Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.2e-289 999.2 543 100.0
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.8e-285 985.3 543 98.5
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 9.1e-285 983.0 543 98.2
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 2.0e-279 965.3 546 96.7
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 2.0e-279 965.3 546 96.7
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 4.6e-252 874.4 548 87.4
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 4.9e-214 748.0 558 75.8
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 1.8e-208 729.6 553 72.5
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 2.1e-204 716.1 562 72.8
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 4.6e-204 714.9 555 72.1
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 1.3e-203 713.4 543 71.8
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 8.7e-203 710.7 549 70.5
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 1.9e-202 709.5 563 70.3
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 2.8e-201 705.7 563 70.3
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 5.8e-199 698.0 566 68.9
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 7.6e-199 697.6 551 69.1
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 3.8e-198 695.3 548 71.7
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 3.8e-198 695.3 563 68.7
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 5.0e-198 694.9 561 71.3
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 2.5e-197 692.6 553 71.4
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 1.6e-196 689.9 546 68.5
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 1.6e-196 689.9 522 73.8
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 1.0e-195 687.2 563 68.6
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 6.7e-195 684.5 558 69.7
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 1.1e-194 683.7 564 69.0
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 7.4e-194 681.0 547 68.7
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 7.4e-194 681.0 560 71.2
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 1.6e-193 679.9 539 67.7
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 3.7e-193 678.7 562 66.5
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 4.8e-193 678.3 545 67.9
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 6.3e-193 677.9 552 67.4
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 6.3e-193 677.9 551 67.7
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 8.2e-193 677.6 558 66.8
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 8.2e-193 677.6 558 67.2
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 1.8e-192 676.4 551 67.5
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 4.1e-192 675.2 555 66.3
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 4.1e-192 675.2 559 68.5
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 2.0e-191 672.9 532 69.0
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 2.0e-191 672.9 560 68.6
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 2.6e-191 672.5 531 69.1
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 2.6e-191 672.5 543 68.9
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 7.7e-191 671.0 540 67.4
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 7.7e-191 671.0 554 66.2
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 1.7e-190 669.8 539 67.3
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 2.2e-190 669.5 553 66.9
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 2.9e-190 669.1 531 68.7
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 2.9e-190 669.1 554 66.2
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 2.9e-190 669.1 557 64.8
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 3.8e-190 668.7 543 66.9
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 6.5e-190 667.9 554 65.9
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 8.5e-190 667.5 552 66.5
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 1.9e-189 666.4 555 67.2
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 7.2e-189 664.5 550 66.9
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 1.2e-188 663.7 560 66.2
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 4.6e-188 661.8 555 66.3
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 4.6e-188 661.8 544 66.4
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 7.9e-188 661.0 552 66.3
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 1.8e-187 659.8 530 68.5
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 3.0e-187 659.1 562 66.7
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 3.0e-187 659.1 535 67.9
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 3.9e-187 658.7 546 67.8
