Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G3121 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.2e-46 189.5 93 100.0
FAN23G1905 Fragaria x ananassa HOM05D007420 ORTHO05D009353 6.4e-29 130.6 68 94.1
FAN26G1322 Fragaria x ananassa HOM05D007420 ORTHO05D009353 6.4e-29 130.6 68 94.1
FAN28G1248 Fragaria x ananassa HOM05D007420 ORTHO05D009353 6.4e-29 130.6 68 94.1
FAN22G2307 Fragaria x ananassa HOM05D022909 ORTHO05D009353 2.4e-28 128.6 68 92.6
FvH4_1g03930 Fragaria vesca HOM05D007420 ORTHO05D009353 9.5e-25 116.7 60 98.3
RcHm_v2.0_Chr2g0089401 Rosa chinensis HOM05D007420 ORTHO05D009353 1.9e-20 102.4 64 79.7
MD02G1037600 Malus domestica HOM05D007420 ORTHO05D009353 4.6e-19 97.8 63 76.2
Glyma.05G010400 Glycine max HOM05D007420 ORTHO05D009353 6.0e-19 97.4 91 56.0
Lj4g0001906 Lotus japonicus HOM05D007420 ORTHO05D009353 1.0e-18 96.7 66 71.2
Actinidia22015 Actinidia chinensis HOM05D007420 ORTHO05D009353 2.3e-18 95.5 63 74.6
SalBow6G6280 Salvia bowleyana HOM05D007420 ORTHO05D009353 3.0e-18 95.1 59 74.6
Cfa003340 Carpinus fangiana HOM05D007420 ORTHO05D009353 3.9e-18 94.7 62 71.0
Eucgr.C01298 Eucalyptus grandis HOM05D007420 ORTHO05D009353 3.9e-18 94.7 62 72.6
DCAR_014860 Daucus carota HOM05D007420 ORTHO05D009353 5.1e-18 94.4 65 69.2
TPR.G9078 Trifolium pratense HOM05D007420 ORTHO05D009353 6.6e-18 94.0 62 71.0
Dinv36572 Davidia involucrata HOM05D007420 ORTHO05D009353 8.6e-18 93.6 62 71.0
arahy.Tifrunner.gnm1.ann1.QR7ILI Arachis hypogaea HOM05D007420 ORTHO05D009353 1.1e-17 93.2 62 71.0
Ciclev10009973m.g Citrus clementina HOM05D007420 ORTHO05D009353 1.5e-17 92.8 90 57.8
Eucgr.L02717 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.5e-17 92.8 62 71.0
arahy.Tifrunner.gnm1.ann1.XPL4AE Arachis hypogaea HOM05D007420 ORTHO05D009353 4.3e-17 91.3 62 69.4
Thecc.09G120400 Theobroma cacao HOM05D007420 ORTHO05D009353 9.6e-17 90.1 57 71.9
Gorai.010G066200 Gossypium raimondii HOM05D007420 ORTHO05D009353 1.2e-16 89.7 57 71.9
Oeu021594.1 Olea europaea HOM05D007420 ORTHO05D009353 1.2e-16 89.7 63 69.8
Prupe.7G237700 Prunus persica HOM05D007420 ORTHO05D009353 1.2e-16 89.7 59 74.6
Cc06_g08970 Coffea canephora HOM05D007420 ORTHO05D009353 1.6e-16 89.4 57 75.4
MD15G1177800 Malus domestica HOM05D007420 ORTHO05D009353 1.6e-16 89.4 64 68.8
Nitab4.5_0000750g0050 Nicotiana tabacum HOM05D007420 ORTHO05D009353 1.6e-16 89.4 57 73.7
CANSAT56G4260 Cannabis sativa HOM05D007420 ORTHO05D009353 2.1e-16 89.0 59 74.6
QL02p087339 Quercus lobata HOM05D007420 ORTHO05D009353 2.1e-16 89.0 59 74.6
Haze_25622 Corylus avellana HOM05D007420 ORTHO05D009353 3.6e-16 88.2 60 70.0
Eucgr.C01288 Eucalyptus grandis HOM05D007420 ORTHO05D009353 3.6e-16 88.2 59 71.2
vmacro20648 Vaccinium macrocarpon HOM05D007420 ORTHO05D009353 3.6e-16 88.2 60 71.7
Sabra11G0015300 Salix brachista HOM05D007420 ORTHO05D009353 4.7e-16 87.8 56 75.0
