Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G0586 Fragaria x ananassa HOM05D002484 ORTHO05D002541 7.4e-49 196.8 95 100.0
Prupe.8G071600 Prunus persica HOM05D002484 ORTHO05D002541 6.1e-27 124.0 95 62.1
FAN20G2159 Fragaria x ananassa HOM05D002484 ORTHO05D002541 5.7e-25 117.5 95 66.3
FvH4_2g11470 Fragaria vesca HOM05D002484 ORTHO05D002541 8.2e-24 113.6 95 64.2
COL.COLO4_25963 Corchorus olitorius HOM05D002484 ORTHO05D002541 1.5e-12 76.3 90 47.8
HanXRQChr03g0074221 Helianthus annuus HOM05D002484 ORTHO05D002541 5.5e-12 74.3 70 47.1
HanXRQChr03g0074231 Helianthus annuus HOM05D002484 ORTHO05D002541 5.5e-12 74.3 70 47.1
HanXRQChr03g0074241 Helianthus annuus HOM05D002484 ORTHO05D002541 5.5e-12 74.3 70 47.1
Peaxi162Scf00324g00715 Petunia axillaris HOM05D002484 ORTHO05D002541 1.2e-11 73.2 81 50.6
COL.COLO4_25966 Corchorus olitorius HOM05D002484 ORTHO05D002541 1.6e-11 72.8 81 46.9
Atru.chr5.3054 Acer truncatum HOM05D002484 ORTHO05D002541 2.1e-11 72.4 87 49.4
Migut.N00483 Erythranthe guttata HOM05D002484 ORTHO05D002541 2.1e-11 72.4 91 41.8
Peaxi162Scf00324g00722 Petunia axillaris HOM05D002484 ORTHO05D002541 2.1e-11 72.4 94 48.9
COL.COLO4_25964 Corchorus olitorius HOM05D002484 ORTHO05D002541 2.8e-11 72.0 91 42.9
Peaxi162Scf00324g00716 Petunia axillaris HOM05D002484 ORTHO05D002541 2.8e-11 72.0 82 51.2
Atru.chr5.3052 Acer truncatum HOM05D002484 ORTHO05D002541 4.7e-11 71.2 85 48.2
Carub.0001s1915 Capsella rubella HOM05D002484 ORTHO05D002541 6.1e-11 70.9 77 46.8
ECA236G3870 Erigeron canadensis HOM05D002484 ORTHO05D002541 6.1e-11 70.9 76 50.0
Sed0028225 Sechium edule HOM05D002484 ORTHO05D002541 1.0e-10 70.1 79 48.1
TWI75G1456 Tripterygium wilfordii HOM05D002484 ORTHO05D002541 1.0e-10 70.1 80 45.0
AT1G19610 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 1.8e-10 69.3 77 45.5
HanXRQChr16g0505831 Helianthus annuus HOM05D002484 ORTHO05D002541 1.8e-10 69.3 95 43.2
PGR031G2841 Punica granatum HOM05D002484 ORTHO05D002541 3.0e-10 68.6 85 43.5
BolC8t49576H Brassica oleracea HOM05D002484 ORTHO05D002541 4.0e-10 68.2 77 45.5
AL1G32330 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 5.2e-10 67.8 77 44.2
BraA08t34910Z Brassica rapa HOM05D002484 ORTHO05D002541 5.2e-10 67.8 77 45.5
BcaB03g12908 Brassica carinata HOM05D002484 ORTHO05D002541 6.8e-10 67.4 82 46.3
Carub.0007s0108 Capsella rubella HOM05D002484 ORTHO05D002541 6.8e-10 67.4 87 47.1
Aa31LG7G4230 Aethionema arabicum HOM05D002484 ORTHO05D002541 8.8e-10 67.0 62 50.0
Sp1g17450 Schrenkiella parvula HOM05D002484 ORTHO05D002541 8.8e-10 67.0 77 44.2
C06p46130 Brassica napus HOM05D002484 ORTHO05D002541 1.2e-09 66.6 91 44.0
BolC6t39666H Brassica oleracea HOM05D002484 ORTHO05D002541 1.2e-09 66.6 91 44.0
Thhalv10009242m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 1.5e-09 66.2 79 45.6
TWI56G0984 Tripterygium wilfordii HOM05D002484 ORTHO05D002541 1.5e-09 66.2 79 46.8
DCAR_028974 Daucus carota HOM05D002484 ORTHO05D002541 2.0e-09 65.9 76 43.4
MD08G1027500 Malus domestica HOM05D002484 ORTHO05D002541 2.0e-09 65.9 54 50.0
BcaB03g14925 Brassica carinata HOM05D002484 ORTHO05D002541 2.6e-09 65.5 85 41.2
BcaC08g46653 Brassica carinata HOM05D002484 ORTHO05D002541 2.6e-09 65.5 61 50.8
PSO302G0221 Papaver somniferum HOM05D018786 ORTHO05D002541 2.6e-09 65.5 79 43.0
Glyma.18G027700 Glycine max HOM05D002484 ORTHO05D002541 3.4e-09 65.1 60 53.3
Lsat_1_v5_gn_5_65860 Lactuca sativa HOM05D002484 ORTHO05D002541 3.4e-09 65.1 82 42.7
Thecc.02G082200 Theobroma cacao HOM05D002484 ORTHO05D002541 3.4e-09 65.1 77 44.2
