Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G0414 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.6e-135 485.0 249 100.0
FAN12G3067 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.8e-95 352.4 263 72.6
FvH4_7g00320 Fragaria vesca HOM05D000034 ORTHO05D000277 1.3e-92 343.6 275 69.1
FAN24G2067 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.1e-91 340.5 276 68.8
FvH4_7g11552 Fragaria vesca HOM05D000034 ORTHO05D000277 1.9e-88 329.7 261 69.7
FvH4_1g22560 Fragaria vesca HOM05D000034 ORTHO05D000037 9.5e-80 300.8 169 89.3
FAN11G0226 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.9e-76 289.3 240 67.5
FAN03G2645 Fragaria x ananassa HOM05D000034 ORTHO05D000277 7.1e-75 284.6 239 69.5
FAN21G1005 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.9e-73 278.9 277 60.3
FAN22G1985 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.1e-71 273.1 169 83.4
FAN24G1441 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.8e-70 270.0 158 86.7
FAN28G1917 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.4e-69 265.8 292 51.0
FAN25G0710 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.9e-68 262.7 292 50.7
FvH4_2g09412 Fragaria vesca HOM05D000034 ORTHO05D000277 3.2e-67 259.2 261 59.0
FAN25G0666 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.1e-64 250.8 276 51.4
FAN28G1335 Fragaria x ananassa HOM05D000034 ORTHO05D000277 6.9e-62 241.5 196 70.4
RcHm_v2.0_Chr1g0373591 Rosa chinensis HOM05D000034 ORTHO05D000277 3.8e-60 235.7 282 50.4
FvH4_1g24290 Fragaria vesca HOM05D000034 ORTHO05D000277 1.5e-56 223.8 153 78.4
FAN22G0450 Fragaria x ananassa HOM05D000034 ORTHO05D000277 4.3e-56 222.2 173 67.1
FAN13G2412 Fragaria x ananassa HOM05D000034 ORTHO05D000277 8.1e-55 218.0 277 46.6
FAN02G0050 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.0e-53 213.4 162 68.5
FvH4_6g09145 Fragaria vesca HOM05D000034 ORTHO05D000277 2.6e-53 213.0 183 67.8
FvH4_1g18411 Fragaria vesca HOM05D000034 ORTHO05D000277 5.8e-53 211.8 282 44.7
FAN02G4058 Fragaria x ananassa HOM05D000034 ORTHO05D000277 5.8e-53 211.8 192 63.0
FAN08G2368 Fragaria x ananassa HOM05D000034 ORTHO05D000277 5.8e-53 211.8 162 67.9
FAN12G0701 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.8e-52 209.1 215 59.5
FvH4_2g04031 Fragaria vesca HOM05D000034 ORTHO05D000277 2.4e-51 206.5 281 43.8
FAN26G0732 Fragaria x ananassa HOM05D000034 ORTHO05D000277 4.2e-51 205.7 275 47.3
FAN05G4941 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.3e-49 199.9 129 86.0
FAN05G0075 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.3e-48 196.1 135 77.8
FAN15G3165 Fragaria x ananassa HOM05D000034 ORTHO05D000277 9.0e-46 188.0 275 42.2
FvH4_4g15171 Fragaria vesca HOM05D000034 ORTHO05D000277 3.8e-44 182.6 266 48.5
FAN04G3245 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.8e-44 182.6 171 56.1
FAN09G0335 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.1e-43 181.0 166 57.8
FAN09G0780 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.2e-43 179.5 125 78.4
FAN17G0070 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.6e-42 177.2 287 41.1
FAN08G3309 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.5e-40 170.6 169 57.4
