Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 2646.7 1342 100.0
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2474.9 1322 95.4
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2376.7 1332 91.0
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2082.4 1325 81.1
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 2039.2 1345 78.3
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 1746.1 1336 68.7
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 1743.8 1335 69.1
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 1684.1 1348 67.1
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 1656.0 1356 65.6
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 1651.0 1338 65.8
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 1639.4 1334 65.8
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 1636.7 1342 65.4
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 1624.8 1339 65.5
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 1614.7 1410 62.5
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 1602.4 1342 65.1
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 1595.9 1340 63.8
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 1580.1 1370 63.0
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 1577.0 1338 64.4
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 1563.5 1350 62.1
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 1556.2 1340 63.0
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 1545.8 1352 62.1
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 1536.2 1351 61.7
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1533.5 1354 62.0
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1532.7 1351 61.9
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 1532.7 1336 62.4
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 1531.5 1409 59.8
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 1530.0 1335 61.7
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 1525.8 1339 62.1
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 1524.6 1340 62.1
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1520.0 1351 61.4
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 1511.9 1342 61.6
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 1510.4 1256 64.8
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 1509.2 1375 60.7
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 1505.7 1351 61.0
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 1497.6 1348 61.0
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 1495.7 1358 60.5
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 1490.3 1337 61.0
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1486.5 1342 60.8
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 1456.4 1336 60.3
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 1453.7 1375 59.2
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1449.1 1409 57.7
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 1448.0 1358 58.5
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1422.9 1341 58.7
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 1405.6 1353 57.4
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 1401.0 1408 56.9
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1391.3 1353 56.3
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1377.8 1208 61.7
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 1375.1 1358 56.4
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1372.1 1357 58.1
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1372.1 1357 56.2
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 1371.3 1340 56.1
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 1368.6 1362 55.9
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1366.3 1359 56.2
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1365.9 1405 55.8
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1359.4 1407 55.0
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 1355.9 1350 54.9
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 1342.4 1342 55.5
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 1336.2 1328 56.2
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 1336.2 1350 55.5
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1334.7 1329 57.1
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 1330.9 1329 56.0
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 1327.8 1363 55.6
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 1324.7 1375 54.8
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 1319.7 1331 54.5
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 1315.4 1350 53.8
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 1311.6 1347 54.2
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1308.9 1455 50.8
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 1308.1 1362 54.0
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 1305.4 1347 53.9
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 1302.7 1356 54.6
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1302.0 1354 53.8
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 1295.8 1323 54.6
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 1290.8 1346 54.5
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1290.0 1350 53.7
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 1276.9 1385 52.9
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 1275.4 1379 52.8
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1269.6 1347 53.3
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 1266.9 1340 53.4
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1248.4 1351 52.6
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 1239.2 1377 52.0
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 1232.2 1213 57.0
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 1227.6 1337 53.1
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1198.3 1350 51.9
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1198.0 1492 47.7
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 9.7e-304 1047.3 1332 47.7
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 2.3e-276 956.4 1007 55.4
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 4.8e-234 815.8 1346 40.6
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 4.3e-227 792.7 1527 36.5
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 6.9e-225 785.4 1254 41.0
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 7.9e-213 745.3 1365 36.6
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 1.1e-211 741.5 1565 34.3
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 2.8e-186 657.1 1517 33.6
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 6.5e-183 646.0 799 48.9
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 6.5e-167 592.8 652 52.8
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 7.8e-160 569.3 493 63.5
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 1.2e-152 545.4 617 51.9
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 2.8e-149 534.3 636 50.9
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 4.3e-142 510.4 457 62.1
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 2.1e-133 481.5 433 60.7
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 8.4e-130 469.5 1614 27.3
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 1.2e-88 332.8 496 44.8
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 1.1e-84 319.7 267 63.3
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 5.3e-68 264.2 365 43.0
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 3.6e-56 224.9 298 47.0
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 3.1e-52 211.8 124 83.9
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 2.9e-42 178.7 124 74.2
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 1.6e-40 172.9 244 42.2
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 7.5e-38 164.1 268 42.5
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 8.0e-32 144.1 121 61.2
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 5.4e-28 131.3 80 82.5
MD08G1109200 Malus domestica HOM05D006132 ORTHO05D007305 6.4e-21 107.8 71 73.2
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 9.2e-20 104.0 65 76.9
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 4.7e-16 91.7 122 53.3
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 6.2e-16 91.3 61 72.1
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 4.9e-13 81.6 58 70.7
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 8.4e-13 80.9 207 28.5
Phvul.003G090001 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 1.4e-12 80.1 119 42.9
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 5.1e-10 71.6 78 47.4
Psat3g171600 Pisum sativum HOM05D006132 ORTHO05D007305 1.5e-09 70.1 90 45.6
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 6.2e-08 64.7 71 53.5
Psat6g116480 Pisum sativum HOM05D006132 ORTHO05D007305 3.4e-06 58.9 58 50.0


User provided reference genes

Program Settings