Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G2992 Fragaria x ananassa HOM05D001739 ORTHO05D015654 0.0e+00 1091.6 572 100.0
FvH4_1g08750 Fragaria vesca HOM05D001739 ORTHO05D015654 1.4e-283 979.2 572 91.3
FAN19G1672 Fragaria x ananassa HOM05D001739 ORTHO05D015654 1.2e-271 939.5 574 85.7
FvH4_1g08691 Fragaria vesca HOM05D001739 ORTHO05D015654 1.5e-261 906.0 572 82.7
FvH4_1g08730 Fragaria vesca HOM05D001739 ORTHO05D015654 2.8e-260 901.7 570 82.6
FAN26G0106 Fragaria x ananassa HOM05D001739 ORTHO05D015654 1.0e-257 893.3 570 82.5
FAN26G3321 Fragaria x ananassa HOM05D001739 ORTHO05D015654 1.1e-248 863.2 570 80.2
FAN26G3373 Fragaria x ananassa HOM05D001739 ORTHO05D015654 3.7e-236 821.6 578 77.3
RcHm_v2.0_Chr2g0095131 Rosa chinensis HOM05D001739 ORTHO05D015654 1.0e-185 654.1 581 64.2
FAN26G3327 Fragaria x ananassa HOM05D001739 ORTHO05D015654 6.0e-178 628.2 579 64.6
FAN26G1219 Fragaria x ananassa HOM05D001739 ORTHO05D210162 1.6e-130 470.7 366 73.0
FAN23G2998 Fragaria x ananassa HOM05D001739 ORTHO05D198978 1.5e-123 447.6 264 89.8
RcHm_v2.0_Chr2g0094991 Rosa chinensis HOM05D001739 ORTHO05D029616 2.0e-120 437.2 597 48.2
RcHm_v2.0_Chr2g0095061 Rosa chinensis HOM05D001739 ORTHO05D029616 1.2e-117 427.9 597 47.9
FAN10G4203 Fragaria x ananassa HOM05D001739 ORTHO05D029616 3.5e-109 399.8 607 44.8
FAN28G3010 Fragaria x ananassa HOM05D001739 ORTHO05D207861 5.9e-109 399.1 240 89.2
FAN26G3315 Fragaria x ananassa HOM05D001739 ORTHO05D025407 1.7e-108 397.5 594 46.3
FvH4_1g08660 Fragaria vesca HOM05D001739 ORTHO05D025407 5.5e-107 392.5 595 45.5
FvH4_1g08670 Fragaria vesca HOM05D001739 ORTHO05D025407 5.9e-93 345.9 595 43.5
FAN19G1997 Fragaria x ananassa HOM05D001739 ORTHO05D015654 1.5e-80 304.7 201 79.1
Prupe.7G193800 Prunus persica HOM05D001739 ORTHO05D004575 4.0e-73 280.0 516 40.5
RcHm_v2.0_Chr2g0095731 Rosa chinensis HOM05D001739 ORTHO05D004575 5.2e-73 279.6 519 40.5
FAN23G1590 Fragaria x ananassa HOM05D001739 ORTHO05D004575 1.3e-71 275.0 554 38.6
MD15G1221900 Malus domestica HOM05D001739 ORTHO05D004575 2.2e-71 274.2 549 39.2
FvH4_1g09210 Fragaria vesca HOM05D001739 ORTHO05D004575 6.4e-71 272.7 554 38.4
FAN19G0975 Fragaria x ananassa HOM05D001739 ORTHO05D004575 1.2e-69 268.5 554 38.3
FAN26G0091 Fragaria x ananassa HOM05D001739 ORTHO05D004575 1.6e-69 268.1 554 38.1
FAN26G1120 Fragaria x ananassa HOM05D001739 ORTHO05D004575 2.1e-69 267.7 550 38.4
FAN26G1945 Fragaria x ananassa HOM05D001739 ORTHO05D035581 4.6e-69 266.5 588 36.9
Prupe.6G204500 Prunus persica HOM05D001739 ORTHO05D004575 4.6e-69 266.5 519 39.5