FAN25G0466 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.5e-40 170.6 171 53.2
FAN06G3685 Fragaria x ananassa HOM05D000034 ORTHO05D000277 5.9e-37 158.7 135 65.2
FvH4_3g15552 Fragaria vesca HOM05D000034 ORTHO05D000277 7.6e-37 158.3 161 57.1
FAN17G0186 Fragaria x ananassa HOM05D000664 ORTHO05D000491 5.0e-36 155.6 186 51.6
RcHm_v2.0_Chr7g0219611 Rosa chinensis HOM05D000034 ORTHO05D000277 1.8e-33 147.1 125 67.2
FAN09G4862 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.5e-32 144.1 116 66.4
FAN14G0405 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.9e-32 143.7 180 52.8
FAN26G2259 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.2e-31 140.2 164 51.2
FAN02G4017 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.8e-31 139.8 123 59.3
FAN20G2803 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.8e-30 137.1 146 53.4
MD10G1011200 Malus domestica HOM05D000034 ORTHO05D000277 5.9e-29 132.1 176 43.8
FvH4_2g07610 Fragaria vesca HOM05D000034 ORTHO05D000277 1.7e-28 130.6 282 34.0
CANSAT21G0305 Cannabis sativa HOM05D000034 ORTHO05D000277 2.9e-28 129.8 277 31.4
FAN20G2099 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.8e-28 129.4 148 54.7
FAN20G1514 Fragaria x ananassa HOM05D000034 ORTHO05D000277 4.2e-27 125.9 129 55.8
CANSAT11G0741 Cannabis sativa HOM05D000034 ORTHO05D000277 5.5e-27 125.6 261 31.8
CANSAT25G0805 Cannabis sativa HOM05D000034 ORTHO05D000277 1.6e-26 124.0 270 31.1
FAN21G1928 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.7e-26 123.2 73 86.3
FvH4_4g09541 Fragaria vesca HOM05D000034 ORTHO05D000277 4.7e-26 122.5 222 38.3
FAN09G3387 Fragaria x ananassa HOM05D000034 ORTHO05D000277 6.7e-25 118.6 94 64.9
FAN08G3130 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.0e-24 117.1 80 78.8
FAN17G1994 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.2e-23 113.6 169 45.0
FAN21G2311 Fragaria x ananassa HOM05D000034 ORTHO05D000277 5.3e-22 109.0 65 78.5
FAN08G2078 Fragaria x ananassa HOM05D011794 ORTHO05D000277 3.4e-21 106.3 119 56.3
FAN20G1575 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.7e-20 104.0 60 86.7
FAN24G3369 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.7e-20 104.0 154 44.8
FAN04G3119 Fragaria x ananassa HOM05D000034 ORTHO05D026272 3.8e-20 102.8 109 52.3
FAN17G2318 Fragaria x ananassa HOM05D000034 ORTHO05D000277 5.0e-20 102.4 60 86.7
FAN21G0681 Fragaria x ananassa HOM05D000034 ORTHO05D000277 8.5e-20 101.7 68 75.0
FAN15G0012 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.4e-19 100.9 56 91.1
FAN26G3355 Fragaria x ananassa HOM05D000034 ORTHO05D000277 7.2e-19 98.6 103 52.4
FvH4_3g30720 Fragaria vesca HOM05D000034 ORTHO05D000277 3.0e-17 93.2 193 34.2
FAN11G4007 Fragaria x ananassa HOM05D000034 ORTHO05D000277 8.8e-17 91.7 51 80.4
Atru.chr6.1585 Acer truncatum HOM05D000034 ORTHO05D000277 7.4e-16 88.6 280 25.7
FAN17G0198 Fragaria x ananassa HOM05D000034 ORTHO05D000277 7.4e-16 88.6 55 76.4
FAN26G2222 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.8e-14 84.0 127 46.5
FAN08G1890 Fragaria x ananassa HOM05D000034 ORTHO05D000277 5.3e-14 82.4 46 84.8
