Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G3111 Fragaria x ananassa HOM05D003313 ORTHO05D015668 5.6e-46 187.2 91 100.0
FvH4_1g29860 Fragaria vesca HOM05D003313 ORTHO05D015668 2.0e-35 152.1 86 86.0
FAN15G1318 Fragaria x ananassa HOM05D003313 ORTHO05D015668 6.2e-29 130.6 77 83.1
FAN02G4136 Fragaria x ananassa HOM05D003313 ORTHO05D015668 1.2e-27 126.3 78 80.8
FAN07G0876 Fragaria x ananassa HOM05D003313 ORTHO05D015668 4.5e-27 124.4 78 79.5
FAN21G1344 Fragaria x ananassa HOM05D003313 ORTHO05D015668 1.1e-25 119.8 73 79.5
FAN15G2142 Fragaria x ananassa HOM05D003313 ORTHO05D015668 1.9e-25 119.0 78 76.9
FAN10G1842 Fragaria x ananassa HOM05D003313 ORTHO05D015668 1.3e-23 112.8 73 75.3
BcaC04g23548 Brassica carinata HOM05D003313 ORTHO05D004217 2.3e-15 85.5 58 70.7
BcaNung01252 Brassica carinata HOM05D003313 ORTHO05D004217 2.3e-15 85.5 58 70.7
BcaNung07352 Brassica carinata HOM05D003313 ORTHO05D004217 2.3e-15 85.5 58 70.7
A06p35540 Brassica napus HOM05D003313 ORTHO05D004217 2.3e-15 85.5 58 70.7
A09p06410 Brassica napus HOM05D003313 ORTHO05D004217 2.3e-15 85.5 58 70.7
C07p43000 Brassica napus HOM05D003313 ORTHO05D004217 2.3e-15 85.5 58 70.7
C09p07140 Brassica napus HOM05D003313 ORTHO05D004217 2.3e-15 85.5 58 70.7
BolC7t44829H Brassica oleracea HOM05D003313 ORTHO05D004217 2.3e-15 85.5 58 70.7
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 2.3e-15 85.5 58 70.7
BraA06t26479Z Brassica rapa HOM05D003313 ORTHO05D004217 2.3e-15 85.5 58 70.7
BraA09t36285Z Brassica rapa HOM05D003313 ORTHO05D004217 2.3e-15 85.5 58 70.7
Cc02_g36830 Coffea canephora HOM05D003313 ORTHO05D004217 3.9e-15 84.7 58 72.4
MD05G1154700 Malus domestica HOM05D003313 ORTHO05D004217 3.9e-15 84.7 58 70.7
Aa31LG11G3950 Aethionema arabicum HOM05D003313 ORTHO05D004217 5.1e-15 84.3 58 69.0
CARHR188770 Cardamine hirsuta HOM05D003313 ORTHO05D004217 5.1e-15 84.3 58 69.0
Thhalv10003520m.g Eutrema salsugineum HOM05D003313 ORTHO05D004217 5.1e-15 84.3 58 69.0
FvH4_2g17560 Fragaria vesca HOM05D003313 ORTHO05D004217 5.1e-15 84.3 58 72.4
FAN15G1274 Fragaria x ananassa HOM05D003313 ORTHO05D004217 5.1e-15 84.3 58 72.4
FAN24G1237 Fragaria x ananassa HOM05D003313 ORTHO05D004217 5.1e-15 84.3 58 72.4
FAN27G0645 Fragaria x ananassa HOM05D003313 ORTHO05D004217 5.1e-15 84.3 58 72.4
FAN27G0740 Fragaria x ananassa HOM05D003313 ORTHO05D004217 5.1e-15 84.3 58 72.4
RcHm_v2.0_Chr6g0282501 Rosa chinensis HOM05D003313 ORTHO05D004217 5.1e-15 84.3 58 72.4
Sp2g22700 Schrenkiella parvula HOM05D003313 ORTHO05D004217 5.1e-15 84.3 58 69.0
Prupe.8G187800 Prunus persica HOM05D003313 ORTHO05D004217 6.7e-15 84.0 58 70.7
TWI38G1822 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 6.7e-15 84.0 58 69.0
TWI39G0913 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 8.8e-15 83.6 58 69.0
AL6G36310 Arabidopsis lyrata HOM05D003313 ORTHO05D004217 1.1e-14 83.2 58 67.2
AT5G24710 Arabidopsis thaliana HOM05D003313 ORTHO05D004217 1.1e-14 83.2 58 67.2
