Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.5e-221 773.1 577 100.0
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 1.1e-216 756.9 578 96.9
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 2.1e-207 726.1 579 91.4
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 3.1e-174 615.9 573 74.3
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 4.1e-110 402.9 500 59.4
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 1.7e-92 344.4 569 46.4
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 1.6e-90 337.8 575 47.5
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 1.4e-89 334.7 525 59.2
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 1.3e-82 311.6 524 57.8
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 2.4e-81 307.4 531 42.7
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.2e-77 295.0 502 42.2
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.6e-77 294.7 508 41.5
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 6.0e-77 292.7 503 42.3
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 2.0e-72 277.7 583 40.5
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 2.6e-72 277.3 569 41.5
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 9.9e-72 275.4 522 40.8
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 6.4e-71 272.7 544 40.8
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 4.6e-69 266.5 526 37.6
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 6.0e-69 266.2 523 41.1
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.1e-67 261.9 487 39.8
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 7.4e-67 259.2 530 38.9
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 2.8e-66 257.3 550 38.9
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 2.8e-66 257.3 507 38.9
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.8e-65 254.6 507 39.6
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 1.8e-65 254.6 572 39.5
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 3.4e-64 250.4 528 40.2
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 8.4e-63 245.7 504 37.9
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.9e-62 244.6 488 38.1
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 2.5e-62 244.2 522 36.6
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 4.2e-62 243.4 524 37.6
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 4.2e-62 243.4 524 37.6
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 1.6e-61 241.5 529 49.7
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 6.0e-61 239.6 545 35.0
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 6.7e-60 236.1 475 39.8
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 1.5e-59 235.0 486 37.0
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 1.5e-59 235.0 490 35.9
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 7.4e-59 232.6 500 37.4
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 7.4e-59 232.6 500 37.4
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 6.9e-57 226.1 533 37.9
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 1.2e-56 225.3 602 33.2
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 1.5e-56 224.9 511 35.4
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 3.2e-54 217.2 561 53.5
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 5.5e-54 216.5 512 34.4
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 1.2e-53 215.3 499 35.3
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 1.2e-53 215.3 480 35.0
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 7.9e-53 212.6 540 35.2
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 2.3e-52 211.1 494 35.8
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 3.9e-52 210.3 527 35.1
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 1.1e-51 208.8 533 45.4
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.1e-51 208.8 496 35.7
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 2.5e-51 207.6 493 35.3
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 4.3e-51 206.8 484 36.6
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 2.2e-50 204.5 484 36.6
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 3.7e-50 203.8 501 54.9
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 1.8e-49 201.4 540 47.6
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 1.2e-48 198.7 549 32.6
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 7.7e-48 196.1 486 34.0
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 7.7e-48 196.1 510 43.1
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.0e-47 195.7 500 35.8
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 1.3e-47 195.3 567 34.6
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 3.8e-47 193.7 601 38.3
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 5.0e-47 193.4 472 35.0
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 7.2e-46 189.5 536 34.0
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.6e-45 188.3 538 32.3
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 2.1e-45 188.0 509 33.6
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 7.9e-45 186.0 451 36.8
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 1.8e-44 184.9 551 48.1
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 1.8e-44 184.9 512 34.0
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 3.9e-44 183.7 499 32.3
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 3.9e-44 183.7 499 32.3
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 5.1e-44 183.3 530 44.9
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 1.1e-43 182.2 503 32.4
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.0e-43 181.4 456 36.4
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 2.0e-43 181.4 544 32.9
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 3.3e-43 180.6 525 31.8
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 2.8e-42 177.6 552 46.2
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 2.8e-42 177.6 550 31.8
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 2.8e-42 177.6 471 38.9
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 3.7e-42 177.2 568 32.9
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 4.8e-42 176.8 538 33.6
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 6.3e-42 176.4 524 33.8
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 1.1e-41 175.6 569 30.9
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 9.1e-41 172.6 576 30.4
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.2e-40 172.2 579 30.2
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 5.9e-40 169.9 534 34.5
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 7.7e-40 169.5 534 30.0
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 3.8e-39 167.2 494 41.3