FAN21G0385 Fragaria x ananassa HOM05D000034 ORTHO05D000277 9.1e-14 81.6 101 48.5
CANSAT64G1464 Cannabis sativa HOM05D000034 ORTHO05D000277 7.7e-13 78.6 150 32.0
Hma1.2p1_0081F.1_g042220 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.0e-12 78.2 172 33.7
Hma1.2p1_0489F.1_g164000 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.3e-12 77.8 180 32.2
FvH4_2g04811 Fragaria vesca HOM05D000034 ORTHO05D000277 1.7e-12 77.4 168 35.7
TPR.G25081 Trifolium pratense HOM05D000034 ORTHO05D000277 1.7e-12 77.4 237 27.4
FAN28G0140 Fragaria x ananassa HOM05D002788 ORTHO05D025609 2.2e-12 77.0 208 27.4
FAN28G0483 Fragaria x ananassa HOM05D002788 ORTHO05D025609 2.2e-12 77.0 208 27.4
FAN20G1698 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.9e-12 76.6 154 36.4
Atru.chr2.2599 Acer truncatum HOM05D000034 ORTHO05D000277 3.8e-12 76.3 205 29.3
Ah.08g221600 Amaranthus hybridus HOM05D000034 ORTHO05D000277 3.8e-12 76.3 191 29.8
DCAR_009785 Daucus carota HOM05D001651 ORTHO05D000277 6.5e-12 75.5 192 33.9
DCAR_015799 Daucus carota HOM05D001651 ORTHO05D000277 6.5e-12 75.5 192 33.9
Actinidia06690 Actinidia chinensis HOM05D000034 ORTHO05D000277 1.1e-11 74.7 294 24.5
DCAR_018898 Daucus carota HOM05D001651 ORTHO05D000277 1.5e-11 74.3 188 33.0
TWI59G1350 Tripterygium wilfordii HOM05D000034 ORTHO05D000277 1.5e-11 74.3 296 23.3
MD15G1289200 Malus domestica HOM05D000034 ORTHO05D000277 4.2e-11 72.8 281 24.6
FAN03G2701 Fragaria x ananassa HOM05D000034 ORTHO05D000277 5.5e-11 72.4 62 54.8
FAN19G1412 Fragaria x ananassa HOM05D002788 ORTHO05D025609 9.4e-11 71.6 208 27.9
Rhsim04G0059300 Rhododendron simsii HOM05D000034 ORTHO05D000277 9.4e-11 71.6 232 27.2
vmacro07718 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 9.4e-11 71.6 232 27.6
RcHm_v2.0_Chr2g0106711 Rosa chinensis HOM05D000034 ORTHO05D025609 1.2e-10 71.2 311 21.2
DCAR_011368 Daucus carota HOM05D001651 ORTHO05D000277 2.1e-10 70.5 188 31.9
DCAR_011369 Daucus carota HOM05D001651 ORTHO05D000277 2.1e-10 70.5 188 31.9
FAN27G0647 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.1e-10 70.5 109 41.3
Lj6g0017267 Lotus japonicus HOM05D000034 ORTHO05D000277 3.6e-10 69.7 180 29.4
HanXRQChr09g0256181 Helianthus annuus HOM05D000034 ORTHO05D000277 1.8e-09 67.4 172 30.2
HanXRQChr10g0300111 Helianthus annuus HOM05D000034 ORTHO05D000277 2.3e-09 67.0 180 30.0
Lj5g0006139 Lotus japonicus HOM05D000034 ORTHO05D000277 2.3e-09 67.0 299 21.4
RhsimUnG0197200 Rhododendron simsii HOM05D000034 ORTHO05D000277 6.7e-09 65.5 287 24.7
Actinidia04327 Actinidia chinensis HOM05D000034 ORTHO05D000037 1.2e-08 64.7 241 24.9
HanXRQChr01g0013481 Helianthus annuus HOM05D000034 ORTHO05D000277 1.2e-08 64.7 182 28.0
Actinidia38160 Actinidia chinensis HOM05D000034 ORTHO05D000277 1.5e-08 64.3 178 29.2
HanXRQChr03g0061341 Helianthus annuus HOM05D000034 ORTHO05D000277 1.5e-08 64.3 135 33.3
Hma1.2p1_0122F.1_g057640 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.5e-08 64.3 235 28.1
Hma1.2p1_0672F.1_g201070 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.5e-08 64.3 245 25.3
Dinv36440 Davidia involucrata HOM05D012673 ORTHO05D000277 2.0e-08 63.9 195 27.2