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 5.1e-187 658.3 560 68.2
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 6.7e-187 657.9 558 66.3
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 1.5e-186 656.8 544 66.5
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 2.5e-186 656.0 532 69.9
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 9.7e-186 654.1 550 65.5
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 6.3e-185 651.4 555 65.2
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 8.2e-185 651.0 539 67.2
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 1.1e-184 650.6 551 64.6
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 4.1e-184 648.7 558 67.4
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 5.3e-184 648.3 552 65.6
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 5.3e-184 648.3 552 65.6
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 1.2e-183 647.1 552 65.4
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 7.7e-183 644.4 543 67.2
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 5.0e-182 641.7 554 64.8
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 6.5e-182 641.3 557 64.5
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 1.4e-181 640.2 565 64.4
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 2.5e-181 639.4 549 64.3
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 2.7e-180 636.0 468 73.9
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 2.3e-179 632.9 576 62.8
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 6.7e-179 631.3 504 66.7
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 7.4e-178 627.9 555 64.7
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 9.7e-178 627.5 580 62.4
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 6.3e-177 624.8 569 63.4
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 5.3e-176 621.7 560 62.1
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 1.3e-174 617.1 556 62.8
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 2.9e-174 615.9 562 61.9
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 5.0e-174 615.1 609 59.3
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 8.0e-172 607.8 546 62.5
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 1.8e-171 606.7 495 66.1
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 2.6e-170 602.8 574 60.1
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 1.3e-169 600.5 564 61.0
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 8.5e-166 587.8 590 58.5
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 4.4e-162 575.5 540 61.1
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 2.0e-151 540.0 444 65.8
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 9.2e-144 514.6 591 50.3
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 4.6e-143 512.3 515 60.8
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 1.2e-127 461.1 495 57.8
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 3.5e-127 459.5 531 54.8
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 5.1e-126 455.7 402 65.2
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 2.1e-119 433.7 467 52.9
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 1.1e-115 421.4 349 68.8
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 2.4e-112 410.2 464 53.0
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 2.3e-110 403.7 354 64.4
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 2.8e-108 396.7 327 66.1
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 2.6e-106 390.2 306 68.3
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 3.8e-105 386.3 306 69.3
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 2.4e-104 383.6 276 73.6
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 4.6e-103 379.4 521 44.0
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 2.4e-99 367.1 381 55.6
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 6.9e-99 365.5 306 67.0
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 2.2e-97 360.5 306 66.3
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 4.9e-97 359.4 396 54.3
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 7.4e-93 345.5 349 58.2
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 1.3e-92 344.7 349 58.2
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 8.4e-89 332.0 582 37.3
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 6.0e-87 325.9 566 38.0
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 1.0e-86 325.1 272 68.8
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 4.2e-80 303.1 583 36.2
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 7.9e-71 272.3 273 60.1
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 1.8e-70 271.2 173 80.9
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 1.9e-48 198.0 559 29.9
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 3.2e-48 197.2 185 57.8
