Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G2662 Fragaria x ananassa HOM05D008040 ORTHO05D010075 2.1e-247 858.6 443 100.0
FvH4_1g14191 Fragaria vesca HOM05D008040 ORTHO05D010075 8.5e-164 580.9 455 73.6
RcHm_v2.0_Chr2g0102901 Rosa chinensis HOM05D008040 ORTHO05D010075 1.1e-131 474.2 325 73.2
FAN19G2417 Fragaria x ananassa HOM05D008040 ORTHO05D010075 3.7e-119 432.6 385 61.0
FAN26G0836 Fragaria x ananassa HOM05D008040 ORTHO05D010075 5.4e-118 428.7 382 60.7
FvH4_1g14071 Fragaria vesca HOM05D008040 ORTHO05D010075 9.2e-118 427.9 385 60.8
FAN23G2403 Fragaria x ananassa HOM05D008040 ORTHO05D010075 4.4e-112 409.1 366 61.2
RcHm_v2.0_Chr2g0102561 Rosa chinensis HOM05D008040 ORTHO05D010075 1.2e-106 391.0 359 57.4
FAN28G1672 Fragaria x ananassa HOM05D008040 ORTHO05D010075 2.3e-60 237.3 255 55.7
MD12G1211200 Malus domestica HOM05D008040 ORTHO05D010075 6.1e-53 212.6 344 42.7
Prupe.7G151200 Prunus persica HOM05D008040 ORTHO05D010075 6.1e-53 212.6 355 42.3
MD12G1051600 Malus domestica HOM05D008040 ORTHO05D010075 3.8e-47 193.4 286 44.1
FAN28G2855 Fragaria x ananassa HOM05D008040 ORTHO05D010075 1.3e-39 168.3 102 74.5
QL04p017640 Quercus lobata HOM05D008040 ORTHO05D010075 1.4e-36 158.3 315 35.6
QL04p017690 Quercus lobata HOM05D008040 ORTHO05D010075 3.0e-36 157.1 307 35.5
Sabra08G0010200 Salix brachista HOM05D008040 ORTHO05D010075 2.4e-33 147.5 265 34.7
Oeu009728.1 Olea europaea HOM05D008040 ORTHO05D010075 3.6e-29 133.7 277 32.9
Oeu009732.1 Olea europaea HOM05D001586 ORTHO05D001543 1.5e-27 128.3 280 32.5
MD15G1268400 Malus domestica HOM05D008040 ORTHO05D010075 1.7e-26 124.8 186 41.9
CSS0016313 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 3.7e-26 123.6 301 31.9
CSS0013591 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 4.1e-25 120.2 291 32.3
CSS0010874 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 5.4e-25 119.8 291 32.3
TWI77G0815 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 7.0e-25 119.4 323 32.2
AUR62035995 Chenopodium quinoa HOM05D008040 ORTHO05D010075 5.0e-23 113.2 260 32.3
Potri.013G110300 Populus trichocarpa HOM05D008040 ORTHO05D010075 8.6e-23 112.5 279 31.5
Potri.013G109900 Populus trichocarpa HOM05D008040 ORTHO05D010075 1.9e-22 111.3 281 31.7
EL10Ac2g04156 Beta vulgaris HOM05D008040 ORTHO05D010075 2.5e-22 110.9 259 32.8
vmacro17323 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 4.3e-22 110.2 218 35.3
CSS0049849 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 5.6e-22 109.8 293 31.4
Ah.07g206250 Amaranthus hybridus HOM05D008040 ORTHO05D010075 1.6e-21 108.2 242 32.2
COL.COLO4_12486 Corchorus olitorius HOM05D008040 ORTHO05D010075 1.6e-21 108.2 277 31.0
SGA_v2.0_scaffold147G36326 Striga asiatica HOM05D008040 ORTHO05D010075 2.1e-21 107.8 265 30.2
vmacro17325 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 2.1e-21 107.8 221 34.4
COL.COLO4_10414 Corchorus olitorius HOM05D008040 ORTHO05D010075 5.2e-20 103.2 269 29.0
COL.COLO4_30844 Corchorus olitorius HOM05D008040 ORTHO05D010075 5.2e-20 103.2 265 30.2
Manes.09G072126 Manihot esculenta HOM05D008040 ORTHO05D010075 8.9e-20 102.4 293 28.3
SGA_v2.0_scaffold286G47111 Striga asiatica HOM05D008040 ORTHO05D010075 8.9e-20 102.4 295 29.8
AUR62008579 Chenopodium quinoa HOM05D008040 ORTHO05D010075 1.5e-19 101.7 296 28.0
AUR62017713 Chenopodium quinoa HOM05D008040 ORTHO05D010075 1.5e-19 101.7 260 30.8
COL.COLO4_31566 Corchorus olitorius HOM05D008040 ORTHO05D010075 2.6e-19 100.9 250 31.2
COL.COLO4_31564 Corchorus olitorius HOM05D008040 ORTHO05D010075 7.5e-19 99.4 247 31.2
DCAR_021781 Daucus carota HOM05D008040 ORTHO05D010075 2.2e-18 97.8 223 30.5
SGA_v2.0_scaffold286G47115 Striga asiatica HOM05D008040 ORTHO05D010075 2.9e-18 97.4 292 28.8