Hma1.2p1_0035F.1_g021910 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.0e-08 63.9 191 25.1
Lsat_1_v5_gn_5_163260 Lactuca sativa HOM05D000034 ORTHO05D000277 2.0e-08 63.9 185 29.2
Rhsim02G0154600 Rhododendron simsii HOM05D000034 ORTHO05D000277 2.6e-08 63.5 283 23.0
Hma1.2p1_0127F.1_g059736 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 3.3e-08 63.2 191 24.6
Hma1.2p1_0286F.1_g113985 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 3.3e-08 63.2 191 24.6
EL10Ac3g05873 Beta vulgaris HOM05D000034 ORTHO05D000277 4.4e-08 62.8 192 28.1
Rhsim01G0279200 Rhododendron simsii HOM05D000034 ORTHO05D000037 4.4e-08 62.8 181 29.8
Rhsim03G0059900 Rhododendron simsii HOM05D000034 ORTHO05D000037 4.4e-08 62.8 181 30.4
Dinv07784 Davidia involucrata HOM05D000034 ORTHO05D000277 5.7e-08 62.4 104 34.6
Dinv16912 Davidia involucrata HOM05D012673 ORTHO05D000277 5.7e-08 62.4 190 30.5
Hma1.2p1_0746F.1_g212360 Hydrangea macrophylla HOM05D000454 ORTHO05D000591 5.7e-08 62.4 191 24.1
Hma1.2p1_0846F.1_g227800 Hydrangea macrophylla HOM05D000454 ORTHO05D000591 5.7e-08 62.4 191 24.1
Rhsim02G0110600 Rhododendron simsii HOM05D000034 ORTHO05D000277 5.7e-08 62.4 194 28.4
HanXRQChr13g0408861 Helianthus annuus HOM05D000034 ORTHO05D000277 7.5e-08 62.0 183 28.4
FvH4_4g08331 Fragaria vesca HOM05D000034 ORTHO05D000277 9.7e-08 61.6 159 28.3
Hma1.2p1_0165F.1_g073390 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 9.7e-08 61.6 308 20.8
Hma1.2p1_0354F.1_g133450 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 9.7e-08 61.6 191 24.1
Lj1g0019892 Lotus japonicus HOM05D000034 ORTHO05D000277 1.3e-07 61.2 287 22.6
MD17G1245100 Malus domestica HOM05D025694 ORTHO05D000277 1.3e-07 61.2 143 29.4
Actinidia03627 Actinidia chinensis HOM05D000034 ORTHO05D000277 1.7e-07 60.8 276 23.2
FAN21G1797 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.7e-07 60.8 69 43.5
EL10Ac7g17113 Beta vulgaris HOM05D000034 ORTHO05D000277 2.2e-07 60.5 195 25.1
CSS0036595 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 3.7e-07 59.7 197 26.4
Hma1.2p1_0276F.1_g111440 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 3.7e-07 59.7 191 24.1
Hma1.2p1_0664F.1_g199003 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 3.7e-07 59.7 211 25.1
Atru.chr12.953 Acer truncatum HOM05D001651 ORTHO05D000277 4.8e-07 59.3 188 28.2
TPR.G35402 Trifolium pratense HOM05D000034 ORTHO05D000277 4.8e-07 59.3 176 27.3
Atru.chr4.508 Acer truncatum HOM05D000034 ORTHO05D000277 6.3e-07 58.9 178 25.3
FAN08G2786 Fragaria x ananassa HOM05D000034 ORTHO05D000277 6.3e-07 58.9 42 57.1
FAN08G2713 Fragaria x ananassa HOM05D000034 ORTHO05D000277 8.2e-07 58.5 157 27.4
Lj1g0021510 Lotus japonicus HOM05D000034 ORTHO05D000277 8.2e-07 58.5 184 24.5
Rhsim10G0097900 Rhododendron simsii HOM05D000034 ORTHO05D000277 8.2e-07 58.5 194 28.4
arahy.Tifrunner.gnm1.ann1.L1UJFX Arachis hypogaea HOM05D000034 ORTHO05D000277 1.1e-06 58.2 256 22.3
Rhsim05G0015700 Rhododendron simsii HOM05D000034 ORTHO05D000277 1.1e-06 58.2 141 30.5
Rhsim10G0022500 Rhododendron simsii HOM05D000034 ORTHO05D000277 1.1e-06 58.2 167 25.7
SGA_v2.0_scaffold3G01632 Striga asiatica HOM05D009666 ORTHO05D000277 1.1e-06 58.2 310 20.6