TWI32G0648 Tripterygium wilfordii HOM05D001739 ORTHO05D004575 1.3e-68 265.0 468 38.9
FAN28G0236 Fragaria x ananassa HOM05D001739 ORTHO05D004575 1.7e-68 264.6 583 36.9
Dinv25520 Davidia involucrata HOM05D001739 ORTHO05D004575 2.3e-68 264.2 509 38.9
MD02G1099100 Malus domestica HOM05D001739 ORTHO05D004575 1.4e-65 255.0 522 39.5
COL.COLO4_21223 Corchorus olitorius HOM05D001739 ORTHO05D004575 2.4e-65 254.2 468 38.5
Ciclev10023308m.g Citrus clementina HOM05D001739 ORTHO05D004575 7.6e-64 249.2 543 36.5
Lj7C690T11 Lonicera japonica HOM05D001739 ORTHO05D004575 7.6e-64 249.2 508 36.8
Manes.16G091500 Manihot esculenta HOM05D001739 ORTHO05D004575 1.3e-63 248.4 542 36.5
Hma1.2p1_0169F.1_g074380 Hydrangea macrophylla HOM05D001739 ORTHO05D004575 3.8e-63 246.9 468 37.6
FvH4_1g13570 Fragaria vesca HOM05D001739 ORTHO05D004575 4.9e-63 246.5 495 37.0
Cfa002954 Carpinus fangiana HOM05D001739 ORTHO05D004575 6.4e-63 246.1 527 36.8
CsaV3_1G041350 Cucumis sativus L. HOM05D001739 ORTHO05D004575 3.2e-62 243.8 523 36.3
Rhsim05G0003800 Rhododendron simsii HOM05D001739 ORTHO05D004575 7.1e-62 242.7 470 36.2
FAN19G0960 Fragaria x ananassa HOM05D001739 ORTHO05D025407 9.3e-62 242.3 335 45.7
HanXRQChr09g0273551 Helianthus annuus HOM05D001739 ORTHO05D004575 1.6e-61 241.5 544 34.6
ClCG03G014800 Citrullus lanatus HOM05D001739 ORTHO05D004575 2.7e-61 240.7 523 35.9
PGR142G3865 Punica granatum HOM05D001739 ORTHO05D004575 2.7e-61 240.7 546 35.5
Lsat_1_v5_gn_7_35381 Lactuca sativa HOM05D001739 ORTHO05D004575 4.6e-61 240.0 538 34.8
Potri.006G137900 Populus trichocarpa HOM05D001739 ORTHO05D004575 6.0e-61 239.6 562 34.2
Atru.chr7.1752 Acer truncatum HOM05D001739 ORTHO05D004575 7.8e-61 239.2 553 35.1
MELO3C015548.2 Cucumis melo HOM05D001739 ORTHO05D004575 7.8e-61 239.2 523 35.4
Lj4g0016027 Lotus japonicus HOM05D001739 ORTHO05D004575 7.8e-61 239.2 477 36.9
FvH4_1g13610 Fragaria vesca HOM05D001739 ORTHO05D004575 1.0e-60 238.8 573 34.4
Thecc.09G071800 Theobroma cacao HOM05D001739 ORTHO05D004575 1.0e-60 238.8 507 36.3
FAN19G0770 Fragaria x ananassa HOM05D001739 ORTHO05D004575 1.7e-60 238.0 573 34.4
Duzib168G0208 Durio zibethinus HOM05D001739 ORTHO05D004575 2.3e-60 237.7 490 36.1
Gohir.A07G016500 Gossypium hirsutum HOM05D001739 ORTHO05D004575 2.3e-60 237.7 468 36.1
vmacro17113 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 2.3e-60 237.7 478 35.8
Gorai.001G017100 Gossypium raimondii HOM05D001739 ORTHO05D004575 6.6e-60 236.1 468 36.1
HanXRQChr04g0122371 Helianthus annuus HOM05D001739 ORTHO05D004575 8.7e-60 235.7 529 35.5
