50.4
Gohir.A05G239200 Gossypium hirsutum HOM05D007988 ORTHO05D009824 1.7e-16 90.1 172 44.2
Gohir.D05G240900 Gossypium hirsutum HOM05D007988 ORTHO05D009824 6.6e-16 88.2 201 39.3
Gorai.009G250000 Gossypium raimondii HOM05D007988 ORTHO05D009824 6.6e-16 88.2 201 39.3
Rhsim11G0074200 Rhododendron simsii HOM05D007988 ORTHO05D009824 1.5e-15 87.0 191 39.8
CSS0046822 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 4.3e-15 85.5 177 42.9
MELO3C008455.2 Cucumis melo HOM05D007988 ORTHO05D009824 5.6e-15 85.1 139 47.5
CsaV3_6G031310 Cucumis sativus L. HOM05D007988 ORTHO05D009824 9.5e-15 84.3 139 48.2
Cpa.g.sc64.159 Carica papaya HOM05D007988 ORTHO05D009824 2.8e-14 82.8 148 43.9
CSS0018515 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 4.7e-14 82.0 140 45.7
Glyma.06G119000 Glycine max HOM05D007988 ORTHO05D009824 4.0e-13 79.0 166 39.2
Phvul.009G131400 Phaseolus vulgaris HOM05D007988 ORTHO05D009824 4.0e-13 79.0 169 38.5
ECA232G2067 Erigeron canadensis HOM05D007988 ORTHO05D009824 5.2e-13 78.6 163 41.7
ClCG08G006150 Citrullus lanatus HOM05D007988 ORTHO05D009824 8.9e-13 77.8 137 48.2
Lj4P663T19 Lonicera japonica HOM05D007988 ORTHO05D009824 1.2e-12 77.4 169 40.8
Medtr3g088735 Medicago truncatula HOM05D007988 ORTHO05D009824 1.2e-12 77.4 165 37.6
Psat0s3071g0240 Pisum sativum HOM05D007988 ORTHO05D009824 1.5e-12 77.0 162 40.1
Sed0016946 Sechium edule HOM05D007988 ORTHO05D009824 1.5e-12 77.0 139 50.4
VMungo1309G2256 Vigna mungo HOM05D007988 ORTHO05D009824 1.5e-12 77.0 162 38.3
Lj4P666T14 Lonicera japonica HOM05D007988 ORTHO05D009824 2.0e-12 76.6 171 39.8
Nn1g08990 Nelumbo nucifera HOM05D007988 ORTHO05D009824 2.0e-12 76.6 162 44.4
Glyma.04G244300 Glycine max HOM05D007988 ORTHO05D009824 2.6e-12 76.3 188 37.8
Lj1g0027207 Lotus japonicus HOM05D007988 ORTHO05D009824 3.4e-12 75.9 161 39.8
Ca_16619_v3 Cicer arietinum L. HOM05D007988 ORTHO05D009824 4.4e-12 75.5 175 41.1
Eucgr.F02525 Eucalyptus grandis HOM05D007988 ORTHO05D009824 1.7e-11 73.6 174 37.4
TPR.G6352 Trifolium pratense HOM05D007988 ORTHO05D009824 1.7e-11 73.6 161 38.5
Nn5g28477 Nelumbo nucifera HOM05D007988 ORTHO05D009824 2.2e-11 73.2 182 37.9
Lalb_Chr04g0253601 Lupinus albus HOM05D007988 ORTHO05D009824 2.4e-10 69.7 157 37.6
CAN.G46.16 Capsicum annuum HOM05D007988 ORTHO05D009824 6.0e-09 65.1 173 37.6
Cc10_g13460 Coffea canephora HOM05D007988 ORTHO05D009824 6.0e-09 65.1 168 37.5
AL1G34650 Arabidopsis lyrata HOM05D012069 ORTHO05D009824 2.3e-08 63.2 169 34.9
AT1G21510 Arabidopsis thaliana HOM05D012069 ORTHO05D009824 2.3e-08 63.2 162 34.6
arahy.Tifrunner.gnm1.ann1.GX31L7 Arachis hypogaea HOM05D007988 ORTHO05D009824 2.3e-08 63.2 174 35.1
THA.LOC104813286 Tarenaya hassleriana HOM05D012069 ORTHO05D009824 2.3e-08 63.2 153 37.9
Carub.0001s2093 Capsella rubella HOM05D012069 ORTHO05D009824 3.0e-08 62.8 172 39.0
SGA_v2.0_scaffold52G18904 Striga asiatica HOM05D007988 ORTHO05D009824 3.0e-08 62.8 142 40.1
A06p17540 Brassica napus HOM05D012069 ORTHO05D009824 3.9e-08 62.4 135 39.3
BraA06t24850Z Brassica rapa HOM05D012069 ORTHO05D009824 3.9e-08 62.4 135 39.3
CARHR021870 Cardamine hirsuta HOM05D012069 ORTHO05D009824 3.9e-08 62.4 153 35.9
arahy.Tifrunner.gnm1.ann1.1JY9DA Arachis hypogaea HOM05D007988 ORTHO05D009824 5.1e-08 62.0 172 34.9
Oeu022143.1 Olea europaea HOM05D007988 ORTHO05D009824 5.1e-08 62.0 195 33.8
Sp1g19040 Schrenkiella parvula HOM05D012069 ORTHO05D009824 5.1e-08 62.0 157 35.7
EL10Ac1g01385 Beta vulgaris HOM05D007988 ORTHO05D009824 8.6e-08 61.2 153 39.9
AUR62007686 Chenopodium quinoa HOM05D007988 ORTHO05D009824 1.1e-07 60.8 168 35.7
BcaB07g32147 Brassica carinata HOM05D012069 ORTHO05D009824 1.9e-07 60.1 148 35.1
PGSC0003DMG400002385 Solanum tuberosum HOM05D007988 ORTHO05D009824 2.5e-07 59.7 180 35.6
DCAR_003597 Daucus carota HOM05D007988 ORTHO05D009824 3.3e-07 59.3 162 35.8
Lalb_Chr10g0101461 Lupinus albus HOM05D007988 ORTHO05D009824 7.3e-07 58.2 160 36.2
Thhalv10009526m.g Eutrema salsugineum HOM05D012069 ORTHO05D009824 9.5e-07 57.8 182 32.4
AUR62013453 Chenopodium quinoa HOM05D007988 ORTHO05D009824 2.8e-06 56.2 169 33.1
HanXRQChr09g0256671 Helianthus annuus HOM05D007988 ORTHO05D009824 2.8e-06 56.2 154 40.3


User provided reference genes

Program Settings