Carub.0006s2256 Capsella rubella HOM05D003313 ORTHO05D004217 1.1e-14 83.2 58 67.2
Dinv30970 Davidia involucrata HOM05D003313 ORTHO05D004217 1.5e-14 82.8 58 69.0
Eucgr.B01361 Eucalyptus grandis HOM05D003313 ORTHO05D004217 1.5e-14 82.8 58 70.7
ATR0620G123 Amborella trichopoda HOM05D003313 ORTHO05D004217 1.9e-14 82.4 54 70.4
Lsat_1_v5_gn_7_68120 Lactuca sativa HOM05D003313 ORTHO05D004217 1.9e-14 82.4 51 74.5
FAN05G0528 Fragaria x ananassa HOM05D003313 ORTHO05D015668 2.5e-14 82.0 66 63.6
HanXRQChr15g0468281 Helianthus annuus HOM05D003313 ORTHO05D004217 2.5e-14 82.0 51 74.5
Potri.006G081800 Populus trichocarpa HOM05D003313 ORTHO05D004217 2.5e-14 82.0 58 67.2
Sabra06G0061800 Salix brachista HOM05D003313 ORTHO05D004217 2.5e-14 82.0 58 67.2
TAR624G0023 Trochodendron aralioides HOM05D003313 ORTHO05D004217 2.5e-14 82.0 53 71.7
TAR624G1107 Trochodendron aralioides HOM05D003313 ORTHO05D004217 2.5e-14 82.0 53 71.7
HPP92_021469 Vanilla planifolia HOM05D003313 ORTHO05D004217 2.5e-14 82.0 58 65.5
VMungo1383G1216 Vigna mungo HOM05D003313 ORTHO05D004217 2.5e-14 82.0 51 72.5
Actinidia11708 Actinidia chinensis HOM05D003313 ORTHO05D004217 3.3e-14 81.6 58 67.2
CSS0016348 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 3.3e-14 81.6 58 67.2
CSS0044155 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 3.3e-14 81.6 58 67.2
Lj9C240T5 Lonicera japonica HOM05D003313 ORTHO05D004217 3.3e-14 81.6 50 74.0
Phvul.001G220300 Phaseolus vulgaris HOM05D003313 ORTHO05D004217 3.3e-14 81.6 51 72.5
Rhsim11G0111700 Rhododendron simsii HOM05D003313 ORTHO05D004217 3.3e-14 81.6 58 67.2
SGA_v2.0_scaffold311G48230 Striga asiatica HOM05D003313 ORTHO05D004217 3.3e-14 81.6 62 66.1
TPR.G8371 Trifolium pratense HOM05D003313 ORTHO05D004217 3.3e-14 81.6 50 74.0
vmacro01644 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 3.3e-14 81.6 58 67.2
GSVIVG01029823001 Vitis vinifera HOM05D003313 ORTHO05D004217 3.3e-14 81.6 53 71.7
ClCG09G008380 Citrullus lanatus HOM05D003313 ORTHO05D004217 4.3e-14 81.3 58 67.2
Sed0021054 Sechium edule HOM05D003313 ORTHO05D004217 4.3e-14 81.3 58 67.2
unitig_699.g19829 Utricularia gibba HOM05D003313 ORTHO05D004217 4.3e-14 81.3 62 64.5
Actinidia17722 Actinidia chinensis HOM05D003313 ORTHO05D004217 5.7e-14 80.9 51 72.5
MSTRG.27897 Avicennia marina HOM05D003313 ORTHO05D004217 5.7e-14 80.9 62 64.5
CDE09G0721 Ceratophyllum demersum HOM05D003313 ORTHO05D004217 5.7e-14 80.9 58 65.5
Gohir.A08G082000 Gossypium hirsutum HOM05D003313 ORTHO05D004217 5.7e-14 80.9 54 70.4
Peaxi162Scf00194g00629 Petunia axillaris HOM05D003313 ORTHO05D004217 5.7e-14 80.9 58 65.5
CAN.G1379.33 Capsicum annuum HOM05D003313 ORTHO05D004217 7.4e-14 80.5 58 65.5
COL.COLO4_07112 Corchorus olitorius HOM05D003313 ORTHO05D004217 7.4e-14 80.5 58 67.2
Solyc01g102510.4 Solanum lycopersicum HOM05D003313 ORTHO05D004217 7.4e-14 80.5 58 65.5
Sopen01g044950 Solanum pennellii HOM05D003313 ORTHO05D004217 7.4e-14 80.5 58 65.5