TWI12G0677 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 8.3e-18 95.9 303 28.4
COL.COLO4_31567 Corchorus olitorius HOM05D008040 ORTHO05D010075 1.4e-17 95.1 313 27.2
COL.COLO4_31563 Corchorus olitorius HOM05D008040 ORTHO05D010075 5.4e-17 93.2 250 30.4
TWI12G0410 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 5.4e-17 93.2 321 28.7
Nitab4.5_0005142g0030 Nicotiana tabacum HOM05D008040 ORTHO05D010075 1.2e-16 92.0 306 28.4
Ciclev10006596m.g Citrus clementina HOM05D008040 ORTHO05D010075 1.6e-16 91.7 276 26.1
Ah.06g196070 Amaranthus hybridus HOM05D008040 ORTHO05D010075 3.5e-16 90.5 251 30.3
PSO339G3463 Papaver somniferum HOM05D008040 ORTHO05D010075 2.3e-15 87.8 276 27.5
Ah.02g122840 Amaranthus hybridus HOM05D008040 ORTHO05D010075 8.6e-15 85.9 228 29.4
COL.COLO4_10419 Corchorus olitorius HOM05D026534 ORTHO05D010075 1.9e-14 84.7 280 26.1
Sabra08G0010400 Salix brachista HOM05D008040 ORTHO05D010075 3.3e-14 84.0 119 42.9
PSO761G0098 Papaver somniferum HOM05D008040 ORTHO05D010075 4.3e-14 83.6 295 27.5
vmacro17324 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 8.9e-12 75.9 103 41.7
PSO017G2897 Papaver somniferum HOM05D008040 ORTHO05D010075 1.5e-11 75.1 250 28.0
Os01g0876300 Oryza sativa ssp. japonica HOM05D000664 ORTHO05D000491 2.6e-11 74.3 283 26.1
Ciclev10026974m.g Citrus clementina HOM05D008040 ORTHO05D010075 7.5e-11 72.8 266 25.9
Potri.008G016300 Populus trichocarpa HOM05D008040 ORTHO05D010075 7.5e-11 72.8 73 53.4
Oeu045297.1 Olea europaea HOM05D008040 ORTHO05D010075 1.7e-10 71.6 249 26.1
Aqoxy6G00905 Aquilegia oxysepala HOM05D008040 ORTHO05D010075 8.3e-10 69.3 272 27.2
Lsat_1_v5_gn_5_31100 Lactuca sativa HOM05D001729 ORTHO05D001155 1.4e-09 68.6 279 25.8
Potri.008G016150 Populus trichocarpa HOM05D008040 ORTHO05D010075 1.4e-09 68.6 74 50.0
QL04p017704 Quercus lobata HOM05D008040 ORTHO05D010075 1.4e-09 68.6 162 30.2
Rhsim01G0013600 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.0e-08 64.7 177 28.8
Rhsim08G0168000 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.0e-08 64.7 220 25.9
Aqoxy3G00584 Aquilegia oxysepala HOM05D008040 ORTHO05D010075 6.0e-08 63.2 203 25.6
Potri.013G109701 Populus trichocarpa HOM05D008040 ORTHO05D010075 6.0e-08 63.2 195 28.7
PGSC0003DMG400019443 Solanum tuberosum HOM05D002420 ORTHO05D002422 1.0e-07 62.4 179 29.6
CSS0031414 Camellia sinensis var. sinensis HOM05D000664 ORTHO05D000491 1.7e-07 61.6 89 40.4
Rhsim03G0248800 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.7e-07 61.6 90 36.7
HanXRQChr04g0121411 Helianthus annuus HOM05D001729 ORTHO05D001155 2.3e-07 61.2 277 25.6
Rhsim03G0249000 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.3e-07 61.2 95 35.8
Solyc05g051583.1 Solanum lycopersicum HOM05D000664 ORTHO05D000491 3.0e-07 60.8 136 32.4
QL05p074214 Quercus lobata HOM05D001729 ORTHO05D001155 5.0e-07 60.1 261 24.1
unitig_899.g14987 Utricularia gibba HOM05D002420 ORTHO05D002422 5.0e-07 60.1 197 26.9
Os01g0379400 Oryza sativa ssp. japonica HOM05D000664 ORTHO05D000491 6.6e-07 59.7 212 29.2
PSO761G0401 Papaver somniferum HOM05D008326 ORTHO05D001155 6.6e-07 59.7 262 24.0
Gorai.008G214400 Gossypium raimondii HOM05D000664 ORTHO05D000491 1.1e-06 58.9 153 27.5
Carub.0006s0659 Capsella rubella HOM05D000664 ORTHO05D000491 2.5e-06 57.8 297 24.6
Duzib205G1254 Durio zibethinus HOM05D000664 ORTHO05D000491 3.3e-06 57.4 149 32.2
Os08g0529300 Oryza sativa ssp. japonica HOM05D000664 ORTHO05D000491 3.3e-06 57.4 211 26.1
Rhsim01G0013700 Rhododendron simsii HOM05D000664 ORTHO05D000491 7.3e-06 56.2 98 35.7
MD02G1150200 Malus domestica HOM05D002420 ORTHO05D002422 9.5e-06 55.8 178 28.1


User provided reference genes

Program Settings