Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G2346 Fragaria x ananassa HOM05D006547 ORTHO05D008112 4.2e-75 284.6 148 100.0
FvH4_1g26990 Fragaria vesca HOM05D006547 ORTHO05D008112 2.1e-74 282.3 148 99.3
FAN23G3047 Fragaria x ananassa HOM05D006547 ORTHO05D008112 5.0e-68 261.2 148 94.6
FAN28G2331 Fragaria x ananassa HOM05D006547 ORTHO05D008112 8.5e-68 260.4 148 93.9
FAN26G3307 Fragaria x ananassa HOM05D006547 ORTHO05D008112 1.4e-65 253.1 148 93.2
RcHm_v2.0_Chr3g0487231 Rosa chinensis HOM05D006547 ORTHO05D008112 1.5e-43 179.9 146 73.3
MD17G1278000 Malus domestica HOM05D006547 ORTHO05D008112 1.7e-23 113.2 145 52.4
Atru.chr5.966 Acer truncatum HOM05D006547 ORTHO05D008112 3.7e-23 112.1 152 46.7
MD09G1285300 Malus domestica HOM05D006547 ORTHO05D008112 1.9e-22 109.8 145 50.3
Prupe.3G008700 Prunus persica HOM05D006547 ORTHO05D008112 5.4e-22 108.2 143 52.4
Glyma.20G175000 Glycine max HOM05D006547 ORTHO05D008112 2.5e-19 99.4 149 48.3
QL12p019056 Quercus lobata HOM05D006547 ORTHO05D008112 1.2e-18 97.1 147 46.9
Glyma.10G217100 Glycine max HOM05D006547 ORTHO05D008112 4.7e-18 95.1 149 47.0
Hma1.2p1_0486F.1_g163490 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 5.2e-17 91.7 148 45.3
CiPaw.07G119400 Carya illinoinensis HOM05D006547 ORTHO05D008112 6.8e-17 91.3 154 39.0
Lj5g0010023 Lotus japonicus HOM05D006547 ORTHO05D008112 8.9e-17 90.9 149 44.3
Potri.002G193300 Populus trichocarpa HOM05D006547 ORTHO05D008112 1.2e-16 90.5 145 48.3
TAR365G0268 Trochodendron aralioides HOM05D006547 ORTHO05D008112 3.4e-16 89.0 142 44.4
TAR633G2779 Trochodendron aralioides HOM05D006547 ORTHO05D008112 3.4e-16 89.0 146 42.5
TWI36G0249 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 7.5e-16 87.8 145 47.6
arahy.Tifrunner.gnm1.ann1.BQK7VT Arachis hypogaea HOM05D006547 ORTHO05D008112 9.9e-16 87.4 99 58.6
Ca_10619_v3 Cicer arietinum L. HOM05D006547 ORTHO05D008112 2.2e-15 86.3 146 41.8
Duzib251G0664 Durio zibethinus HOM05D006547 ORTHO05D008112 2.2e-15 86.3 146 42.5
Cpa.g.sc18.81 Carica papaya HOM05D006547 ORTHO05D008112 2.9e-15 85.9 139 43.2
TAR362G1145 Trochodendron aralioides HOM05D006547 ORTHO05D008112 2.9e-15 85.9 147 40.8
VMungo0720G0102 Vigna mungo HOM05D006547 ORTHO05D008112 2.9e-15 85.9 83 60.2
Manes.05G013600 Manihot esculenta HOM05D006547 ORTHO05D008112 3.7e-15 85.5 70 62.9
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 4.9e-15 85.1 139 41.0
Potri.014G118300 Populus trichocarpa HOM05D006547 ORTHO05D008112 4.9e-15 85.1 132 47.0
Duzib248G0337 Durio zibethinus HOM05D006547 ORTHO05D008112 1.4e-14 83.6 147 40.8
Haze_05072 Corylus avellana HOM05D006547 ORTHO05D008112 4.1e-14 82.0 139 44.6
Sabra02G0162800 Salix brachista HOM05D006547 ORTHO05D008112 4.1e-14 82.0 141 46.1
Lalb_Chr02g0141791 Lupinus albus HOM05D006547 ORTHO05D008112 7.1e-14 81.3 111 45.0
Sabra14G0087800 Salix brachista HOM05D006547 ORTHO05D008112 7.1e-14 81.3 137 43.8
TWI18G0834 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 7.1e-14 81.3 144 43.8
Phvul.007G089100 Phaseolus vulgaris HOM05D006547 ORTHO05D008112 9.2e-14 80.9 144 42.4
Medtr1g096530 Medicago truncatula HOM05D006547 ORTHO05D008112 1.6e-13 80.1 77 57.1
TPR.G8830 Trifolium pratense HOM05D006547 ORTHO05D008112 2.1e-13 79.7 84 56.0
COL.COLO4_23526 Corchorus olitorius HOM05D006547 ORTHO05D008112 3.5e-13 79.0 122 42.6