CiPaw.03G239800 Carya illinoinensis HOM05D007420 ORTHO05D009353 6.2e-16 87.4 60 71.7
Eucgr.C01109 Eucalyptus grandis HOM05D007420 ORTHO05D009353 6.2e-16 87.4 59 71.2
MELO3C004528.2 Cucumis melo HOM05D007420 ORTHO05D009353 8.1e-16 87.0 54 77.8
Manes.06G052500 Manihot esculenta HOM05D007420 ORTHO05D009353 8.1e-16 87.0 63 65.1
Migut.L01525 Erythranthe guttata HOM05D007420 ORTHO05D009353 1.1e-15 86.7 53 81.1
Hma1.2p1_0018F.1_g012820 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 1.4e-15 86.3 60 68.3
Lalb_Chr13g0302091 Lupinus albus HOM05D007420 ORTHO05D009353 1.4e-15 86.3 67 62.7
SEGI_24866 Sequoiadendron giganteum HOM05D007420 ORTHO05D009353 1.4e-15 86.3 76 53.9
Atru.chr7.1239 Acer truncatum HOM05D007420 ORTHO05D009353 1.8e-15 85.9 60 70.0
CSS0016223 Camellia sinensis var. sinensis HOM05D007420 ORTHO05D009353 1.8e-15 85.9 59 72.9
Nitab4.5_0001193g0010 Nicotiana tabacum HOM05D007420 ORTHO05D009353 1.8e-15 85.9 55 72.7
Potri.011G024500 Populus trichocarpa HOM05D007420 ORTHO05D009353 1.8e-15 85.9 56 73.2
CDE01G0426 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 2.4e-15 85.5 64 64.1
A07p31870 Brassica napus HOM05D007420 ORTHO05D009353 4.0e-15 84.7 57 71.9
HPP92_024085 Vanilla planifolia HOM05D007420 ORTHO05D009353 4.0e-15 84.7 64 64.1
Psat4g040560 Pisum sativum HOM05D007420 ORTHO05D009353 6.8e-15 84.0 62 67.7
Gohir.A06G058200 Gossypium hirsutum HOM05D007420 ORTHO05D009353 8.9e-15 83.6 54 72.2
Gohir.D06G056500 Gossypium hirsutum HOM05D007420 ORTHO05D009353 8.9e-15 83.6 54 72.2
Phvul.003G161000 Phaseolus vulgaris HOM05D007420 ORTHO05D009353 1.2e-14 83.2 59 67.8
TWI32G1185 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 1.2e-14 83.2 56 67.9
Aa31sc12G90 Aethionema arabicum HOM05D007420 ORTHO05D009353 1.5e-14 82.8 58 65.5
SalBow1G2150 Salvia bowleyana HOM05D007420 ORTHO05D009353 1.5e-14 82.8 54 75.9
TWI34G1269 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 1.5e-14 82.8 56 66.1
Nn2g11931 Nelumbo nucifera HOM05D007420 ORTHO05D009353 2.0e-14 82.4 56 73.2
Sed0006703 Sechium edule HOM05D007420 ORTHO05D009353 2.6e-14 82.0 57 71.9
CDE03G0079 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 3.4e-14 81.6 64 60.9
Nn8g39361 Nelumbo nucifera HOM05D007420 ORTHO05D009353 3.4e-14 81.6 64 60.9
PGR102G0502 Punica granatum HOM05D007420 ORTHO05D009353 3.4e-14 81.6 63 60.3
unitig_85.g27256 Utricularia gibba HOM05D000953 ORTHO05D000231 3.4e-14 81.6 55 70.9
CsaV3_2G002630 Cucumis sativus L. HOM05D007420 ORTHO05D009353 4.4e-14 81.3 52 76.9
BcaB03g15440 Brassica carinata HOM05D007420 ORTHO05D009353 5.8e-14 80.9 55 72.7
BcaC08g45947 Brassica carinata HOM05D007420 ORTHO05D009353 5.8e-14 80.9 55 72.7
C06p37440 Brassica napus HOM05D007420 ORTHO05D032647 5.8e-14 80.9 55 72.7
BolC6t38847H Brassica oleracea HOM05D007420 ORTHO05D009353 5.8e-14 80.9 55 72.7
CAN.G1424.4 Capsicum annuum HOM05D007420 ORTHO05D009353 5.8e-14 80.9 53 73.6