FAN20G1957 Fragaria x ananassa HOM05D002484 ORTHO05D002541 4.4e-09 64.7 79 40.5
Atru.chr13.431 Acer truncatum HOM05D002484 ORTHO05D002541 5.7e-09 64.3 85 47.1
HanXRQChr16g0505511 Helianthus annuus HOM05D002484 ORTHO05D002541 5.7e-09 64.3 82 42.7
HanXRQChr16g0505521 Helianthus annuus HOM05D002484 ORTHO05D002541 5.7e-09 64.3 82 42.7
Actinidia27667 Actinidia chinensis HOM05D002484 ORTHO05D002541 7.5e-09 63.9 79 44.3
RcHm_v2.0_Chr6g0301471 Rosa chinensis HOM05D002484 ORTHO05D002541 7.5e-09 63.9 79 41.8
ECA236G2706 Erigeron canadensis HOM05D002484 ORTHO05D002541 1.3e-08 63.2 82 41.5
Peaxi162Scf00324g00717 Petunia axillaris HOM05D002484 ORTHO05D002541 1.3e-08 63.2 70 47.1
ATR1149G048 Amborella trichopoda HOM05D002484 ORTHO05D002541 2.2e-08 62.4 80 41.2
Ciclev10030125m.g Citrus clementina HOM05D002484 ORTHO05D002541 2.2e-08 62.4 87 41.4
CAN.G1126.34 Capsicum annuum HOM05D002484 ORTHO05D002541 2.8e-08 62.0 79 48.1
Prupe.1G376000 Prunus persica HOM05D002484 ORTHO05D002541 2.8e-08 62.0 79 40.5
BraA07t31386Z Brassica rapa HOM05D002484 ORTHO05D002541 4.9e-08 61.2 91 41.8
CARHR247530 Cardamine hirsuta HOM05D002484 ORTHO05D002541 4.9e-08 61.2 82 47.6
PGR031G0268 Punica granatum HOM05D002484 ORTHO05D002541 4.9e-08 61.2 85 40.0
COL.COLO4_25965 Corchorus olitorius HOM05D002484 ORTHO05D002541 6.3e-08 60.8 80 47.5
CAN.G559.4 Capsicum annuum HOM05D002484 ORTHO05D002541 8.3e-08 60.5 93 41.9
DCAR_028972 Daucus carota HOM05D002484 ORTHO05D002541 8.3e-08 60.5 87 37.9
Nn3g20428 Nelumbo nucifera HOM05D002484 ORTHO05D002541 1.1e-07 60.1 89 33.7
Solyc07g009260.3 Solanum lycopersicum HOM05D002484 ORTHO05D002541 1.1e-07 60.1 79 45.6
DCAR_001564 Daucus carota HOM05D002484 ORTHO05D002541 1.8e-07 59.3 78 42.3
Duzib093G0380 Durio zibethinus HOM05D002484 ORTHO05D002541 1.8e-07 59.3 53 49.1
Solyc01g011495.1 Solanum lycopersicum HOM05D002484 ORTHO05D002541 1.8e-07 59.3 90 41.1
Carub.0007s0110 Capsella rubella HOM05D002484 ORTHO05D002541 2.4e-07 58.9 81 42.0
A05p26930 Brassica napus HOM05D002484 ORTHO05D002541 3.1e-07 58.5 81 42.0
C01p00390 Brassica napus HOM05D002484 ORTHO05D002541 3.1e-07 58.5 81 42.0
BraA05t21573Z Brassica rapa HOM05D002484 ORTHO05D002541 3.1e-07 58.5 81 42.0
MELO3C018229.2 Cucumis melo HOM05D002484 ORTHO05D002541 4.1e-07 58.2 76 39.5
A08p29750 Brassica napus HOM05D002484 ORTHO05D002541 5.4e-07 57.8 33 63.6
C08p19530 Brassica napus HOM05D002484 ORTHO05D002541 5.4e-07 57.8 33 63.6
Ciclev10029712m.g Citrus clementina HOM05D002484 ORTHO05D002541 5.4e-07 57.8 91 36.3
Ciclev10029828m.g Citrus clementina HOM05D002484 ORTHO05D002541 5.4e-07 57.8 91 36.3
TWI79G0221 Tripterygium wilfordii HOM05D002484 ORTHO05D002541 5.4e-07 57.8 91 38.5
Thhalv10029442m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 9.2e-07 57.0 81 43.2
HanXRQChr16g0506041 Helianthus annuus HOM05D002484 ORTHO05D002541 9.2e-07 57.0 77 40.3
Thecc.08G031200 Theobroma cacao HOM05D002484 ORTHO05D002541 9.2e-07 57.0 56 48.2
AL7G11150 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 1.2e-06 56.6 83 45.8
BcaC08g43338 Brassica carinata HOM05D002484 ORTHO05D002541 2.0e-06 55.8 80 40.0
Nitab4.5_0000023g0330 Nicotiana tabacum HOM05D002484 ORTHO05D002541 2.7e-06 55.5 55 49.1
Atru.chr5.3053 Acer truncatum HOM05D002484 ORTHO05D002541 3.5e-06 55.1 55 49.1
Psat4g203560 Pisum sativum HOM05D002484 ORTHO05D002541 3.5e-06 55.1 89 36.0
CsaV3_3G044510 Cucumis sativus L. HOM05D002484 ORTHO05D002541 5.9e-06 54.3 79 38.0


User provided reference genes

Program Settings