Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 0.0e+00 1470.7 1004 100.0
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 0.0e+00 1404.8 1015 87.2
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 0.0e+00 1394.8 1010 96.1
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 0.0e+00 1390.2 1010 95.8
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 0.0e+00 1217.6 1021 82.4
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 0.0e+00 1096.3 1015 77.4
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 2.0e-309 1065.8 1009 77.8
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 3.4e-301 1038.5 1010 79.1
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 6.9e-262 907.9 1039 71.4
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 7.6e-253 877.9 1045 70.5
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 1.9e-251 873.2 1034 67.9
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.3e-249 867.1 1030 67.5
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 3.0e-249 865.9 1036 69.8
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 2.5e-248 862.8 1040 70.5
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 6.5e-244 848.2 1028 68.7
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 1.6e-242 843.6 1007 70.6
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 6.1e-242 841.6 1037 69.8
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 2.0e-237 826.6 1030 65.0
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 1.1e-235 820.8 1030 67.5
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 4.2e-235 818.9 1034 67.0
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 9.4e-235 817.8 1101 63.7
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 6.1e-234 815.1 1021 69.1
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 5.1e-233 812.0 1013 63.4
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 1.3e-231 807.4 1021 67.9
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 5.3e-230 802.0 889 71.8
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 3.4e-229 799.3 1023 67.7
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 1.6e-226 790.4 910 74.8
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 1.6e-226 790.4 1024 66.1
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 4.7e-226 788.9 1024 68.7
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.8e-225 786.9 1029 65.7
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.0e-224 783.5 1035 65.4
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 1.1e-222 777.7 912 73.6
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 9.1e-222 774.6 1029 65.0
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 4.5e-221 772.3 1011 67.7
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 7.7e-221 771.5 1071 59.9
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 7.7e-221 771.5 908 70.9
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.7e-218 763.1 916 65.1
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 3.0e-217 759.6 910 71.9
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 3.0e-217 759.6 866 76.4
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 6.7e-217 758.4 1025 61.9
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 6.7e-217 758.4 1001 66.6
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 8.2e-215 751.5 1006 67.0
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 1.2e-213 747.7 916 72.9
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 5.9e-213 745.3 913 73.2
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 3.8e-212 742.7 1005 65.2
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 8.5e-212 741.5 909 69.5
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.5e-211 740.7 890 73.8
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 3.2e-211 739.6 1027 59.2
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 3.2e-211 739.6 1026 65.2
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 3.2e-211 739.6 890 73.9
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.6e-210 737.3 893 72.1
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 6.1e-210 735.3 962 69.3
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 2.3e-209 733.4 1014 64.6
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 3.0e-209 733.0 875 71.9
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 5.2e-209 732.3 1022 65.4
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 8.8e-209 731.5 918 66.3
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 1.5e-208 730.7 922 69.3
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 2.0e-208 730.3 1005 66.4
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 2.6e-208 729.9 868 73.6
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 2.6e-208 729.9 1001 56.7
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 2.8e-207 726.5 1025 63.1
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 6.3e-207 725.3 816 77.0
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 5.4e-206 722.2 968 67.7
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 7.0e-206 721.8 929 70.2
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 2.7e-205 719.9 831 76.7
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 3.5e-205 719.5 1017 64.3
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 6.5e-204 715.3 1070 62.9
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 6.5e-204 715.3 1017 62.2
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 2.5e-203 713.4 1016 62.1
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 9.4e-203 711.4 906 69.0
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 6.1e-202 708.8 1021 61.5
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 1.0e-201 708.0 1001 57.3
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 1.8e-201 707.2 1012 62.7
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 4.0e-201 706.1 912 68.3
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 6.8e-201 705.3 906 70.9
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 2.2e-199 700.3 889 70.0
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 3.7e-199 699.5 1005 62.7
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 3.7e-199 699.5 893 69.9
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 8.3e-199 698.4 895 69.1
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 9.2e-198 694.9 897 70.3
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 1.2e-197 694.5 1020 62.4
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 5.9e-197 692.2 894 70.9
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 5.0e-196 689.1 923 67.8
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 6.6e-196 688.7 886 70.1
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 1.9e-195 687.2 1018 62.1
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 7.3e-195 685.3 873 69.2
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 6.1e-194 682.2 1006 62.3
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 1.4e-193 681.0 902 60.9
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 2.3e-193 680.2 1021 62.1
