Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 9.5e-147 523.5 261 100.0
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 9.5e-147 523.5 261 100.0
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 9.5e-147 523.5 261 100.0
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 3.1e-145 518.5 261 98.9
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 3.1e-145 518.5 261 98.9
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 5.0e-140 501.1 277 92.8
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 8.6e-140 500.4 261 95.0
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 2.8e-138 495.4 260 94.2
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 2.3e-137 492.3 261 93.1
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 3.1e-137 491.9 261 92.7
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 4.0e-137 491.5 261 93.1
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 6.8e-137 490.7 261 93.5
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 6.8e-137 490.7 261 93.5
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 6.8e-137 490.7 260 93.5
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 3.4e-136 488.4 261 92.7
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 3.4e-136 488.4 261 92.0
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 4.4e-136 488.0 261 93.1
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 9.8e-136 486.9 261 92.0
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 1.7e-135 486.1 261 91.2
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 1.7e-135 486.1 261 92.0
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 2.2e-135 485.7 261 92.0
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 2.9e-135 485.3 261 92.3
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 3.7e-135 485.0 261 91.2
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 6.4e-135 484.2 261 91.2
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 6.4e-135 484.2 260 91.9
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 8.3e-135 483.8 261 91.6
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 8.3e-135 483.8 261 90.8
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.1e-134 483.4 261 91.6
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 1.1e-134 483.4 261 91.2
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 1.4e-134 483.0 261 91.2
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 1.9e-134 482.6 261 91.6
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.9e-134 482.6 261 91.6
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 1.9e-134 482.6 260 91.5
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 1.9e-134 482.6 261 90.8
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 2.4e-134 482.3 261 90.4
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 3.2e-134 481.9 261 91.2
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 3.2e-134 481.9 261 90.8
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 4.1e-134 481.5 261 91.2
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 4.1e-134 481.5 261 91.2
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 4.1e-134 481.5 261 91.2
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 7.1e-134 480.7 261 90.4
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 7.1e-134 480.7 261 90.8
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 9.2e-134 480.3 261 90.8
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 1.2e-133 479.9 261 90.8
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.2e-133 479.9 261 90.4
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 1.2e-133 479.9 261 90.8
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 1.2e-133 479.9 261 89.7
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.6e-133 479.6 241 99.2
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 1.6e-133 479.6 261 90.8
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 2.1e-133 479.2 261 90.0
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 2.7e-133 478.8 261 90.4
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 4.6e-133 478.0 241 98.8
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 6.0e-133 477.6 260 90.8
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 7.8e-133 477.2 261 89.7
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 7.8e-133 477.2 261 90.4
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 7.8e-133 477.2 261 90.4
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 7.8e-133 477.2 261 90.4
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.0e-132 476.9 261 88.9
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 1.0e-132 476.9 265 88.7
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 1.7e-132 476.1 258 90.7
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 3.9e-132 474.9 261 90.0
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 1.1e-131 473.4 261 90.0
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 1.5e-131 473.0 260 90.0
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 2.5e-131 472.2 261 88.9
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 2.5e-131 472.2 259 90.7
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 2.5e-131 472.2 261 88.9
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 3.3e-131 471.9 261 88.1
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 3.3e-131 471.9 261 88.9
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 4.3e-131 471.5 261 88.1
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 4.3e-131 471.5 261 88.5
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 4.3e-131 471.5 261 88.5
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 1.2e-130 469.9 261 87.7
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 1.2e-130 469.9 261 87.7
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 1.2e-130 469.9 261 88.1
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 1.6e-130 469.5 261 88.1
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 1.6e-130 469.5 261 88.5
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 2.1e-130 469.2 261 87.7
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 2.1e-130 469.2 261 87.7
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 88.1
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 88.1
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 3.6e-130 468.4 269 87.0
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 3.6e-130 468.4 261 88.1
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 4.7e-130 468.0 261 88.1
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 4.7e-130 468.0 261 88.1
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 8.1e-130 467.2 261 88.5
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 8.1e-130 467.2 261 88.1
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 8.1e-130 467.2 255 89.4
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 1.4e-129 466.5 261 86.2
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 1.8e-129 466.1 261 87.7
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 2.3e-129 465.7 261 87.7
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 2.3e-129 465.7 261 88.1
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 3.1e-129 465.3 261 88.5
