Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.1e-276 956.1 496 100.0
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 1.6e-275 952.2 493 100.0
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.1e-268 929.5 493 97.6
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.1e-268 929.5 493 97.2
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 3.2e-268 927.9 493 97.4
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 2.4e-244 848.6 495 88.9
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 1.5e-209 733.0 499 75.8
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 2.0e-209 732.6 507 75.0
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 4.5e-198 694.9 467 74.3
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 3.2e-196 688.7 467 74.3
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 2.3e-194 682.6 503 70.8
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 1.3e-192 676.8 489 70.1
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 5.9e-190 667.9 497 68.4
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 1.0e-189 667.2 472 71.2
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 1.0e-189 667.2 522 67.4
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 2.9e-189 665.6 493 69.0
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 8.0e-187 657.5 508 68.5
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 8.0e-187 657.5 504 67.3
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.4e-186 656.8 508 68.9
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 1.8e-186 656.4 480 70.0
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 8.8e-186 654.1 490 68.2
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 8.8e-186 654.1 501 67.9
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.2e-185 653.7 468 70.1
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 1.2e-185 653.7 477 69.8
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 2.0e-185 652.9 471 70.3
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.6e-185 652.5 467 70.0
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 4.4e-185 651.7 517 65.4
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 1.7e-184 649.8 490 68.2
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 2.2e-184 649.4 502 66.5
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 2.8e-184 649.0 522 67.2
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 2.8e-184 649.0 512 65.8
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 8.3e-184 647.5 490 67.3
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 8.3e-184 647.5 505 66.3
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 3.1e-183 645.6 492 67.9
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 2.7e-182 642.5 489 67.9
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 5.0e-181 638.3 513 64.5
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 1.5e-180 636.7 482 67.2
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 1.5e-180 636.7 479 66.8
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 1.5e-180 636.7 500 67.0
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 3.3e-180 635.6 470 68.5
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 5.6e-180 634.8 470 68.7
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 7.3e-180 634.4 482 67.2
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 2.8e-179 632.5 505 65.7
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 1.0e-178 630.6 493 64.5
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 1.4e-178 630.2 471 68.6
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 1.8e-178 629.8 492 66.9
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 4.0e-178 628.6 493 64.7
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 8.9e-178 627.5 515 65.2
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 1.5e-177 626.7 516 62.8
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 2.6e-177 625.9 488 64.5
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 4.4e-177 625.2 444 70.5
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 2.9e-176 622.5 494 64.4
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 6.4e-176 621.3 481 67.2
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 1.4e-175 620.2 496 64.3
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 1.8e-175 619.8 494 65.0
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 4.1e-175 618.6 477 65.6
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 5.4e-175 618.2 501 64.5
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 1.3e-173 613.6 474 66.5
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 3.0e-173 612.5 474 66.0
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 6.6e-173 611.3 499 64.3
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 1.5e-172 610.1 469 66.3
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 2.5e-172 609.4 473 64.9
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 2.5e-172 609.4 460 66.1
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 9.5e-172 607.4 468 66.2
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 8.0e-171 604.4 473 63.6
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 1.0e-170 604.0 465 64.5
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 5.2e-170 601.7 537 60.1
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 1.5e-169 600.1 468 64.3
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 3.4e-169 599.0 499 61.5
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 1.3e-168 597.0 478 63.6
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 4.9e-168 595.1 467 63.8
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 8.3e-168 594.3 468 64.1
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 1.1e-167 594.0 463 66.5
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 1.2e-166 590.5 466 63.5
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 1.2e-166 590.5 468 63.7
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 2.7e-166 589.3 470 63.6
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 3.5e-166 589.0 478 62.8
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 3.5e-166 589.0 478 62.8
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.5e-166 589.0 486 63.6
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 3.5e-166 589.0 499 61.7
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.1e-164 583.9 425 68.7
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 2.5e-164 582.8 504 60.5
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 2.5e-164 582.8 504 60.5
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 9.5e-164 580.9 533 58.5
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 2.3e-162 576.2 476 61.3
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 2.2e-160 569.7 448 62.7
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 3.7e-160 568.9 485 61.0
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 6.2e-155 551.6 468 62.2
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 9.9e-153 544.3 493 59.4
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 4.6e-150 535.4 572 53.3
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 1.3e-149 533.9 477 58.1
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 3.9e-149 532.3 418 63.4
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 2.5e-148 529.6 398 65.3
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 3.6e-147 525.8 378 68.8
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.0e-145 520.0 492 56.9
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 5.4e-143 511.9 404 67.1
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 7.8e-142 508.1 476 56.7
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 1.4e-138 497.3 473 55.8
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.7e-136 490.3 396 62.1
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.2e-136 490.0 486 56.2
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 3.9e-133 479.2 487 55.6
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 6.7e-125 451.8 355 65.4
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 6.2e-123 445.3 461 51.2
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 4.8e-115 419.1 465 48.8
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 5.3e-106 389.0 266 71.4
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 3.4e-97 359.8 229 75.1
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 5.7e-92 342.4 294 62.2
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 3.5e-89 333.2 240 67.5
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 3.5e-89 333.2 240 67.5
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 1.2e-84 318.2 267 61.8
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 7.5e-84 315.5 200 74.5
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 2.2e-83 313.9 201 73.6
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 1.1e-79 301.6 327 49.2
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 1.6e-78 297.7 338 47.6
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 4.0e-77 293.1 270 59.3
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 6.8e-77 292.4 171 86.5
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 1.7e-75 287.7 302 49.3
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 1.8e-74 284.3 211 68.7
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 7.0e-74 282.3 221 65.2
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 2.7e-73 280.4 224 65.6
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 3.4e-68 263.5 185 68.6
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.4e-68 263.1 223 60.5
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 7.5e-68 262.3 190 66.8
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 1.6e-65 254.6 253 53.0
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 4.3e-63 246.5 178 68.0
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 6.6e-56 222.6 158 70.9
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 6.4e-51 206.1 162 61.1
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 2.1e-41 174.5 420 29.3
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 7.3e-39 166.0 162 58.0
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 9.9e-36 155.6 489 30.1
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.1e-33 147.9 230 41.3
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.8e-29 134.8 159 50.3
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.0e-28 131.3 133 56.4
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 9.3e-26 122.5 146 45.9
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.3e-22 112.1 101 55.4
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 2.0e-20 104.8 54 92.6
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.1e-18 99.0 61 78.7
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 2.5e-15 87.8 58 70.7
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 3.4e-12 77.4 177 31.6
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 1.3e-11 75.5 150 32.7
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 3.2e-10 70.9 78 51.3
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.6e-09 68.6 84 46.4
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 7.9e-09 66.2 74 54.1
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.3e-07 60.8 114 40.4


User provided reference genes

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