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 3.6e-47 193.7 258 48.4
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 1.4e-46 191.8 183 60.7
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 2.7e-39 167.5 126 71.4
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 4.9e-36 156.8 367 27.5
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 5.4e-35 153.3 446 26.9
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 8.0e-31 139.4 88 81.8
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 3.0e-30 137.5 102 70.6
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 4.4e-29 133.7 429 28.0
Migut.B00916 Erythranthe guttata HOM05D005160 ORTHO05D006127 7.8e-26 122.9 86 73.3
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 3.0e-25 120.9 351 27.1
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 7.3e-24 116.3 541 24.6
VMungo1080G0079 Vigna mungo HOM05D005160 ORTHO05D006127 5.2e-22 110.2 147 48.3
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 5.8e-21 106.7 125 47.2
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 2.2e-20 104.8 517 25.9
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 3.9e-17 94.0 444 23.4
CDE04G1166 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 9.5e-16 89.4 125 40.8
MD08G1139200 Malus domestica HOM05D005160 ORTHO05D006127 3.2e-11 74.3 110 50.9
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 4.1e-11 73.9 228 33.3
arahy.Tifrunner.gnm1.ann1.P6ZXGF Arachis hypogaea HOM05D005032 ORTHO05D006268 5.1e-09 67.0 219 26.0
SalBow8G5398 Salvia bowleyana HOM05D005032 ORTHO05D006268 7.3e-08 63.2 216 26.9
ECA234G2686 Erigeron canadensis HOM05D005032 ORTHO05D006268 9.5e-08 62.8 217 26.7
Lsat_1_v5_gn_4_18881 Lactuca sativa HOM05D005032 ORTHO05D006268 9.5e-08 62.8 217 26.7
vmacro01369 Vaccinium macrocarpon HOM05D005032 ORTHO05D006268 1.2e-07 62.4 219 26.5
CiPaw.16G004100 Carya illinoinensis HOM05D005032 ORTHO05D006268 1.6e-07 62.0 269 27.1
Cre06.g278550 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 1.6e-07 62.0 393 22.1
Oeu041892.2 Olea europaea HOM05D005032 ORTHO05D006268 2.1e-07 61.6 216 25.5
MSTRG.2252 Avicennia marina HOM05D005032 ORTHO05D006268 2.8e-07 61.2 214 26.6
PRCOL_00001307 Prasinoderma coloniale HOM05D003356 ORTHO05D004362 2.8e-07 61.2 338 25.7
AagrBONN_evm.TU.Sc2ySwM_362.248 Anthoceros agrestis HOM05D003356 ORTHO05D004362 3.6e-07 60.8 341 26.7
ECA246G3837 Erigeron canadensis HOM05D005032 ORTHO05D006268 3.6e-07 60.8 218 28.4
HanXRQChr16g0529611 Helianthus annuus HOM05D005032 ORTHO05D006268 3.6e-07 60.8 217 26.3
Rhsim12G0082300 Rhododendron simsii HOM05D005032 ORTHO05D006268 3.6e-07 60.8 218 28.0
VMungo1215G1708 Vigna mungo HOM05D005032 ORTHO05D006268 4.7e-07 60.5 219 24.7
TWI79G0027 Tripterygium wilfordii HOM05D005032 ORTHO05D006268 8.1e-07 59.7 219 24.7
Phvul.003G028700 Phaseolus vulgaris HOM05D005032 ORTHO05D006268 1.1e-06 59.3 219 24.2
HanXRQChr17g0552231 Helianthus annuus HOM05D005032 ORTHO05D006268 1.8e-06 58.5 218 27.5
unitig_699.g19492 Utricularia gibba HOM05D005032 ORTHO05D006268 1.8e-06 58.5 227 26.9
FvH4_4g27760 Fragaria vesca HOM05D005032 ORTHO05D006268 2.3e-06 58.2 217 26.7
FAN07G0299 Fragaria x ananassa HOM05D005032 ORTHO05D006268 2.3e-06 58.2 217 27.2
FAN12G2852 Fragaria x ananassa HOM05D005032 ORTHO05D006268 2.3e-06 58.2 217 26.7
FAN22G0537 Fragaria x ananassa HOM05D005032 ORTHO05D006268 2.3e-06 58.2 217 27.2
Potri.010G128100 Populus trichocarpa HOM05D005032 ORTHO05D006268 2.3e-06 58.2 219 24.2
PGSC0003DMG402012961 Solanum tuberosum HOM05D005032 ORTHO05D006268 2.3e-06 58.2 219 25.1
Migut.E00317 Erythranthe guttata HOM05D005032 ORTHO05D006268 3.1e-06 57.8 216 25.0
RcHm_v2.0_Chr7g0187121 Rosa chinensis HOM05D005160 ORTHO05D006127 3.1e-06 57.8 45 68.9
SEGI_10382 Sequoiadendron giganteum HOM05D005032 ORTHO05D006268 3.1e-06 57.8 254 24.4
SEGI_21847 Sequoiadendron giganteum HOM05D003356 ORTHO05D004362 3.1e-06 57.8 321 24.6
Ca_19113_v3 Cicer arietinum L. HOM05D005032 ORTHO05D006268 4.0e-06 57.4 219 24.7
Mapoly0029s0041 Marchantia polymorpha HOM05D002512 ORTHO05D002660 4.0e-06 57.4 229 23.1
PGR102G0428 Punica granatum HOM05D005032 ORTHO05D006268 4.0e-06 57.4 218 23.9
Zm00001eb245170 Zea mays HOM05D005032 ORTHO05D006268 4.0e-06 57.4 183 26.2
EL10Ac6g14461 Beta vulgaris HOM05D005032 ORTHO05D006268 5.2e-06 57.0 218 23.9
AUR62002904 Chenopodium quinoa HOM05D005032 ORTHO05D006268 5.2e-06 57.0 217 26.3
AUR62035263 Chenopodium quinoa HOM05D005032 ORTHO05D006268 5.2e-06 57.0 217 26.3
Pp3c19_5950 Physcomitrium patens HOM05D002512 ORTHO05D002660 5.2e-06 57.0 226 24.8
Mapoly0004s0207 Marchantia polymorpha HOM05D005032 ORTHO05D006268 6.8e-06 56.6 188 26.6
THA.LOC104808234 Tarenaya hassleriana HOM05D005032 ORTHO05D006268 8.9e-06 56.2 220 24.5


User provided reference genes

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