QL11p002157 Quercus lobata HOM05D001739 ORTHO05D004575 1.9e-59 234.6 471 37.6
Sabra18G0055900 Salix brachista HOM05D001739 ORTHO05D004575 1.9e-59 234.6 561 33.9
Sed0021617 Sechium edule HOM05D001739 ORTHO05D004575 1.9e-59 234.6 526 35.2
Gohir.D07G016300 Gossypium hirsutum HOM05D001739 ORTHO05D004575 2.5e-59 234.2 468 35.9
FAN23G1058 Fragaria x ananassa HOM05D001739 ORTHO05D025407 5.6e-59 233.0 335 44.8
CSS0017458 Camellia sinensis var. sinensis HOM05D001739 ORTHO05D004575 2.1e-58 231.1 476 36.1
Nitab4.5_0007773g0020 Nicotiana tabacum HOM05D001739 ORTHO05D004575 2.1e-58 231.1 520 33.7
Cpa.g.sc32.6 Carica papaya HOM05D001739 ORTHO05D004575 2.8e-58 230.7 542 34.7
CiPaw.03G202600 Carya illinoinensis HOM05D001739 ORTHO05D004575 6.2e-58 229.6 551 34.1
FvH4_5g06040 Fragaria vesca HOM05D001739 ORTHO05D029422 8.1e-58 229.2 538 34.0
Nn8g40294 Nelumbo nucifera HOM05D001739 ORTHO05D004575 8.1e-58 229.2 509 34.6
GSVIVG01023097001 Vitis vinifera HOM05D001739 ORTHO05D004575 1.8e-57 228.0 505 35.4
Sopen07g021980 Solanum pennellii HOM05D001739 ORTHO05D004575 2.4e-57 227.6 520 34.0
CANSAT56G3462 Cannabis sativa HOM05D001739 ORTHO05D004575 3.1e-57 227.3 549 34.4
Lalb_Chr13g0299281 Lupinus albus HOM05D001739 ORTHO05D004575 3.1e-57 227.3 475 37.5
Prupe.7G186700 Prunus persica HOM05D001739 ORTHO05D004575 3.1e-57 227.3 492 35.8
MSTRG.5982 Avicennia marina HOM05D001739 ORTHO05D004575 9.0e-57 225.7 509 34.2
Lalb_Chr12g0200311 Lupinus albus HOM05D001739 ORTHO05D004575 7.6e-56 222.6 468 36.8
vmacro17095 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 7.6e-56 222.6 476 34.9
DCAR_005064 Daucus carota HOM05D001739 ORTHO05D004575 1.3e-55 221.9 507 34.1
vmacro23084 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 1.3e-55 221.9 476 34.9
TAR383G0739 Trochodendron aralioides HOM05D001739 ORTHO05D004575 1.7e-55 221.5 552 32.4
Sed0004150 Sechium edule HOM05D001739 ORTHO05D004575 2.9e-55 220.7 517 34.4
arahy.Tifrunner.gnm1.ann1.SDZ4E8 Arachis hypogaea HOM05D001739 ORTHO05D004575 4.9e-55 219.9 478 35.6
Cc06_g12580 Coffea canephora HOM05D001739 ORTHO05D004575 4.9e-55 219.9 471 35.9
Nitab4.5_0001565g0110 Nicotiana tabacum HOM05D001739 ORTHO05D004575 8.4e-55 219.2 569 31.8
CAN.G63.12 Capsicum annuum HOM05D001739 ORTHO05D004575 1.4e-54 218.4 525 33.3
arahy.Tifrunner.gnm1.ann1.9HZQ4R Arachis hypogaea HOM05D001739 ORTHO05D004575 9.3e-54 215.7 481 35.1
SGA_v2.0_scaffold281G46906 Striga asiatica HOM05D001739 ORTHO05D004575 1.6e-53 214.9 510 34.3
FAN26G0455 Fragaria x ananassa HOM05D001739 ORTHO05D004575 1.3e-52 211.8 568 32.4