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 2.0e-192 677.2 867 67.9
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 7.5e-192 675.2 1002 62.3
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 2.2e-191 673.7 1005 60.7
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 3.2e-190 669.8 890 66.4
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 4.6e-189 666.0 845 69.6
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.0e-188 664.8 890 68.9
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.3e-188 664.5 972 61.2
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 3.9e-188 662.9 1034 57.6
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 6.6e-188 662.1 894 65.2
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 1.1e-187 661.4 948 64.0
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 2.5e-187 660.2 918 65.6
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 2.5e-187 660.2 1005 59.1
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 4.3e-187 659.4 953 63.7
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 1.6e-186 657.5 918 65.5
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 2.8e-186 656.8 1023 60.0
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 3.6e-186 656.4 1013 60.8
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 1.8e-185 654.1 1014 62.8
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 4.0e-185 652.9 914 64.2
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.5e-184 651.0 881 68.8
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 2.6e-184 650.2 900 67.7
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 7.5e-184 648.7 1019 60.3
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 2.9e-183 646.7 898 66.4
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 6.4e-183 645.6 873 68.2
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 6.4e-183 645.6 873 70.2
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 1.2e-181 641.3 904 60.1
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 2.0e-181 640.6 1006 61.4
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 2.7e-181 640.2 1023 59.9
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 4.7e-178 629.4 807 70.1
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 8.3e-175 618.6 906 61.1
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 3.3e-171 606.7 881 53.6
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 2.6e-168 597.0 890 58.4
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 1.3e-167 594.7 901 58.5
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 1.3e-167 594.7 819 67.5
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 1.1e-166 591.7 819 67.2
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 7.1e-166 589.0 890 57.9
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 7.1e-166 589.0 890 57.9
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 9.2e-166 588.6 793 66.7
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 1.2e-165 588.2 958 54.1
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 3.5e-165 586.6 804 63.1
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.8e-161 574.3 897 61.9
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 6.4e-159 565.8 1017 52.7
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 1.3e-156 558.1 915 56.7
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 3.9e-156 556.6 815 68.5
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 1.6e-149 534.6 905 55.1
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 3.5e-149 533.5 905 55.4
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 2.3e-148 530.8 890 56.4
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 5.1e-148 529.6 888 60.8
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.1e-147 528.5 741 62.3
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 3.3e-147 526.9 685 74.2
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 1.4e-145 521.5 915 55.0
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 7.6e-144 515.8 686 67.5
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 1.0e-135 488.8 807 61.5
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 1.9e-134 484.6 984 51.4
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 3.4e-128 463.8 716 61.7
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 8.5e-127 459.1 792 49.0
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 4.2e-126 456.8 930 50.0
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 4.8e-122 443.4 652 74.4
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 4.5e-120 436.8 858 56.4
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.9e-119 434.1 923 45.3
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.4e-116 425.2 673 59.9
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 1.8e-116 424.9 800 53.2
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.1e-110 405.6 989 44.3
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 1.7e-106 391.7 897 36.5
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 3.6e-101 374.0 409 63.8
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.5e-99 368.6 395 62.8
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.6e-96 358.6 645 70.2
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 4.0e-92 344.0 962 46.2
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 6.3e-90 336.7 745 50.5
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 6.3e-90 336.7 505 48.5
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 2.7e-88 331.3 1339 29.9
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 4.7e-85 320.5 647 58.6
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 2.2e-82 311.6 479 49.1
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 5.4e-81 307.0 665 58.0
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 4.4e-67 260.8 271 63.8
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 5.0e-63 247.3 298 82.9
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 9.2e-57 226.5 138 81.2
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 6.6e-55 220.3 229 51.5
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.9e-50 204.1 285 44.2
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 3.3e-46 191.4 331 39.9
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 3.1e-36 158.3 124 67.7
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 6.2e-29 134.0 86 76.7
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 4.0e-28 131.3 73 87.7
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 4.2e-25 121.3 119 58.0
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 6.9e-20 104.0 66 78.8
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 2.8e-13 82.0 192 34.9
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 3.1e-12 78.6 62 58.1
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 6.5e-10 70.9 136 69.1
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 3.0e-07 62.0 355 29.9
Sc09g0009810 Simmondsia chinensis HOM05D003722 ORTHO05D004589 7.4e-06 57.4 67 49.3


User provided reference genes

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