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 5.2e-129 464.5 261 87.0
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 6.8e-129 464.2 285 82.8
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 1.5e-128 463.0 261 85.4
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 1.5e-128 463.0 264 87.1
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 2.6e-128 462.2 261 87.0
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 5.8e-128 461.1 261 88.1
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 7.6e-128 460.7 261 86.6
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 9.9e-128 460.3 261 85.8
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 9.9e-128 460.3 261 84.7
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 1.7e-127 459.5 261 86.2
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 3.7e-127 458.4 261 84.3
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 4.9e-127 458.0 261 86.2
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 6.4e-127 457.6 261 86.2
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 1.1e-126 456.8 261 87.0
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 1.4e-126 456.4 261 85.8
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 1.9e-126 456.1 261 86.6
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 4.1e-126 454.9 261 85.8
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 9.2e-126 453.8 260 87.3
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 1.2e-125 453.4 260 85.8
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 1.2e-125 453.4 260 85.8
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 1.2e-125 453.4 261 86.2
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 2.1e-125 452.6 261 85.4
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 2.1e-125 452.6 261 85.4
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 2.7e-125 452.2 261 85.8
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 3.5e-125 451.8 261 82.4
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 3.5e-125 451.8 261 85.1
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 1.0e-124 450.3 260 85.4
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 1.3e-124 449.9 259 85.7
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 1.3e-124 449.9 259 85.7
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 1.3e-124 449.9 240 92.5
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 1.3e-124 449.9 261 82.8
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 4.3e-123 444.9 261 84.7
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 2.1e-122 442.6 261 84.7
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 8.1e-122 440.7 261 83.5
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 2.4e-121 439.1 261 82.4
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 4.0e-121 438.3 261 82.8
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 5.2e-121 438.0 255 84.7
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 8.9e-121 437.2 261 83.1
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 1.5e-120 436.4 261 83.5
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.6e-120 435.6 337 70.3
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 7.8e-117 424.1 261 77.0
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 1.7e-116 422.9 276 78.3
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 2.8e-114 415.6 261 80.8
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 4.8e-114 414.8 261 77.8
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 9.0e-113 410.6 261 78.2
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 1.2e-112 410.2 261 78.5
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 1.2e-112 410.2 261 78.5
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 3.8e-111 405.2 261 79.3
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 1.9e-110 402.9 266 75.6
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 1.3e-108 396.7 213 90.1
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 5.1e-108 394.8 261 77.8
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 5.1e-108 394.8 222 87.8
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 3.1e-105 385.6 309 68.9
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 1.5e-104 383.3 201 92.0
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 2.0e-104 382.9 254 76.8
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 9.9e-104 380.6 240 79.6
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.3e-98 363.6 200 89.5
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 4.0e-97 358.6 195 87.2
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.5e-96 356.7 177 98.3
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 1.1e-94 350.5 257 73.9
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 2.4e-89 332.8 260 62.7
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 4.1e-81 305.4 160 90.0
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 2.6e-72 276.2 228 61.8
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 2.8e-66 256.1 240 59.6
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.7e-58 230.3 135 86.7
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.8e-57 226.9 113 93.8
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 7.0e-57 224.9 143 81.1
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 3.5e-56 222.6 142 80.3
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 3.7e-50 202.6 271 51.3
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 2.7e-48 196.4 98 92.9
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 9.8e-43 177.9 108 83.3
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 3.7e-42 176.0 140 67.1
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 2.7e-40 169.9 196 50.5
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 1.2e-37 161.0 135 63.7
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 1.6e-37 160.6 92 85.9
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 9.8e-35 151.4 100 80.0
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 1.7e-34 150.6 195 47.2
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 1.8e-28 130.6 81 80.2
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 1.2e-27 127.9 92 70.7
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.3e-23 114.4 111 58.6
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 2.3e-20 103.6 64 81.2
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 4.1e-17 92.8 81 64.2
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 2.2e-10 70.5 56 67.9
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 6.4e-10 68.9 59 61.0
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 7.1e-09 65.5 62 61.3
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 3.5e-08 63.2 44 75.0
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 1.0e-07 61.6 35 80.0
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 5.1e-07 59.3 38 71.1
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 8.6e-07 58.5 52 61.5
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 1.1e-06 58.2 34 79.4
BolC4t24585H Brassica oleracea HOM05D002284 ORTHO05D033292 2.5e-06 57.0 34 79.4


User provided reference genes

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