Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 5.1e-255 884.0 483 100.0
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 1.1e-252 876.3 483 99.4
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.4e-233 812.8 485 94.4
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 9.4e-233 810.1 485 94.4
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 2.0e-230 802.4 485 93.6
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 6.3e-213 744.2 483 87.2
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 8.4e-157 557.8 488 68.4
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 1.2e-155 553.9 484 68.8
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 2.8e-152 542.7 429 70.2
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 3.1e-151 539.3 487 67.4
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 3.1e-151 539.3 491 68.0
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 1.3e-146 523.9 494 65.8
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 1.5e-145 520.4 487 62.6
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 4.8e-144 515.4 492 63.6
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.2e-142 510.8 492 63.4
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 1.8e-138 496.9 486 62.8
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 3.9e-138 495.7 484 63.0
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 5.1e-138 495.4 488 62.7
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 9.7e-137 491.1 495 62.8
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 6.9e-135 485.0 483 61.3
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 2.0e-134 483.4 484 59.9
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 7.2e-132 474.9 471 61.8
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 1.1e-129 467.6 487 61.6
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 1.5e-129 467.2 493 59.0
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 2.0e-129 466.8 484 59.1
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 3.3e-129 466.1 487 59.5
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 7.4e-129 464.9 484 60.3
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 8.2e-128 461.5 486 60.9
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 8.2e-128 461.5 484 58.9
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 5.3e-127 458.8 483 61.3
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 5.3e-127 458.8 471 59.9
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 6.9e-127 458.4 487 58.9
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 6.9e-127 458.4 478 59.8
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 2.0e-126 456.8 489 59.5
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 1.7e-125 453.8 486 59.5
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 1.7e-125 453.8 483 56.1
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 5.0e-125 452.2 475 58.7
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 8.5e-125 451.4 495 58.2
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 1.4e-124 450.7 494 59.3
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 7.2e-124 448.4 465 60.4
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 2.1e-123 446.8 470 60.9
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.7e-123 446.4 460 60.2
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 3.6e-123 446.0 492 57.5
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 7.9e-123 444.9 495 58.0
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.9e-122 442.6 460 59.8
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 6.7e-122 441.8 460 59.8
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.6e-121 439.9 487 56.9
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 3.3e-121 439.5 415 64.6
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 3.3e-121 439.5 489 57.7
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 2.2e-120 436.8 492 57.3
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 6.3e-120 435.3 504 56.3
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.5e-118 430.6 487 56.5
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 2.0e-118 430.3 489 56.0
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 2.0e-118 430.3 498 56.4
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 2.0e-118 430.3 489 57.3
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 4.5e-118 429.1 484 56.8
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 4.5e-118 429.1 480 56.2
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 1.3e-117 427.6 475 57.1
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 1.6e-115 420.6 485 56.5
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 2.7e-115 419.9 591 49.4
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 6.1e-115 418.7 489 55.0
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 1.0e-114 417.9 527 52.8
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 1.0e-114 417.9 480 54.8
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 1.4e-114 417.5 466 57.9
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 1.8e-114 417.2 493 56.2
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 3.0e-114 416.4 487 54.4
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 2.6e-113 413.3 486 57.0
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 2.6e-113 413.3 470 56.8
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 9.7e-113 411.4 470 56.6
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 2.8e-112 409.8 502 55.4
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 6.3e-112 408.7 381 60.6
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 4.1e-111 406.0 489 55.2
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 9.1e-111 404.8 481 53.6
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 2.6e-110 403.3 493 55.8
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 4.5e-110 402.5 513 53.0
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 5.9e-110 402.1 495 51.9
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 4.2e-108 396.0 486 53.9
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 2.1e-107 393.7 505 52.7
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 3.6e-107 392.9 529 51.4
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 6.1e-107 392.1 435 56.3
