Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.2e-113 411.8 206 100.0
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.5e-102 376.3 206 94.2
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.5e-102 376.3 206 94.2
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 3.3e-102 375.2 206 93.7
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.4e-100 369.0 214 90.7
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 9.0e-100 367.1 206 91.3
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 6.2e-93 344.4 177 97.7
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 7.6e-91 337.4 206 85.0
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 8.4e-90 334.0 206 84.0
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 1.8e-87 326.2 206 81.6
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 2.5e-86 322.4 209 78.9
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.3e-85 320.1 209 78.5
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 1.4e-84 316.6 206 79.6
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 2.4e-84 315.8 206 77.2
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 2.4e-84 315.8 206 78.2
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 4.0e-84 315.1 206 77.7
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 9.0e-84 313.9 206 77.2
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 1.2e-83 313.5 206 77.2
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 1.5e-83 313.2 206 76.7
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 3.4e-83 312.0 206 76.2
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 7.6e-83 310.8 206 77.2
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 2.2e-82 309.3 204 77.9
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.9e-81 306.2 210 74.8
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 2.5e-81 305.8 207 77.3
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 3.2e-81 305.4 206 76.7
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 5.5e-81 304.7 206 76.2
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 5.5e-81 304.7 206 76.2
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 7.1e-81 304.3 206 77.2
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 7.1e-81 304.3 206 76.2
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.6e-80 303.1 210 74.8
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.7e-80 302.4 207 74.9
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 3.5e-80 302.0 204 76.0
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 4.6e-80 301.6 207 75.8
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 4.6e-80 301.6 206 75.7
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 4.6e-80 301.6 207 74.4
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 7.9e-80 300.8 207 75.8
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 7.9e-80 300.8 206 75.2
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 7.9e-80 300.8 206 73.8
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 1.3e-79 300.1 206 74.8
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 1.8e-79 299.7 206 72.8
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.8e-79 299.7 206 75.2
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 2.3e-79 299.3 206 74.3
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 2.3e-79 299.3 210 72.9
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 3.0e-79 298.9 206 74.8
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.9e-79 298.5 206 74.8
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 3.9e-79 298.5 207 74.9
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 5.1e-79 298.1 206 73.3
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 8.7e-79 297.4 187 80.2
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 8.7e-79 297.4 205 75.6
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 8.7e-79 297.4 205 73.7
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 8.7e-79 297.4 206 74.3
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 8.7e-79 297.4 210 73.8
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 1.1e-78 297.0 210 75.2
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 1.1e-78 297.0 213 72.3
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.1e-78 297.0 211 70.6
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 1.5e-78 296.6 209 72.7
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.5e-78 296.6 207 73.9
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.5e-78 296.6 206 73.3
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.9e-78 296.2 213 70.9
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 2.5e-78 295.8 213 71.8
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 2.5e-78 295.8 206 72.8
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 3.3e-78 295.4 206 73.8
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 4.3e-78 295.0 206 72.8
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 4.3e-78 295.0 215 72.1
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 4.3e-78 295.0 217 69.6
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 4.3e-78 295.0 206 73.8
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 4.3e-78 295.0 215 70.2
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 5.7e-78 294.7 207 72.5
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 7.4e-78 294.3 208 73.1
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 7.4e-78 294.3 206 71.8
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 9.7e-78 293.9 206 72.3
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 2.1e-77 292.7 208 72.1
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.1e-77 292.7 214 70.1
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 3.7e-77 292.0 209 71.3
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 3.7e-77 292.0 214 69.6
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 4.8e-77 291.6 206 73.3
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 6.3e-77 291.2 211 70.6
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 8.2e-77 290.8 213 70.4
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 1.1e-76 290.4 209 70.8
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.4e-76 290.0 208 71.6
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.4e-76 290.0 213 70.0
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.4e-76 290.0 209 71.3
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 1.8e-76 289.7 209 70.3
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.8e-76 289.7 210 69.5
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 4.1e-76 288.5 209 70.3
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 4.1e-76 288.5 209 70.3