Ca_09790_v3 Cicer arietinum L. HOM05D001739 ORTHO05D004575 3.9e-52 210.3 480 34.8
FAN08G1830 Fragaria x ananassa HOM05D001739 ORTHO05D004575 3.9e-52 210.3 530 33.2
Glyma.13G112900 Glycine max HOM05D001739 ORTHO05D004575 5.1e-52 209.9 552 33.2
Medtr1g072890 Medicago truncatula HOM05D001739 ORTHO05D004575 5.1e-52 209.9 467 34.7
Glyma.17G046900 Glycine max HOM05D001739 ORTHO05D004575 1.5e-51 208.4 493 34.7
Phvul.003G128600 Phaseolus vulgaris HOM05D001739 ORTHO05D004575 9.6e-51 205.7 467 34.9
ECA240G3214 Erigeron canadensis HOM05D001739 ORTHO05D004575 2.1e-50 204.5 542 31.4
DCAR_003861 Daucus carota HOM05D001739 ORTHO05D004575 2.8e-50 204.1 446 36.1
VMungo1215G0229 Vigna mungo HOM05D001739 ORTHO05D004575 4.8e-50 203.4 469 34.3
Aqoxy7G03292 Aquilegia oxysepala HOM05D001739 ORTHO05D004575 1.8e-49 201.4 556 32.6
arahy.Tifrunner.gnm1.ann1.WW7XLJ Arachis hypogaea HOM05D001739 ORTHO05D004575 1.8e-49 201.4 476 34.9
FvH4_7g02570 Fragaria vesca HOM05D001739 ORTHO05D029616 2.4e-49 201.1 278 47.8
AUR62039592 Chenopodium quinoa HOM05D001739 ORTHO05D004575 3.1e-49 200.7 487 32.4
Solyc07g042380.4 Solanum lycopersicum HOM05D001739 ORTHO05D004575 3.1e-49 200.7 511 32.3
THA.LOC104809049 Tarenaya hassleriana HOM05D001739 ORTHO05D004575 3.1e-49 200.7 527 32.3
arahy.Tifrunner.gnm1.ann1.7457H2 Arachis hypogaea HOM05D001739 ORTHO05D004575 5.3e-49 199.9 478 34.7
unitig_744.g24652 Utricularia gibba HOM05D001739 ORTHO05D004575 1.2e-48 198.7 476 32.1
Psat6g134600 Pisum sativum HOM05D001739 ORTHO05D004575 3.4e-48 197.2 477 33.1
HPP92_004359 Vanilla planifolia HOM05D001739 ORTHO05D004575 3.4e-48 197.2 539 31.7
TPR.G13945 Trifolium pratense HOM05D001739 ORTHO05D004575 5.8e-48 196.4 473 35.3
AUR62019633 Chenopodium quinoa HOM05D001739 ORTHO05D004575 1.3e-47 195.3 469 31.6
EL10Ac8g19018 Beta vulgaris HOM05D001739 ORTHO05D004575 2.2e-47 194.5 529 31.0
TPR.G18558 Trifolium pratense HOM05D001739 ORTHO05D004575 2.9e-47 194.1 481 33.5
Haze_26051 Corylus avellana HOM05D001739 ORTHO05D004575 3.8e-47 193.7 525 33.1
Thhalv10016153m.g Eutrema salsugineum HOM05D001739 ORTHO05D004575 3.8e-47 193.7 496 33.3
Psat7g002920 Pisum sativum HOM05D001739 ORTHO05D004575 3.8e-47 193.7 470 33.6
FAN26G0957 Fragaria x ananassa HOM05D001739 ORTHO05D015654 4.9e-47 193.4 106 91.5
CDE12G0121 Ceratophyllum demersum HOM05D001739 ORTHO05D004575 8.4e-47 192.6 528 31.1
Medtr1g072970 Medicago truncatula HOM05D001739 ORTHO05D004575 7.1e-46 189.5 549 31.0
SHI02768 Sapria himalayana HOM05D001739 ORTHO05D004575 9.3e-46 189.1 506 31.6
