Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.2e-118 431.4 628 100.0
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.8e-104 383.6 665 92.5
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.8e-103 380.9 666 92.3
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 3.5e-102 376.7 666 91.9
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 5.0e-101 372.9 665 91.9
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 3.0e-90 337.0 630 92.5
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 1.8e-42 178.3 145 69.7
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 3.5e-38 164.1 610 29.3
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 1.9e-36 158.3 143 60.8
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 2.5e-36 157.9 137 62.8
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 3.3e-36 157.5 131 64.9
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 4.3e-36 157.1 146 62.3
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 4.3e-36 157.1 142 61.3
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 5.6e-36 156.8 142 60.6
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 2.1e-35 154.8 146 61.6
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 3.6e-35 154.1 143 58.7
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 3.6e-35 154.1 145 59.3
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 4.8e-35 153.7 142 59.9
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 4.8e-35 153.7 142 59.9
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 6.2e-35 153.3 143 60.8
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.4e-34 151.4 140 58.6
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 2.4e-34 151.4 140 58.6
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 2.4e-34 151.4 143 58.7
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 5.3e-34 150.2 135 60.0
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 5.3e-34 150.2 607 30.1
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.4e-33 147.5 133 62.4
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 7.6e-33 146.4 143 57.3
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 2.9e-32 144.4 134 59.0
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 4.9e-32 143.7 133 60.9
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 4.9e-32 143.7 143 58.0
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 8.4e-32 142.9 144 58.3
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 1.1e-31 142.5 142 57.7
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 4.2e-31 140.6 143 56.6
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 4.2e-31 140.6 128 61.7
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 7.1e-31 139.8 144 57.6
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 9.3e-31 139.4 144 54.2
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.6e-30 138.7 143 56.6
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 2.1e-30 138.3 134 59.0
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 1.0e-29 136.0 143 57.3
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 3.0e-29 134.4 133 58.6
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 3.0e-29 134.4 141 58.9
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.1e-28 132.5 144 54.9
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 3.3e-28 131.0 135 59.3
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 5.6e-28 130.2 142 54.9
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 5.6e-28 130.2 146 54.8
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 7.3e-28 129.8 149 53.0
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 1.6e-27 128.6 144 57.6
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 8.1e-27 126.3 129 58.9
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 1.8e-26 125.2 110 62.7
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 4.5e-25 120.6 145 49.0
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 4.5e-25 120.6 112 59.8
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 7.6e-25 119.8 104 63.5
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 9.9e-25 119.4 111 60.4
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 2.4e-23 114.8 104 59.6
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 7.1e-23 113.2 130 50.8
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 7.1e-23 113.2 141 53.2
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 1.6e-22 112.1 137 54.0
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 2.7e-22 111.3 130 49.2
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.5e-22 110.9 113 55.8
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 1.0e-21 109.4 116 52.6
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.3e-21 109.0 117 55.6
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 5.1e-21 107.1 145 48.3
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 1.9e-20 105.1 110 56.4
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 2.5e-20 104.8 112 56.2
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 3.3e-20 104.4 130 53.1
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 6.2e-19 100.1 86 64.0
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.4e-18 99.0 149 45.0
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 2.4e-18 98.2 87 59.8
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 3.1e-18 97.8 110 55.5
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 4.0e-18 97.4 105 55.2
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 4.0e-18 97.4 78 66.7
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 4.0e-18 97.4 110 53.6
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 9.0e-18 96.3 111 57.7
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.2e-17 95.9 86 61.6
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.5e-17 95.5 149 50.3
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 1.5e-17 95.5 104 51.9
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 3.4e-17 94.4 104 53.8
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 3.4e-17 94.4 103 52.4
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 5.8e-17 93.6 79 63.3
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 5.8e-17 93.6 79 63.3