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 1.5e-105 387.5 459 53.6
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 2.0e-105 387.1 491 51.3
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 7.5e-105 385.2 499 53.1
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 7.5e-105 385.2 482 52.7
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 6.3e-104 382.1 361 63.2
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 1.4e-103 380.9 482 53.3
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 1.4e-103 380.9 484 53.1
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 3.1e-103 379.8 461 53.6
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 7.0e-103 378.6 489 53.6
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 1.2e-102 377.9 494 52.6
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 8.5e-101 371.7 500 52.6
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 1.9e-100 370.5 464 52.2
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 1.2e-99 367.9 496 49.8
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 4.7e-99 365.9 496 50.2
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 1.4e-98 364.4 446 50.9
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 1.2e-97 361.3 481 51.1
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 7.5e-97 358.6 485 51.5
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 9.8e-97 358.2 432 53.9
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 9.8e-97 358.2 516 48.8
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 1.3e-96 357.8 533 46.7
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 3.1e-95 353.2 341 62.2
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 3.5e-94 349.7 466 49.8
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 5.0e-93 345.9 489 49.3
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 1.9e-92 344.0 484 50.6
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 1.0e-90 338.2 487 48.9
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 6.8e-90 335.5 479 48.6
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 7.5e-89 332.0 462 49.6
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 2.8e-88 330.1 563 42.8
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 3.7e-88 329.7 481 49.3
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 6.6e-85 318.9 248 73.8
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 2.5e-84 317.0 485 47.8
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.1e-83 313.9 485 48.0
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 1.5e-81 307.8 486 46.9
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 2.9e-80 303.5 473 45.2
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 4.9e-80 302.8 420 50.2
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 2.4e-79 300.4 481 46.6
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 9.2e-79 298.5 286 62.9
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 4.7e-75 286.2 417 49.4
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 1.4e-74 284.6 262 64.5
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 6.8e-74 282.3 444 46.2
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 8.9e-74 282.0 478 45.0
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.9e-68 264.2 491 41.3
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 3.3e-68 263.5 284 60.6
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 4.0e-66 256.5 424 42.7
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 1.7e-64 251.1 403 44.9
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 2.2e-64 250.8 438 42.2
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 2.3e-53 214.2 294 50.7
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 1.3e-48 198.4 456 36.0
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 2.3e-45 187.6 407 36.1
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 2.4e-39 167.5 273 43.6
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 1.3e-32 145.2 416 30.3
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 2.1e-30 137.9 197 49.2
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 1.8e-26 124.8 458 28.4
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 5.3e-26 123.2 191 47.1
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 6.9e-26 122.9 317 33.1
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 9.0e-26 122.5 94 62.8
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 3.2e-23 114.0 174 40.2
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 3.2e-23 114.0 67 79.1
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 5.5e-23 113.2 76 72.4
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 5.5e-23 113.2 186 45.7
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.5e-22 110.5 160 50.6
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 5.7e-20 103.2 180 43.3
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.4e-18 97.8 100 59.0
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 3.1e-18 97.4 400 25.2
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 7.7e-17 92.8 191 41.9
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 5.0e-16 90.1 260 30.0
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 1.9e-15 88.2 172 46.5
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 2.5e-15 87.8 258 34.5
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 2.1e-14 84.7 144 38.2
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 2.7e-14 84.3 191 40.8
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 4.6e-14 83.6 79 58.2
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 1.4e-13 82.0 154 42.2
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 1.5e-12 78.6 155 43.9
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 6.3e-11 73.2 106 42.5
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 4.5e-09 67.0 70 48.6
Potri.002G130800 Populus trichocarpa HOM05D028338 ORTHO05D050528 5.9e-09 66.6 311 27.0
Sabra02G0102900 Salix brachista HOM05D028338 ORTHO05D050528 2.2e-08 64.7 322 27.0
Zm00001eb268130 Zea mays HOM05D004401 ORTHO05D005169 5.5e-07 60.1 99 49.5
Zm00001eb299150 Zea mays HOM05D004401 ORTHO05D005169 4.7e-06 57.0 111 40.5


User provided reference genes

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