Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 0.0e+00 1238.8 725 100.0
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 0.0e+00 1119.4 725 92.3
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 0.0e+00 1102.8 725 90.8
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 0.0e+00 1098.2 725 90.5
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 0.0e+00 1096.6 735 90.1
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.2e-305 1052.7 735 87.2
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 2.4e-296 1021.9 725 85.4
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 2.1e-276 955.7 767 72.5
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 2.8e-273 945.3 725 74.6
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 4.6e-268 927.9 727 73.7
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 3.0e-235 818.9 728 67.3
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 7.2e-229 797.7 734 67.3
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 6.1e-228 794.7 752 65.6
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 8.0e-228 794.3 728 66.8
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 2.2e-225 786.2 729 66.4
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 2.2e-225 786.2 725 64.8
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 5.4e-224 781.6 728 65.5
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 5.9e-223 778.1 727 66.0
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 1.3e-222 776.9 728 68.4
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 3.8e-222 775.4 728 64.4
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 1.5e-221 773.5 717 66.1
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 1.2e-218 763.8 728 65.2
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 7.8e-215 751.1 726 63.4
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.0e-214 750.7 729 63.4
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 3.9e-214 748.8 730 63.3
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 5.0e-214 748.4 728 63.7
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.0e-214 748.4 736 62.1
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 1.9e-213 746.5 728 62.5
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 5.6e-213 745.0 717 64.6
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 6.2e-212 741.5 611 71.0
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 8.0e-212 741.1 728 62.1
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.6e-210 736.1 726 61.8
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 5.8e-210 734.9 731 62.2
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.2e-209 733.0 734 60.6
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 1.1e-208 730.7 735 62.3
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 1.9e-208 729.9 731 61.4
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 5.4e-208 728.4 733 61.1
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 7.0e-208 728.0 729 61.6
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 4.6e-207 725.3 723 62.2
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 3.1e-203 712.6 734 60.9
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 3.1e-203 712.6 734 62.0
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 5.2e-203 711.8 737 60.5
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 2.7e-199 699.5 620 67.3
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 7.8e-199 698.0 673 65.8
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 3.9e-198 695.7 760 58.3
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 1.6e-196 690.3 725 60.4
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 8.1e-196 688.0 740 59.3
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 2.4e-195 686.4 730 59.0
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 2.4e-195 686.4 740 59.2
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 2.9e-193 679.5 732 58.9
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 3.8e-193 679.1 744 60.5
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 8.4e-193 677.9 730 58.1
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 1.9e-192 676.8 784 56.9
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 2.1e-191 673.3 723 58.9
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 2.5e-189 666.4 736 58.3
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 4.3e-189 665.6 727 58.3
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 9.6e-189 664.5 741 56.4
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 9.6e-189 664.5 746 57.2
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 6.2e-188 661.8 731 59.4
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.8e-187 660.2 757 56.7
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 6.9e-187 658.3 741 56.1
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 1.5e-186 657.1 738 58.7
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 5.8e-186 655.2 735 56.9
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 5.8e-186 655.2 737 60.4
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 7.6e-186 654.8 739 57.2
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 8.4e-185 651.4 735 56.9
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 1.1e-184 651.0 731 58.7
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 1.4e-184 650.6 747 56.6
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 4.6e-183 645.6 734 57.5
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 6.6e-182 641.7 736 57.3
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 1.5e-181 640.6 731 57.5
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 3.3e-181 639.4 733 57.0
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 5.6e-181 638.6 733 57.3
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 7.3e-181 638.3 745 55.3
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 7.3e-181 638.3 740 57.0
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 6.9e-179 631.7 616 64.1
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 5.8e-178 628.6 755 56.2
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 1.4e-176 624.0 736 55.7
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 9.3e-176 621.3 733 57.0
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 1.1e-173 614.4 656 60.8
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 5.6e-173 612.1 752 54.3
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 7.4e-173 611.7 761 53.7
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 6.2e-172 608.6 730 55.1
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 1.8e-171 607.1 753 54.8
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 3.1e-171 606.3 732 56.4
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 2.0e-170 603.6 738 56.8
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 6.4e-169 598.6 766 53.1
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 9.3e-168 594.7 477 69.6
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 2.1e-167 593.6 733 55.1
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 1.1e-165 587.8 737 53.1
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 1.9e-165 587.0 743 52.0
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 5.6e-165 585.5 736 52.9
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 7.4e-165 585.1 724 54.4
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 1.6e-164 583.9 732 52.5
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 1.4e-163 580.9 740 53.4
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.5e-162 577.4 818 49.1
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 5.8e-162 575.5 794 53.0
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 1.3e-161 574.3 764 52.0
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 1.7e-161 573.9 777 55.3
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 1.6e-156 557.4 743 52.5
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 1.6e-151 540.8 380 78.2
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 2.0e-149 533.9 717 48.8
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 2.4e-147 526.9 745 48.1
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 4.5e-146 522.7 741 49.4
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 2.7e-143 513.5 741 49.5
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 4.7e-143 512.7 633 53.6
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 3.6e-127 459.9 449 62.6
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 1.1e-120 438.3 683 47.9
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 1.8e-115 421.0 554 52.9
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 2.8e-108 397.1 723 42.2
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.4e-99 368.2 227 85.9
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.4e-99 368.2 528 50.0
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.2e-98 365.2 528 49.8
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 1.2e-90 338.6 236 80.5
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 2.6e-85 320.9 210 81.4
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 2.6e-85 320.9 210 81.4
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 8.6e-81 305.8 445 48.3
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 1.5e-80 305.1 186 87.6
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 3.3e-80 303.9 231 73.2
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 8.1e-79 299.3 231 73.6
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 1.3e-73 282.0 468 44.0
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 6.9e-70 269.6 450 46.2
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 3.2e-67 260.8 172 83.1
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 7.9e-58 229.6 404 45.5
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 8.7e-57 226.1 564 34.8
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 1.5e-56 225.3 458 43.9
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 1.5e-56 225.3 136 86.0
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 9.3e-43 179.5 468 34.4
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.1e-40 172.6 316 44.9
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 2.5e-40 171.4 389 38.6
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 3.4e-37 161.0 206 53.9
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 1.7e-31 142.1 116 66.4
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 6.9e-30 136.7 86 88.4
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 2.9e-28 131.3 212 46.7
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 8.5e-28 129.8 243 39.9
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 2.2e-23 115.2 233 40.8
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 6.3e-23 113.6 68 89.7
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.0e-22 110.2 70 87.1
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 7.0e-22 110.2 70 87.1
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 4.5e-21 107.5 72 81.9
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.9e-21 107.1 109 62.4
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 7.2e-19 100.1 297 33.0
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 2.2e-12 78.6 454 26.7
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 8.5e-12 76.6 65 64.6
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 7.5e-08 63.5 50 72.0
PRCOL_00000913 Prasinoderma coloniale HOM05D004485 ORTHO05D005485 1.1e-06 59.7 471 24.6
AagrBONN_evm.TU.Sc2ySwM_344.4779 Anthoceros agrestis HOM05D004897 ORTHO05D005928 1.4e-06 59.3 356 25.0
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 3.1e-06 58.2 360 23.3
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 4.1e-06 57.8 77 45.5
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 7.0e-06 57.0 360 23.3
arahy.Tifrunner.gnm1.ann1.G8QSGL Arachis hypogaea HOM05D004485 ORTHO05D005485 9.1e-06 56.6 66 53.0
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 9.1e-06 56.6 355 22.8


User provided reference genes

Program Settings