PGSC0003DMG400018227 Solanum tuberosum HOM05D003313 ORTHO05D004217 7.4e-14 80.5 58 65.5
Thecc.09G202800 Theobroma cacao HOM05D003313 ORTHO05D004217 7.4e-14 80.5 58 67.2
Atru.chr3.2031 Acer truncatum HOM05D003313 ORTHO05D004217 9.7e-14 80.1 58 65.5
CSS0008361 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 9.7e-14 80.1 51 72.5
CSS0011425 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 9.7e-14 80.1 51 72.5
ECA240G0535 Erigeron canadensis HOM05D003313 ORTHO05D004217 9.7e-14 80.1 51 70.6
Lj1g0026129 Lotus japonicus HOM05D003313 ORTHO05D004217 9.7e-14 80.1 51 70.6
Nn3g20244 Nelumbo nucifera HOM05D003313 ORTHO05D004217 9.7e-14 80.1 51 72.5
Os01g0653800 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 9.7e-14 80.1 58 65.5
THA.LOC104814960 Tarenaya hassleriana HOM05D003313 ORTHO05D004217 9.7e-14 80.1 51 72.5
CANSAT01G1610 Cannabis sativa HOM05D003313 ORTHO05D004217 1.3e-13 79.7 51 72.5
Cfa004406 Carpinus fangiana HOM05D003313 ORTHO05D004217 1.3e-13 79.7 58 65.5
Ca_09260_v3 Cicer arietinum L. HOM05D003313 ORTHO05D004217 1.3e-13 79.7 50 72.0
Haze_14998 Corylus avellana HOM05D003313 ORTHO05D004217 1.3e-13 79.7 58 65.5
Duzib150G0949 Durio zibethinus HOM05D003313 ORTHO05D004217 1.3e-13 79.7 58 65.5
Glyma.19G223400 Glycine max HOM05D003313 ORTHO05D004217 1.3e-13 79.7 50 72.0
MD10G1148800 Malus domestica HOM05D003313 ORTHO05D004217 1.3e-13 79.7 50 74.0
Manes.11G105500 Manihot esculenta HOM05D003313 ORTHO05D004217 1.3e-13 79.7 51 72.5
Medtr7g111080 Medicago truncatula HOM05D003313 ORTHO05D004217 1.3e-13 79.7 50 72.0
QL11p018449 Quercus lobata HOM05D003313 ORTHO05D004217 1.3e-13 79.7 51 72.5
Zm00001eb158110 Zea mays HOM05D003313 ORTHO05D004217 1.3e-13 79.7 57 66.7
Zm00001eb359400 Zea mays HOM05D003313 ORTHO05D004217 1.3e-13 79.7 57 66.7
Ciclev10018511m.g Citrus clementina HOM05D003313 ORTHO05D004217 1.7e-13 79.3 51 70.6
MELO3C021123.2 Cucumis melo HOM05D003313 ORTHO05D004217 1.7e-13 79.3 58 65.5
CsaV3_7G026710 Cucumis sativus L. HOM05D003313 ORTHO05D004217 1.7e-13 79.3 58 65.5
Migut.B00692 Erythranthe guttata HOM05D003313 ORTHO05D004217 1.7e-13 79.3 58 69.0
Gohir.D08G091400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.7e-13 79.3 53 69.8
Gorai.004G096900 Gossypium raimondii HOM05D003313 ORTHO05D004217 1.7e-13 79.3 53 69.8
Nitab4.5_0000399g0070 Nicotiana tabacum HOM05D003313 ORTHO05D004217 1.7e-13 79.3 58 65.5
Nitab4.5_0004090g0090 Nicotiana tabacum HOM05D003313 ORTHO05D004217 1.7e-13 79.3 58 65.5
Psat3g015640 Pisum sativum HOM05D003313 ORTHO05D004217 2.2e-13 79.0 50 70.0
MBI07_g10943_MAGBIO Magnolia biondii HOM05D003313 ORTHO05D004217 2.8e-13 78.6 58 63.8
PSO541G4460 Papaver somniferum HOM05D003313 ORTHO05D004217 2.8e-13 78.6 54 66.7
PSO675G1011 Papaver somniferum HOM05D003313 ORTHO05D004217 2.8e-13 78.6 54 66.7
DCAR_029312 Daucus carota HOM05D003313 ORTHO05D004217 3.7e-13 78.2 50 72.0
DCAR_029313 Daucus carota HOM05D003313 ORTHO05D004217 3.7e-13 78.2 50 72.0
DCAR_029787 Daucus carota HOM05D003313 ORTHO05D004217 3.7e-13 78.2 50 72.0