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 5.0e-39 166.8 485 32.2
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 3.2e-38 164.1 539 32.3
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 1.2e-37 162.2 604 32.3
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 8.0e-37 159.5 557 30.9
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 1.4e-36 158.7 566 31.3
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 1.8e-36 158.3 538 32.2
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 1.5e-35 155.2 488 39.1
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 2.6e-35 154.5 533 38.1
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 2.6e-35 154.5 533 38.1
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 5.7e-35 153.3 535 37.4
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 7.4e-35 152.9 565 28.3
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 3.7e-34 150.6 508 44.1
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 4.8e-34 150.2 505 42.2
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 4.8e-34 150.2 494 33.2
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 6.3e-34 149.8 507 42.8
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 1.4e-33 148.7 564 28.4
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.8e-33 148.3 477 31.7
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 3.1e-33 147.5 537 41.0
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 2.0e-32 144.8 537 41.2
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 2.6e-32 144.4 212 46.7
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 4.5e-32 143.7 547 43.1
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 5.9e-32 143.3 547 43.0
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 1.9e-30 138.3 552 42.0
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 3.2e-30 137.5 567 30.3
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 2.7e-29 134.4 532 41.5
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 3.6e-29 134.0 172 47.7
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.0e-28 132.5 441 35.4
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 3.0e-28 131.0 502 29.3
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 6.8e-28 129.8 500 31.4
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 8.8e-28 129.4 525 27.8
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 7.5e-27 126.3 175 50.3
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 4.8e-26 123.6 515 29.3
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 6.3e-26 123.2 584 29.6
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 1.1e-25 122.5 503 29.8
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 5.3e-25 120.2 173 44.5
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 9.1e-25 119.4 173 44.5
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.2e-24 119.0 118 61.9
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 5.9e-24 116.7 525 26.7
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 2.2e-23 114.8 174 44.8
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 6.5e-23 113.2 529 29.3
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 8.5e-23 112.8 160 47.5
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.1e-22 112.5 155 47.7
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 1.9e-22 111.7 515 45.6
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.9e-22 111.7 425 28.7
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 1.2e-21 109.0 511 43.1
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.4e-20 105.5 532 27.1
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 2.3e-20 104.8 567 28.2
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 3.0e-20 104.4 548 28.1
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.5e-19 102.1 448 27.9
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 9.8e-19 99.4 533 25.9
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.3e-18 99.0 179 38.5
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 2.2e-18 98.2 168 43.5
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 6.3e-18 96.7 137 48.2
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 1.1e-17 95.9 159 44.7
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 7.0e-17 93.2 411 26.0
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 9.1e-17 92.8 519 27.4
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 5.9e-16 90.1 172 43.0
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 7.7e-16 89.7 535 28.6
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 1.3e-15 89.0 546 27.8
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 3.8e-15 87.4 176 39.8
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 5.0e-15 87.0 541 28.1
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.1e-14 85.9 205 34.1
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 1.5e-14 85.5 525 27.6
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 1.9e-14 85.1 131 43.5
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 2.5e-14 84.7 169 40.2
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 7.2e-14 83.2 151 41.1
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 2.1e-13 81.6 520 26.3
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 2.1e-13 81.6 147 39.5
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 3.6e-13 80.9 223 35.4
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 4.7e-13 80.5 500 25.6
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 1.4e-12 79.0 170 39.4
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 2.3e-12 78.2 132 39.4
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.3e-12 78.2 149 42.3
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 2.3e-12 78.2 156 41.0
Ah.03g142000 Amaranthus hybridus HOM05D000288 ORTHO05D000173 3.0e-12 77.8 216 33.8
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 4.4e-11 73.9 118 42.4
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 2.8e-10 71.2 141 39.7
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 6.3e-10 70.1 149 34.2
Sc16g0000800 Simmondsia chinensis HOM05D003733 ORTHO05D004035 2.4e-09 68.2 199 32.7
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 5.4e-09 67.0 165 46.1
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 7.0e-09 66.6 68 67.6
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 7.8e-08 63.2 187 34.2
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 7.8e-08 63.2 187 33.7
Zm00001eb186830 Zea mays HOM05D003733 ORTHO05D004035 3.3e-06 57.8 165 32.1
MD02G1269600 Malus domestica HOM05D003733 ORTHO05D004035 5.6e-06 57.0 50 58.0
Atru.chr6.1386 Acer truncatum HOM05D017445 ORTHO05D018150 9.5e-06 56.2 143 36.4


User provided reference genes

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