Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.4e-82 308.9 171 100.0
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 9.3e-26 120.9 150 53.3
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.5e-15 87.0 63 77.8
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.5e-15 86.3 63 77.8
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.3e-15 85.9 62 79.0
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.3e-15 85.9 62 79.0
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.3e-15 85.9 62 79.0
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 7.4e-15 84.7 62 77.4
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 9.6e-15 84.3 62 79.0
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 9.6e-15 84.3 62 79.0
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.3e-14 84.0 60 80.0
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 2.8e-14 82.8 62 75.8
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.8e-14 82.8 62 75.8
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 4.8e-14 82.0 65 75.4
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 9.0e-13 77.8 68 64.7
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 9.0e-13 77.8 62 71.0
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 3.4e-12 75.9 60 71.7
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 2.2e-11 73.2 62 66.1
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 5.0e-11 72.0 112 46.4
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 1.1e-10 70.9 62 67.7
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 1.1e-10 70.9 62 64.5
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 2.5e-10 69.7 62 62.9
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 2.5e-10 69.7 62 62.9
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 4.2e-10 68.9 66 60.6
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 4.2e-10 68.9 62 62.9
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 5.5e-10 68.6 62 62.9
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 5.5e-10 68.6 62 66.1
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 9.3e-10 67.8 63 58.7
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 1.6e-09 67.0 62 62.9
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 2.1e-09 66.6 62 62.9
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 2.7e-09 66.2 62 61.3
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 2.7e-09 66.2 62 61.3
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.5e-09 65.9 63 57.1
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 3.5e-09 65.9 62 61.3
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 6.1e-09 65.1 62 61.3
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 6.1e-09 65.1 62 59.7
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 7.9e-09 64.7 69 62.3
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 7.9e-09 64.7 62 61.3
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 7.9e-09 64.7 63 58.7
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 7.9e-09 64.7 62 61.3
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 7.9e-09 64.7 62 58.1
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 7.9e-09 64.7 62 59.7
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 1.0e-08 64.3 62 59.7
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 1.0e-08 64.3 62 62.9
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 1.3e-08 63.9 68 52.9
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 1.3e-08 63.9 68 52.9
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 1.3e-08 63.9 62 59.7
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 1.3e-08 63.9 62 59.7
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.3e-08 63.9 62 61.3
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.3e-08 63.9 62 61.3
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.3e-08 63.9 62 61.3
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 1.3e-08 63.9 62 59.7
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 1.8e-08 63.5 62 59.7
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 1.8e-08 63.5 62 59.7
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 1.8e-08 63.5 62 54.8
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 1.8e-08 63.5 62 62.9
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 2.3e-08 63.2 62 59.7
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 2.3e-08 63.2 62 58.1
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 2.3e-08 63.2 62 58.1
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 2.3e-08 63.2 62 58.1
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 2.3e-08 63.2 62 58.1
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 2.3e-08 63.2 62 56.5
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 2.3e-08 63.2 62 59.7
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 3.0e-08 62.8 62 59.7
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 3.0e-08 62.8 62 59.7
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 3.9e-08 62.4 62 58.1
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 3.9e-08 62.4 62 56.5
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 5.1e-08 62.0 62 59.7
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 5.1e-08 62.0 62 59.7
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 5.1e-08 62.0 62 59.7
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 6.7e-08 61.6 62 59.7
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 6.7e-08 61.6 62 51.6
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 6.7e-08 61.6 62 61.3
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 8.7e-08 61.2 61 57.4
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 8.7e-08 61.2 61 57.4
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 8.7e-08 61.2 61 57.4
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 8.7e-08 61.2 62 59.7
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 8.7e-08 61.2 62 54.8
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 8.7e-08 61.2 62 59.7
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 8.7e-08 61.2 62 58.1
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 1.1e-07 60.8 62 58.1
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.5e-07 60.5 62 59.7
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 1.9e-07 60.1 62 59.7
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 2.5e-07 59.7 62 58.1
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 2.5e-07 59.7 62 56.5
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 2.5e-07 59.7 61 59.0
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 2.5e-07 59.7 62 59.7
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 3.3e-07 59.3 62 58.1
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 3.3e-07 59.3 62 56.5
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 3.3e-07 59.3 62 56.5
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 5.7e-07 58.5 62 56.5
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 5.7e-07 58.5 62 53.2
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 7.4e-07 58.2 56 57.1
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 7.4e-07 58.2 62 53.2
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 9.7e-07 57.8 62 54.8
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 1.3e-06 57.4 53 62.3
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 1.3e-06 57.4 62 48.4
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 1.3e-06 57.4 62 56.5
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 2.2e-06 56.6 61 55.7
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 2.2e-06 56.6 62 54.8
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 2.2e-06 56.6 62 54.8
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 2.8e-06 56.2 61 55.7
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 2.8e-06 56.2 62 53.2
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 3.7e-06 55.8 61 55.7
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 4.8e-06 55.5 61 54.1
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 4.8e-06 55.5 61 54.1
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 4.8e-06 55.5 62 51.6
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 4.8e-06 55.5 62 54.8
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 4.8e-06 55.5 62 48.4
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 4.8e-06 55.5 62 51.6
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 6.3e-06 55.1 62 54.8
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 8.2e-06 54.7 53 60.4


User provided reference genes

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