Ah.09g229240 Amaranthus hybridus HOM05D001739 ORTHO05D004575 6.0e-45 186.4 478 31.4
Aa31LG9G14080 Aethionema arabicum HOM05D001739 ORTHO05D004575 7.9e-45 186.0 496 32.7
FAN18G1935 Fragaria x ananassa HOM05D001739 ORTHO05D029422 7.9e-45 186.0 444 33.8
Sp4g16630 Schrenkiella parvula HOM05D001739 ORTHO05D004575 7.9e-45 186.0 498 32.7
FvH4_5g05990 Fragaria vesca HOM05D001739 ORTHO05D029422 1.0e-44 185.7 515 32.2
Sc24g0001530 Simmondsia chinensis HOM05D001739 ORTHO05D004575 1.8e-44 184.9 515 30.1
ATR0681G226 Amborella trichopoda HOM05D001739 ORTHO05D004575 3.0e-44 184.1 466 33.3
A03p19100 Brassica napus HOM05D001739 ORTHO05D004575 3.0e-44 184.1 532 31.0
BolC3t14614H Brassica oleracea HOM05D001739 ORTHO05D004575 3.0e-44 184.1 532 31.0
BraA03t11167Z Brassica rapa HOM05D001739 ORTHO05D004575 3.0e-44 184.1 532 31.0
BcaC01g05798 Brassica carinata HOM05D001739 ORTHO05D004575 8.7e-44 182.6 532 30.5
C03p22320 Brassica napus HOM05D001739 ORTHO05D004575 1.9e-43 181.4 532 30.8
AT2G34357 Arabidopsis thaliana HOM05D001739 ORTHO05D004575 4.3e-43 180.3 498 31.7
Carub.0004s1602 Capsella rubella HOM05D001739 ORTHO05D004575 4.8e-42 176.8 498 31.3
PSO421G0331 Papaver somniferum HOM05D001739 ORTHO05D004575 6.2e-42 176.4 556 30.2
AL4G30320 Arabidopsis lyrata HOM05D001739 ORTHO05D004575 8.1e-42 176.0 479 32.6
PSO104G0064 Papaver somniferum HOM05D001739 ORTHO05D004575 8.1e-42 176.0 546 30.6
Peaxi162Scf00191g01112 Petunia axillaris HOM05D001739 ORTHO05D004575 1.4e-41 175.3 515 28.9
BraA05t20081Z Brassica rapa HOM05D001739 ORTHO05D004575 3.1e-41 174.1 495 32.3
BcaB02g09558 Brassica carinata HOM05D001739 ORTHO05D004575 5.3e-41 173.3 500 32.0
BcaB01g03896 Brassica carinata HOM05D001739 ORTHO05D004575 9.0e-41 172.6 499 32.7
A05p11320 Brassica napus HOM05D001739 ORTHO05D004575 1.2e-40 172.2 495 32.1
AUR62028280 Chenopodium quinoa HOM05D001739 ORTHO05D004575 1.5e-40 171.8 514 30.0
C04p14660 Brassica napus HOM05D001739 ORTHO05D004575 1.7e-39 168.3 535 30.1
BolC4t23047H Brassica oleracea HOM05D001739 ORTHO05D004575 1.7e-39 168.3 535 30.1
BcaC02g11500 Brassica carinata HOM05D001739 ORTHO05D004575 2.2e-39 167.9 495 31.9
CARHR128440 Cardamine hirsuta HOM05D001739 ORTHO05D004575 1.1e-38 165.6 498 31.5
FAN18G0943 Fragaria x ananassa HOM05D001739 ORTHO05D029422 1.4e-38 165.2 515 31.1
Hund23253 Selenicereus undatus HOM05D001739 ORTHO05D004575 2.5e-38 164.5 476 29.8
BcaC02g11606 Brassica carinata HOM05D001739 ORTHO05D004575 3.0e-36 157.5 493 30.2
C04p13350 Brassica napus HOM05D001739 ORTHO05D004575 3.0e-36 157.5 493 30.2