Dinv02446 Davidia involucrata HOM05D000034 ORTHO05D000277 1.4e-06 57.8 192 22.9
FAN27G0974 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.4e-06 57.8 69 44.9
Hma1.2p1_0896F.1_g233910 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.4e-06 57.8 180 27.2
Lsat_1_v5_gn_7_34221 Lactuca sativa HOM05D000034 ORTHO05D000277 1.4e-06 57.8 134 32.8
Atru.chr1.2500 Acer truncatum HOM05D000034 ORTHO05D000277 1.8e-06 57.4 102 34.3
arahy.Tifrunner.gnm1.ann1.DT8XIN Arachis hypogaea HOM05D000034 ORTHO05D000037 1.8e-06 57.4 253 23.7
CSS0016960 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 1.8e-06 57.4 172 27.3
Migut.L00416 Erythranthe guttata HOM05D000034 ORTHO05D000277 1.8e-06 57.4 99 34.3
Thecc.09G268100 Theobroma cacao HOM05D000034 ORTHO05D000277 1.8e-06 57.4 192 26.6
Hma1.2p1_0026F.1_g016610 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.4e-06 57.0 202 26.2
EL10Ac1g00510 Beta vulgaris HOM05D000034 ORTHO05D000277 3.1e-06 56.6 195 26.2
ClCG05G014710 Citrullus lanatus HOM05D001651 ORTHO05D000277 3.1e-06 56.6 71 39.4
TPR.G21815 Trifolium pratense HOM05D003568 ORTHO05D004104 3.1e-06 56.6 190 24.2
Atru.chr2.3198 Acer truncatum HOM05D001651 ORTHO05D000277 4.1e-06 56.2 188 27.7
Atru.chr4.1088 Acer truncatum HOM05D000034 ORTHO05D000037 4.1e-06 56.2 178 30.3
FAN26G1288 Fragaria x ananassa HOM05D000034 ORTHO05D000277 4.1e-06 56.2 175 28.0
Hma1.2p1_0232F.1_g097920 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 4.1e-06 56.2 179 27.4
Hma1.2p1_0423F.1_g150230 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 4.1e-06 56.2 137 32.8
Hma1.2p1_0890F.1_g233020 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 4.1e-06 56.2 190 25.8
Lsat_1_v5_gn_4_94201 Lactuca sativa HOM05D000034 ORTHO05D000277 4.1e-06 56.2 114 35.1
MD01G1188100 Malus domestica HOM05D000034 ORTHO05D000277 4.1e-06 56.2 55 43.6
Nn1g01000 Nelumbo nucifera HOM05D001651 ORTHO05D000277 4.1e-06 56.2 136 30.1
Rhsim02G0247200 Rhododendron simsii HOM05D000034 ORTHO05D000277 4.1e-06 56.2 275 24.0
SGA_v2.0_scaffold17G08100 Striga asiatica HOM05D000034 ORTHO05D000277 4.1e-06 56.2 50 54.0
SGA_v2.0_scaffold283G47003 Striga asiatica HOM05D000034 ORTHO05D000277 4.1e-06 56.2 50 54.0
SGA_v2.0_scaffold84G26487 Striga asiatica HOM05D000034 ORTHO05D000277 4.1e-06 56.2 50 54.0
Hma1.2p1_0189F.1_g082820 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 5.3e-06 55.8 195 25.1
Atru.chr6.616 Acer truncatum HOM05D000034 ORTHO05D000037 7.0e-06 55.5 195 25.1
Hma1.2p1_1761F.1_g301340 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 7.0e-06 55.5 192 25.0
Lj3A351T4 Lonicera japonica HOM05D000034 ORTHO05D000277 7.0e-06 55.5 173 27.7
vmacro18938 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 7.0e-06 55.5 133 30.8
Gorai.013G143900 Gossypium raimondii HOM05D000034 ORTHO05D000277 9.1e-06 55.1 206 23.8
Hma1.2p1_0587F.1_g184020 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 9.1e-06 55.1 177 28.8
RcHm_v2.0_Chr7g0231381 Rosa chinensis HOM05D000665 ORTHO05D000140 9.1e-06 55.1 169 26.0


User provided reference genes

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