Cfa005764 Carpinus fangiana HOM05D006547 ORTHO05D008112 1.0e-12 77.4 143 41.3
Duzib268G0572 Durio zibethinus HOM05D006547 ORTHO05D008112 3.0e-12 75.9 146 39.0
Gohir.A12G145800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 3.0e-12 75.9 129 38.8
Manes.01G229900 Manihot esculenta HOM05D006547 ORTHO05D008112 3.0e-12 75.9 146 39.7
Sc17g0000340 Simmondsia chinensis HOM05D006547 ORTHO05D008112 3.0e-12 75.9 142 38.7
Gohir.D12G150400 Gossypium hirsutum HOM05D006547 ORTHO05D008112 3.9e-12 75.5 129 38.8
Gorai.008G161900 Gossypium raimondii HOM05D006547 ORTHO05D008112 3.9e-12 75.5 129 38.8
DCAR_012331 Daucus carota HOM05D006547 ORTHO05D008112 6.6e-12 74.7 99 46.5
Oeu038038.1 Olea europaea HOM05D006547 ORTHO05D008112 8.6e-12 74.3 110 45.5
Oeu008480.1 Olea europaea HOM05D006547 ORTHO05D008112 1.1e-11 73.9 149 34.9
CSS0011798 Camellia sinensis var. sinensis HOM05D006547 ORTHO05D008112 1.5e-11 73.6 142 38.0
CiPaw.08G087700 Carya illinoinensis HOM05D006547 ORTHO05D008112 1.9e-11 73.2 108 46.3
Ciclev10022819m.g Citrus clementina HOM05D006547 ORTHO05D008112 1.9e-11 73.2 146 39.7
Thecc.02G266700 Theobroma cacao HOM05D006547 ORTHO05D008112 1.9e-11 73.2 124 41.9
Gohir.A01G157750 Gossypium hirsutum HOM05D006547 ORTHO05D008112 3.3e-11 72.4 64 54.7
Lalb_Chr03g0036161 Lupinus albus HOM05D006547 ORTHO05D008112 3.3e-11 72.4 102 46.1
MBI18_g22340_MAGBIO Magnolia biondii HOM05D006547 ORTHO05D008112 4.3e-11 72.0 140 37.1
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 5.6e-11 71.6 73 53.4
Gorai.002G189200 Gossypium raimondii HOM05D006547 ORTHO05D008112 7.3e-11 71.2 97 45.4
Gohir.D01G152800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 9.5e-11 70.9 97 45.4
Carub.0004s3001 Capsella rubella HOM05D006547 ORTHO05D008112 1.2e-10 70.5 86 50.0
EL10As5g23562 Beta vulgaris HOM05D006547 ORTHO05D008112 2.1e-10 69.7 73 54.8
DCAR_005744 Daucus carota HOM05D006547 ORTHO05D008112 2.1e-10 69.7 110 40.9
CANSAT25G1528 Cannabis sativa HOM05D006547 ORTHO05D008112 2.8e-10 69.3 55 65.5
CARHR142670 Cardamine hirsuta HOM05D006547 ORTHO05D008112 2.8e-10 69.3 97 48.5
Ciclev10006764m.g Citrus clementina HOM05D006547 ORTHO05D008112 2.8e-10 69.3 62 56.5
Aa31LG1G28590 Aethionema arabicum HOM05D006547 ORTHO05D008112 3.6e-10 68.9 88 46.6
BcaB02g08786 Brassica carinata HOM05D006547 ORTHO05D008112 4.7e-10 68.6 91 50.5
BcaC01g05038 Brassica carinata HOM05D006547 ORTHO05D008112 4.7e-10 68.6 97 48.5
C03p30880 Brassica napus HOM05D006547 ORTHO05D008112 4.7e-10 68.6 97 48.5
C04p72660 Brassica napus HOM05D006547 ORTHO05D008112 4.7e-10 68.6 82 51.2
BolC3t15440H Brassica oleracea HOM05D006547 ORTHO05D008112 4.7e-10 68.6 97 48.5
Oeu044737.1 Olea europaea HOM05D006547 ORTHO05D008112 4.7e-10 68.6 78 50.0
BcaB06g29454 Brassica carinata HOM05D006547 ORTHO05D008112 6.2e-10 68.2 86 48.8
AL302U10010 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 8.1e-10 67.8 93 50.5
AL4G46840 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 8.1e-10 67.8 93 50.5
CAN.G293.16 Capsicum annuum HOM05D006547 ORTHO05D008112 8.1e-10 67.8 143 33.6
Thhalv10001736m.g Eutrema salsugineum HOM05D006547 ORTHO05D008112 8.1e-10 67.8 86 48.8
A05p00570 Brassica napus HOM05D006547 ORTHO05D008112 1.1e-09 67.4 108 42.6
Sp4g29240 Schrenkiella parvula HOM05D006547 ORTHO05D008112 1.1e-09 67.4 97 47.4