CDE04G0230 Ceratophyllum demersum HOM05D001739 ORTHO05D004575 3.9e-36 157.1 373 34.0
TPR.G34376 Trifolium pratense HOM05D001739 ORTHO05D004575 7.4e-35 152.9 345 33.9
Os02g0782100 Oryza sativa ssp. japonica HOM05D001739 ORTHO05D004575 2.0e-32 144.8 366 32.2
Pp3c2_3190 Physcomitrium patens HOM05D001739 ORTHO05D004575 1.2e-29 135.6 470 26.6
CAN.G333.15 Capsicum annuum HOM05D001739 ORTHO05D004575 6.1e-29 133.3 273 36.3
FAN23G2122 Fragaria x ananassa HOM05D001739 ORTHO05D035581 1.3e-28 132.1 218 45.9
SEGI_37036 Sequoiadendron giganteum HOM05D001739 ORTHO05D004575 5.1e-28 130.2 431 27.6
SEGI_16086 Sequoiadendron giganteum HOM05D001739 ORTHO05D004575 9.7e-27 125.9 460 28.9
Mapoly0061s0020 Marchantia polymorpha HOM05D001739 ORTHO05D004575 1.7e-23 115.2 484 25.6
FAN28G1182 Fragaria x ananassa HOM05D001739 ORTHO05D004575 2.2e-23 114.8 211 40.8
Sc18g0003470 Simmondsia chinensis HOM05D001739 ORTHO05D004575 9.4e-22 109.4 260 34.6
FAN19G1230 Fragaria x ananassa HOM05D001739 ORTHO05D206032 2.1e-21 108.2 70 81.4
AagrBONN_evm.TU.Sc2ySwM_117.3958 Anthoceros agrestis HOM05D001739 ORTHO05D004575 1.3e-18 99.0 495 24.8
AUR62025277 Chenopodium quinoa HOM05D001739 ORTHO05D004575 9.1e-17 92.8 222 33.8
FvH4_1g13590 Fragaria vesca HOM05D001739 ORTHO05D035581 1.5e-16 92.0 133 48.9
Zm00001eb257110 Zea mays HOM05D001739 ORTHO05D004575 2.0e-16 91.7 184 35.3
SMO361G0459 Selaginella moellendorffii HOM05D001739 ORTHO05D004575 3.8e-15 87.4 515 23.3
MD02G1098900 Malus domestica HOM05D001739 ORTHO05D004575 1.4e-14 85.5 113 46.9
Eucgr.C00777 Eucalyptus grandis HOM05D001739 ORTHO05D004575 3.2e-14 84.3 211 33.2
FAN04G1381 Fragaria x ananassa HOM05D001739 ORTHO05D004575 5.5e-14 83.6 168 37.5
Carub.0007s1775 Capsella rubella HOM05D001739 ORTHO05D006605 1.0e-12 79.3 508 23.8
Rhsim13G0126900 Rhododendron simsii HOM05D001739 ORTHO05D004575 5.7e-11 73.6 113 39.8
CDE12G0742 Ceratophyllum demersum HOM05D001739 ORTHO05D004575 1.3e-10 72.4 120 36.7
Sp7g21460 Schrenkiella parvula HOM05D001739 ORTHO05D006605 5.3e-09 67.0 472 25.6
EL10Ac8g19019 Beta vulgaris HOM05D001739 ORTHO05D010736 7.0e-09 66.6 176 26.1
AL7G29870 Arabidopsis lyrata HOM05D001739 ORTHO05D006605 2.0e-08 65.1 567 23.1
Aqoxy2G00202 Aquilegia oxysepala HOM05D001739 ORTHO05D006605 4.5e-08 63.9 515 21.9
AT4G23540 Arabidopsis thaliana HOM05D001739 ORTHO05D006605 7.7e-08 63.2 504 22.2
Thhalv10024271m.g Eutrema salsugineum HOM05D001739 ORTHO05D006605 5.0e-07 60.5 470 25.1


User provided reference genes

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