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 5.8e-17 93.6 69 71.0
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.0e-16 92.8 139 47.5
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 2.2e-16 91.7 120 50.8
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 2.2e-16 91.7 128 46.9
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 2.2e-16 91.7 110 50.9
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.2e-16 91.7 145 43.4
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.9e-16 91.3 151 44.4
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 2.9e-16 91.3 109 50.5
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 8.4e-16 89.7 98 56.1
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 1.1e-15 89.4 83 60.2
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 1.1e-15 89.4 71 69.0
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 1.1e-15 89.4 112 52.7
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.9e-15 88.6 101 52.5
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 7.1e-15 86.7 71 66.2
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 1.6e-14 85.5 75 65.3
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 1.6e-14 85.5 126 46.0
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 2.1e-14 85.1 137 46.0
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 4.6e-14 84.0 75 64.0
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 4.6e-14 84.0 110 48.2
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 6.0e-14 83.6 129 41.9
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 6.0e-14 83.6 139 46.0
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 1.0e-13 82.8 116 50.9
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 1.3e-13 82.4 146 42.5
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 1.8e-13 82.0 114 45.6
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 2.3e-13 81.6 128 43.8
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 3.0e-13 81.3 109 46.8
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 3.0e-13 81.3 128 41.4
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 3.9e-13 80.9 95 51.6
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 5.1e-13 80.5 131 42.7
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 6.7e-13 80.1 75 61.3
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 1.1e-12 79.3 123 43.9
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 4.3e-12 77.4 106 46.2
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 5.7e-12 77.0 96 49.0
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 5.7e-12 77.0 90 45.6
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 1.3e-11 75.9 134 44.0
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 2.8e-11 74.7 122 41.8
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 4.8e-11 73.9 90 46.7
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 4.8e-11 73.9 127 44.9
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 6.2e-11 73.6 117 46.2
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 6.2e-11 73.6 94 47.9
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 1.4e-10 72.4 63 58.7
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.4e-10 72.4 71 54.9
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 1.8e-10 72.0 135 36.3
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 1.8e-10 72.0 66 57.6
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.8e-10 72.0 77 55.8
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.8e-10 72.0 92 45.7
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.4e-10 71.6 110 43.6
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 4.1e-10 70.9 103 41.7
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 9.0e-10 69.7 145 34.5
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.2e-09 69.3 66 56.1
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 1.2e-09 69.3 66 56.1
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 1.5e-09 68.9 93 48.4
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 2.6e-09 68.2 96 41.7
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.6e-09 68.2 68 55.9
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.6e-09 68.2 65 55.4
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 3.4e-09 67.8 116 42.2
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 4.5e-09 67.4 130 40.0
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 4.5e-09 67.4 104 43.3
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 4.5e-09 67.4 125 40.0
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 4.5e-09 67.4 100 46.0
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 7.6e-09 66.6 66 51.5
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.0e-08 66.2 135 35.6
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 1.0e-08 66.2 66 51.5
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 1.7e-08 65.5 95 42.1
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 2.9e-08 64.7 67 50.7
SGA_v2.0_scaffold58G20314 Striga asiatica HOM05D003937 ORTHO05D004583 6.5e-08 63.5 147 38.1
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 6.5e-08 63.5 69 50.7
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 8.4e-08 63.2 119 34.5
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.1e-07 62.8 94 42.6
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.1e-07 62.8 66 48.5
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 1.1e-07 62.8 119 38.7
CDE06G2177 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.5e-07 61.6 84 48.8
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 1.2e-06 59.3 144 35.4
AagrBONN_evm.TU.Sc2ySwM_117.297 Anthoceros agrestis HOM05D003937 ORTHO05D004583 1.6e-06 58.9 138 31.2
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 2.7e-06 58.2 67 49.3
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 4.6e-06 57.4 85 43.5
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 4.6e-06 57.4 131 34.4
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.1e-06 57.0 106 43.4
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 7.9e-06 56.6 108 43.5
SMO347G0358 Selaginella moellendorffii HOM05D003937 ORTHO05D004583 7.9e-06 56.6 113 36.3


User provided reference genes

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