BolC4t21695H Brassica oleracea HOM05D006547 ORTHO05D008112 1.4e-09 67.0 108 42.6
CAN.G1280.37 Capsicum annuum HOM05D006547 ORTHO05D008112 1.8e-09 66.6 82 46.3
DCAR_018278 Daucus carota HOM05D006547 ORTHO05D008112 1.8e-09 66.6 106 40.6
HanXRQChr15g0465071 Helianthus annuus HOM05D006547 ORTHO05D008112 1.8e-09 66.6 90 48.9
A04p34890 Brassica napus HOM05D006547 ORTHO05D008112 2.4e-09 66.2 97 46.4
BraSC79t46680Z Brassica rapa HOM05D006547 ORTHO05D008112 2.4e-09 66.2 97 46.4
BraA05t19055Z Brassica rapa HOM05D006547 ORTHO05D008112 3.1e-09 65.9 114 39.5
SGA_v2.0_scaffold334G49085 Striga asiatica HOM05D006547 ORTHO05D008112 3.1e-09 65.9 60 50.0
vmacro02389 Vaccinium macrocarpon HOM05D006547 ORTHO05D008112 3.1e-09 65.9 86 47.7
AT2G47270 Arabidopsis thaliana HOM05D006547 ORTHO05D008112 4.0e-09 65.5 93 48.4
BcaB01g03174 Brassica carinata HOM05D006547 ORTHO05D008112 4.0e-09 65.5 97 47.4
DCAR_002885 Daucus carota HOM05D006547 ORTHO05D008112 4.0e-09 65.5 104 44.2
C04p00620 Brassica napus HOM05D006547 ORTHO05D008112 5.2e-09 65.1 104 43.3
Nitab4.5_0000363g0200 Nicotiana tabacum HOM05D006547 ORTHO05D008112 6.8e-09 64.7 69 55.1
ECA247G3592 Erigeron canadensis HOM05D006547 ORTHO05D008112 1.2e-08 63.9 116 41.4
Hma1.2p1_0408F.1_g146550 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 1.5e-08 63.5 83 49.4
Migut.D00065 Erythranthe guttata HOM05D006547 ORTHO05D008112 2.0e-08 63.2 82 47.6
Rhsim13G0003400 Rhododendron simsii HOM05D006547 ORTHO05D008112 2.0e-08 63.2 115 40.0
MSTRG.21702 Avicennia marina HOM05D006547 ORTHO05D008112 4.4e-08 62.0 90 47.8
Nn3g21744 Nelumbo nucifera HOM05D006547 ORTHO05D008112 4.4e-08 62.0 101 42.6
SGA_v2.0_scaffold376G50290 Striga asiatica HOM05D006547 ORTHO05D008112 4.4e-08 62.0 76 44.7
SalBow3G4324 Salvia bowleyana HOM05D006547 ORTHO05D008112 5.8e-08 61.6 83 43.4
Nitab4.5_0007407g0060 Nicotiana tabacum HOM05D006547 ORTHO05D008112 7.6e-08 61.2 59 50.8
Actinidia25863 Actinidia chinensis HOM05D006547 ORTHO05D008112 9.9e-08 60.8 88 50.0
Peaxi162Scf00058g00236 Petunia axillaris HOM05D006547 ORTHO05D008112 9.9e-08 60.8 61 54.1
THA.LOC104817451 Tarenaya hassleriana HOM05D006547 ORTHO05D008112 9.9e-08 60.8 103 41.7
HanXRQChr10g0285031 Helianthus annuus HOM05D006547 ORTHO05D008112 1.7e-07 60.1 63 50.8
MELO3C012934.2 Cucumis melo HOM05D006547 ORTHO05D008112 3.8e-07 58.9 78 41.0
CsaV3_3G026610 Cucumis sativus L. HOM05D006547 ORTHO05D008112 3.8e-07 58.9 78 41.0
Lsat_1_v5_gn_9_4661 Lactuca sativa HOM05D006547 ORTHO05D008112 4.9e-07 58.5 86 47.7
PSO761G0312 Papaver somniferum HOM05D006547 ORTHO05D008112 4.9e-07 58.5 116 35.3
Nn4g25552 Nelumbo nucifera HOM05D006547 ORTHO05D008112 8.4e-07 57.8 145 33.8
Nitab4.5_0000222g0070 Nicotiana tabacum HOM05D006547 ORTHO05D008112 8.4e-07 57.8 72 38.9
Sed0005978 Sechium edule HOM05D024969 ORTHO05D025069 1.1e-06 57.4 121 37.2
PSO210G6541 Papaver somniferum HOM05D006547 ORTHO05D008112 1.9e-06 56.6 114 35.1
Sc05g0000320 Simmondsia chinensis HOM05D006547 ORTHO05D008112 2.4e-06 56.2 109 37.6
ClCG10G011560 Citrullus lanatus HOM05D006547 ORTHO05D008112 4.2e-06 55.5 93 36.6
PGSC0003DMG401007298 Solanum tuberosum HOM05D006547 ORTHO05D008112 5.4e-06 55.1 96 40.6


User provided reference genes

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