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 4.1e-76 288.5 213 69.5
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 4.1e-76 288.5 212 70.8
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 1.2e-75 287.0 209 69.9
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.2e-75 287.0 206 70.9
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 1.5e-75 286.6 211 69.7
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.5e-75 286.6 206 70.9
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.5e-75 286.6 208 71.2
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.4e-75 285.4 213 68.1
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.4e-75 285.4 213 68.1
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 4.5e-75 285.0 207 72.5
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 7.6e-75 284.3 216 69.0
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 2.2e-74 282.7 209 70.8
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 2.2e-74 282.7 209 70.8
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 2.2e-74 282.7 208 71.2
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 3.8e-74 282.0 177 79.1
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 1.1e-73 280.4 212 69.8
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 4.2e-73 278.5 210 70.5
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 4.2e-73 278.5 175 80.0
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 4.2e-73 278.5 206 72.3
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 4.2e-73 278.5 204 71.1
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 5.5e-73 278.1 209 68.4
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 5.5e-73 278.1 206 70.9
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 3.6e-72 275.4 210 69.0
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 4.6e-72 275.0 213 69.0
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 4.6e-72 275.0 206 69.9
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 6.1e-72 274.6 213 69.0
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 3.0e-71 272.3 182 75.8
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 3.9e-71 271.9 210 69.5
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 5.1e-71 271.6 208 65.9
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 6.7e-71 271.2 179 76.5
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 6.7e-71 271.2 214 68.2
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 8.7e-71 270.8 204 67.2
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 8.7e-71 270.8 255 59.6
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 1.5e-70 270.0 209 67.5
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 1.9e-70 269.6 235 62.6
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 1.9e-70 269.6 206 68.9
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 3.3e-70 268.9 210 69.5
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 3.3e-70 268.9 203 71.4
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 4.8e-69 265.0 223 65.5
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 8.2e-69 264.2 181 71.8
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.8e-68 263.1 205 64.9
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 1.2e-67 260.4 214 65.4
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 3.4e-67 258.8 212 64.6
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 7.7e-67 257.7 201 66.7
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.3e-66 256.9 205 63.9
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.9e-65 253.1 213 64.8
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.6e-64 250.0 195 64.1
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 7.9e-64 247.7 206 64.6
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 1.5e-62 243.4 190 66.8
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 1.5e-62 243.4 245 58.0
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.5e-62 243.4 197 62.4
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 1.7e-61 240.0 184 69.0
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 1.7e-61 240.0 180 67.2
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 2.8e-61 239.2 193 63.7
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 2.0e-59 233.0 211 58.8
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 3.2e-57 225.7 206 60.7
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 1.8e-55 219.9 217 58.1
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 4.5e-51 205.3 154 68.2
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 2.8e-45 186.0 176 56.8
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 5.3e-44 181.8 128 73.4
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 4.5e-43 178.7 141 68.8
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 6.8e-39 164.9 99 84.8
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 2.0e-38 163.3 98 86.7
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 5.7e-38 161.8 188 53.7
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 5.7e-38 161.8 105 79.0
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 2.4e-36 156.4 97 72.2
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 7.5e-30 134.8 79 77.2
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 7.0e-28 128.3 71 77.5
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 1.7e-26 123.6 207 43.0
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 5.6e-25 118.6 107 62.6
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 9.5e-25 117.9 82 76.8
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.6e-24 117.1 101 64.4
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 2.2e-21 106.7 202 36.6
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 2.7e-19 99.8 204 34.8
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 3.5e-19 99.4 65 80.0
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 1.7e-18 97.1 71 63.4
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 1.5e-17 94.0 204 38.2
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 5.6e-17 92.0 62 67.7
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 9.5e-17 91.3 65 67.7
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 1.2e-16 90.9 67 61.2
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 3.1e-15 86.3 204 36.8
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 2.9e-13 79.7 165 36.4
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.4e-12 77.4 51 76.5
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.9e-12 77.0 53 73.6
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 1.2e-11 74.3 61 60.7
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 7.3e-09 65.1 72 52.8


User provided reference genes

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