DCAR_032260 Daucus carota HOM05D003313 ORTHO05D004217 3.7e-13 78.2 50 72.0
Glyma.03G226400 Glycine max HOM05D003313 ORTHO05D004217 3.7e-13 78.2 50 70.0
Lj5C312G5 Lonicera japonica HOM05D003313 ORTHO05D004217 3.7e-13 78.2 58 63.8
Oeu016865.1 Olea europaea HOM05D003313 ORTHO05D004217 3.7e-13 78.2 58 65.5
Peaxi162Scf00071g00133 Petunia axillaris HOM05D003313 ORTHO05D004217 3.7e-13 78.2 58 63.8
Hund24556 Selenicereus undatus HOM05D003313 ORTHO05D004217 3.7e-13 78.2 58 63.8
AUR62018429 Chenopodium quinoa HOM05D003313 ORTHO05D004217 4.8e-13 77.8 51 70.6
AUR62021005 Chenopodium quinoa HOM05D003313 ORTHO05D004217 4.8e-13 77.8 51 70.6
SalBow4G0229 Salvia bowleyana HOM05D003313 ORTHO05D004217 4.8e-13 77.8 51 70.6
SalBow4G1329 Salvia bowleyana HOM05D003313 ORTHO05D004217 4.8e-13 77.8 51 70.6
arahy.Tifrunner.gnm1.ann1.9JB77L Arachis hypogaea HOM05D003313 ORTHO05D004217 8.2e-13 77.0 50 70.0
arahy.Tifrunner.gnm1.ann1.XWZQ7T Arachis hypogaea HOM05D003313 ORTHO05D004217 8.2e-13 77.0 50 70.0
SEGI_06427 Sequoiadendron giganteum HOM05D003313 ORTHO05D004217 8.2e-13 77.0 51 70.6
Sc10g0005440 Simmondsia chinensis HOM05D003313 ORTHO05D004217 1.4e-12 76.3 58 62.1
Sc10g0006280 Simmondsia chinensis HOM05D003313 ORTHO05D004217 1.4e-12 76.3 58 62.1
Gohir.A08G016300 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.8e-12 75.9 53 66.0
Gohir.D08G026400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.8e-12 75.9 53 66.0
Gorai.004G022900 Gossypium raimondii HOM05D003313 ORTHO05D004217 1.8e-12 75.9 53 66.0
CiPaw.01G000400 Carya illinoinensis HOM05D003313 ORTHO05D004217 2.4e-12 75.5 58 63.8
Lalb_Chr15g0077831 Lupinus albus HOM05D003313 ORTHO05D004217 2.4e-12 75.5 53 66.0
Ah.13g077320 Amaranthus hybridus HOM05D003313 ORTHO05D004217 3.1e-12 75.1 51 66.7
EL10Ac3g07331 Beta vulgaris HOM05D003313 ORTHO05D004217 3.1e-12 75.1 51 66.7
Aqoxy1G01346 Aquilegia oxysepala HOM05D003313 ORTHO05D004217 4.1e-12 74.7 54 64.8
Lalb_Chr18g0046271 Lupinus albus HOM05D003313 ORTHO05D004217 5.3e-12 74.3 53 64.2
SMO116G0300 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 6.9e-12 73.9 51 64.7
Hund19080 Selenicereus undatus HOM05D003313 ORTHO05D004217 1.0e-10 70.1 51 64.7
FAN15G0416 Fragaria x ananassa HOM05D020189 ORTHO05D015668 1.7e-10 69.3 43 79.1
Mapoly0031s0124 Marchantia polymorpha HOM05D003313 ORTHO05D004217 1.4e-09 66.2 51 58.8
Pp3c1_36370 Physcomitrium patens HOM05D003313 ORTHO05D004217 1.9e-09 65.9 50 62.0
AagrBONN_evm.TU.Sc2ySwM_228.3123 Anthoceros agrestis HOM05D003313 ORTHO05D004217 1.2e-08 63.2 49 55.1
CBR_g3034 Chara braunii HOM05D003313 ORTHO05D004217 1.6e-08 62.8 47 59.6
CBR_g53818 Chara braunii HOM05D003313 ORTHO05D004217 6.1e-08 60.8 47 57.4
ATR0620G069 Amborella trichopoda HOM05D003313 ORTHO05D004217 1.1e-06 56.6 78 42.3
FAN27G1681 Fragaria x ananassa HOM05D003313 ORTHO05D015668 2.6e-06 55.5 37 73.0


User provided reference genes

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