HanXRQChr03g0062071 Helianthus annuus HOM05D007420 ORTHO05D009353 7.6e-14 80.5 53 71.7
PSO170G5167 Papaver somniferum HOM05D007420 ORTHO05D009353 7.6e-14 80.5 52 75.0
ClCG11G002810 Citrullus lanatus HOM05D007420 ORTHO05D009353 9.9e-14 80.1 57 71.9
ECA240G1805 Erigeron canadensis HOM05D007420 ORTHO05D009353 9.9e-14 80.1 53 71.7
SHI28897 Sapria himalayana HOM05D007420 ORTHO05D009353 1.3e-13 79.7 55 67.3
EL10Ac8g18588 Beta vulgaris HOM05D007420 ORTHO05D009353 1.7e-13 79.3 65 60.0
BraA07t30816Z Brassica rapa HOM05D007420 ORTHO05D009353 1.7e-13 79.3 55 70.9
Thhalv10019233m.g Eutrema salsugineum HOM05D007420 ORTHO05D009353 1.7e-13 79.3 55 70.9
Peaxi162Scf00361g00611 Petunia axillaris HOM05D007420 ORTHO05D009353 1.7e-13 79.3 53 71.7
Solyc07g005430.3 Solanum lycopersicum HOM05D007420 ORTHO05D009353 1.7e-13 79.3 53 71.7
Sopen07g001360 Solanum pennellii HOM05D007420 ORTHO05D009353 1.7e-13 79.3 53 71.7
Carub.0002s1522 Capsella rubella HOM05D007420 ORTHO05D009353 2.2e-13 79.0 55 69.1
Hma1.2p1_0018F.1_g012830 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 2.9e-13 78.6 57 66.7
THA.LOC104809007 Tarenaya hassleriana HOM05D007420 ORTHO05D009353 3.8e-13 78.2 53 67.9
AL2G27600 Arabidopsis lyrata HOM05D007420 ORTHO05D009353 4.9e-13 77.8 55 69.1
BcaB03g15439 Brassica carinata HOM05D007420 ORTHO05D009353 4.9e-13 77.8 54 70.4
Duzib150G1214 Durio zibethinus HOM05D007420 ORTHO05D009353 4.9e-13 77.8 53 67.9
Sp5g23780 Schrenkiella parvula HOM05D007420 ORTHO05D009353 4.9e-13 77.8 55 69.1
Hund09157 Selenicereus undatus HOM05D007420 ORTHO05D009353 8.4e-13 77.0 53 71.7
CARHR061490 Cardamine hirsuta HOM05D007420 ORTHO05D009353 1.1e-12 76.6 55 67.3
AT1G68680 Arabidopsis thaliana HOM05D007420 ORTHO05D009353 1.4e-12 76.3 55 67.3
Sc14g0000270 Simmondsia chinensis HOM05D007420 ORTHO05D009353 2.4e-12 75.5 57 64.9
Pp3c11_6600 Physcomitrium patens HOM05D007420 ORTHO05D009353 3.2e-12 75.1 57 63.2
AUR62033448 Chenopodium quinoa HOM05D007420 ORTHO05D009353 5.4e-12 74.3 54 64.8
GSVIVG01015481001 Vitis vinifera HOM05D007420 ORTHO05D009353 7.1e-12 73.9 53 64.2
PGSC0003DMG401011174 Solanum tuberosum HOM05D007420 ORTHO05D009353 1.6e-11 72.8 74 52.7
Zm00001eb283090 Zea mays HOM05D007420 ORTHO05D009353 1.6e-11 72.8 69 52.2
AagrBONN_evm.TU.Sc2ySwM_362.2614 Anthoceros agrestis HOM05D007420 ORTHO05D009353 1.0e-10 70.1 61 55.7
Os05g0176600 Oryza sativa ssp. japonica HOM05D007420 ORTHO05D009353 1.3e-10 69.7 43 81.4
Mapoly0048s0106 Marchantia polymorpha HOM05D007420 ORTHO05D009353 1.7e-10 69.3 53 62.3
CBR_g3296 Chara braunii HOM05D007420 ORTHO05D009353 3.6e-08 61.6 54 53.7
Eucgr.C01292 Eucalyptus grandis HOM05D007420 ORTHO05D009353 2.6e-06 55.5 33 75.8
MBI01_g34140_MAGBIO Magnolia biondii HOM05D007420 ORTHO05D009353 7.6e-06 53.9 65 46.2
MCO15G341 Micromonas commoda HOM05D007420 ORTHO05D009353 9.9e-06 53.5 52 51.9


User provided reference genes

Program Settings