Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 7.8e-56 220.3 119 100.0
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 7.1e-49 197.2 115 93.0
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 1.0e-47 193.4 115 92.2
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.3e-47 192.2 115 90.4
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 5.1e-47 191.0 115 89.6
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 1.1e-44 183.3 115 86.1
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 3.4e-43 178.3 115 82.6
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 2.9e-42 175.3 115 81.7
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 2.9e-42 175.3 115 80.9
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 6.4e-42 174.1 115 81.7
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 8.4e-42 173.7 115 80.0
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 8.4e-42 173.7 115 80.0
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.4e-41 172.9 115 81.7
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 1.4e-41 172.9 115 80.0
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.9e-41 172.6 115 80.9
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 2.4e-41 172.2 115 80.9
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.2e-41 171.8 115 79.1
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 3.2e-41 171.8 115 79.1
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 3.2e-41 171.8 118 78.8
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 4.2e-41 171.4 116 81.9
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 5.4e-41 171.0 115 79.1
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.1e-40 169.1 116 81.0
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 2.7e-40 168.7 117 78.6
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 2.7e-40 168.7 116 80.2
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 4.6e-40 167.9 115 77.4
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 6.0e-40 167.5 116 80.2
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 6.0e-40 167.5 115 77.4
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 7.9e-40 167.2 117 78.6
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 7.9e-40 167.2 115 78.3
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 1.0e-39 166.8 117 77.8
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 1.0e-39 166.8 116 79.3
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.3e-39 166.4 116 80.2
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 1.3e-39 166.4 116 79.3
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 1.8e-39 166.0 117 79.5
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 3.9e-39 164.9 115 79.1
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 3.9e-39 164.9 116 80.2
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 3.9e-39 164.9 116 78.4
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 6.7e-39 164.1 116 78.4
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 6.7e-39 164.1 116 77.6
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 8.7e-39 163.7 115 77.4
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 1.1e-38 163.3 118 77.1
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 1.5e-38 162.9 118 76.3
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 1.5e-38 162.9 116 77.6
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 1.5e-38 162.9 117 76.9
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 1.5e-38 162.9 115 75.7
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 3.3e-38 161.8 115 75.7
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 4.3e-38 161.4 115 74.8
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 5.6e-38 161.0 104 81.7
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 5.6e-38 161.0 116 75.9
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 7.4e-38 160.6 118 75.4
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 9.6e-38 160.2 118 76.3
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 9.6e-38 160.2 115 75.7
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 1.6e-37 159.5 115 73.9
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 1.6e-37 159.5 116 76.7
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 2.1e-37 159.1 116 76.7
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 3.7e-37 158.3 115 73.9
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 4.8e-37 157.9 116 75.9
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 4.8e-37 157.9 117 75.2
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 6.2e-37 157.5 115 73.0
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 6.2e-37 157.5 115 73.0
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 6.2e-37 157.5 119 72.3
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 1.4e-36 156.4 115 73.0
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 2.4e-36 155.6 115 72.2
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 3.1e-36 155.2 113 72.6
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 3.1e-36 155.2 117 74.4
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 3.1e-36 155.2 115 72.2
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 4.0e-36 154.8 117 74.4
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 4.0e-36 154.8 118 73.7
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 4.0e-36 154.8 121 74.4
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 5.3e-36 154.5 117 73.5
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 6.9e-36 154.1 117 73.5
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 6.9e-36 154.1 120 70.8
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 9.0e-36 153.7 116 74.1
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 9.0e-36 153.7 116 74.1
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 9.0e-36 153.7 121 73.6
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 1.5e-35 152.9 115 72.2
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.5e-35 152.9 117 72.6
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 2.0e-35 152.5 117 73.5
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 2.0e-35 152.5 115 72.2
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 2.0e-35 152.5 116 72.4
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 2.6e-35 152.1 117 72.6
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 3.4e-35 151.8 115 72.2
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 7.6e-35 150.6 115 70.4
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 4.9e-34 147.9 112 70.5
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 4.9e-34 147.9 114 71.1
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 8.4e-34 147.1 118 71.2
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 2.5e-33 145.6 124 66.1
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 2.5e-33 145.6 113 71.7
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 4.2e-33 144.8 128 66.4
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 4.2e-33 144.8 128 66.4
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 4.2e-33 144.8 118 69.5
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 4.2e-33 144.8 129 65.1
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 5.5e-33 144.4 117 70.9
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 5.5e-33 144.4 125 67.2
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 7.1e-33 144.1 115 68.7
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 9.3e-33 143.7 126 66.7
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.6e-32 142.9 121 66.9
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 2.1e-32 142.5 112 71.4
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 2.1e-32 142.5 116 69.8
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 4.6e-32 141.4 141 61.0
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.0e-32 141.0 121 66.1
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.3e-31 139.8 115 66.1
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 3.0e-31 138.7 117 67.5
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 3.9e-31 138.3 118 66.1
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 5.1e-31 137.9 116 69.0
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 8.7e-31 137.1 123 65.0
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 1.1e-30 136.7 129 63.6
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 1.1e-30 136.7 125 63.2
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.1e-30 136.7 115 65.2
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 2.5e-30 135.6 132 62.1
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 2.5e-30 135.6 132 62.1
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 1.6e-29 132.9 147 54.4
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 3.7e-29 131.7 137 56.9
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 3.7e-29 131.7 116 69.0
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 1.4e-28 129.8 116 63.8
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 2.4e-28 129.0 115 65.2
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 4.1e-28 128.3 115 66.1
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 4.1e-28 128.3 115 60.0
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 6.9e-28 127.5 109 67.0
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 1.5e-27 126.3 155 51.6
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.4e-27 125.2 69 92.8
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 1.0e-26 123.6 131 56.5
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 2.2e-26 122.5 145 51.0
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 2.9e-26 122.1 97 69.1
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 5.0e-26 121.3 115 60.0
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.4e-25 119.8 99 64.6
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 1.6e-24 116.3 115 60.9
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 2.1e-24 115.9 96 68.8
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 6.1e-24 114.4 98 67.3
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 1.6e-21 106.3 145 49.7
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 4.8e-21 104.8 115 53.9
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 2.4e-20 102.4 85 64.7
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 4.1e-20 101.7 135 48.9
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 2.6e-19 99.0 85 63.5
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 5.5e-17 91.3 114 53.5
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.4e-15 86.7 58 75.9
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 2.0e-14 82.8 70 61.4
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.0e-14 82.8 57 82.5
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 2.5e-14 82.4 77 57.1
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 4.8e-13 78.2 58 77.6
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 6.3e-13 77.8 57 78.9
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 3.1e-12 75.5 90 46.7
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.1e-12 75.1 57 75.4
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 4.1e-12 75.1 57 75.4
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 6.9e-12 74.3 112 42.9
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.6e-11 72.4 57 71.9
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 3.4e-11 72.0 55 72.7
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 7.7e-11 70.9 115 43.5
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 1.7e-10 69.7 46 82.6
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 4.2e-09 65.1 72 56.9
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 4.2e-09 65.1 72 56.9
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 5.1e-07 58.2 77 50.6
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 8.8e-07 57.4 49 61.2
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 1.1e-06 57.0 51 58.8
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 1.5e-06 56.6 62 48.4
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 2.0e-06 56.2 51 58.8
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 9.7e-06 53.9 46 71.7


User provided reference genes

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