Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G2325 Fragaria x ananassa HOM05D000529 ORTHO05D010311 1.5e-81 306.2 160 100.0
FvH4_1g15170 Fragaria vesca HOM05D000529 ORTHO05D000472 1.1e-57 226.9 154 82.5
FAN23G2222 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.1e-55 220.3 154 80.5
FAN28G0376 Fragaria x ananassa HOM05D000529 ORTHO05D000472 4.6e-51 204.9 152 76.3
FAN28G1580 Fragaria x ananassa HOM05D000529 ORTHO05D000472 4.6e-51 204.9 152 76.3
RcHm_v2.0_Chr3g0480561 Rosa chinensis HOM05D000529 ORTHO05D000472 1.5e-46 189.9 154 70.8
RcHm_v2.0_Chr3g0480541 Rosa chinensis HOM05D000529 ORTHO05D000472 3.5e-43 178.7 154 66.9
RcHm_v2.0_Chr2g0104431 Rosa chinensis HOM05D000529 ORTHO05D000472 6.6e-42 174.5 154 66.2
FvH4_1g15230 Fragaria vesca HOM05D000529 ORTHO05D000472 8.7e-42 174.1 152 66.4
FAN19G2597 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.9e-41 172.9 154 65.6
FAN26G2892 Fragaria x ananassa HOM05D000529 ORTHO05D000472 2.0e-38 162.9 130 73.1
RcHm_v2.0_Chr2g0104391 Rosa chinensis HOM05D000529 ORTHO05D000472 4.9e-37 158.3 124 71.8
FAN28G2498 Fragaria x ananassa HOM05D000529 ORTHO05D000472 6.2e-32 141.4 126 64.3
Prupe.7G138800 Prunus persica HOM05D000529 ORTHO05D000472 9.6e-25 117.5 152 48.7
Prupe.7G139500 Prunus persica HOM05D000529 ORTHO05D000472 6.2e-24 114.8 143 49.7
Prupe.7G139200 Prunus persica HOM05D000529 ORTHO05D000472 3.1e-23 112.5 143 48.3
MD02G1165600 Malus domestica HOM05D000529 ORTHO05D000472 2.2e-21 106.3 139 45.3
MD02G1166100 Malus domestica HOM05D000529 ORTHO05D000472 2.2e-21 106.3 139 43.9
RcHm_v2.0_Chr2g0104381 Rosa chinensis HOM05D000529 ORTHO05D000472 4.9e-21 105.1 127 51.2
FAN19G2554 Fragaria x ananassa HOM05D000529 ORTHO05D000472 6.4e-21 104.8 157 43.3
FvH4_1g15160 Fragaria vesca HOM05D000529 ORTHO05D000472 8.4e-21 104.4 155 43.9
MD02G1166300 Malus domestica HOM05D000529 ORTHO05D000472 3.2e-20 102.4 146 43.8
MD06G1115400 Malus domestica HOM05D000529 ORTHO05D025806 4.2e-20 102.1 150 43.3
Prupe.7G138400 Prunus persica HOM05D000046 ORTHO05D025806 7.1e-20 101.3 169 40.8
MD06G1115200 Malus domestica HOM05D000081 ORTHO05D000036 1.3e-18 97.1 146 42.5
MD15G1277700 Malus domestica HOM05D000529 ORTHO05D000472 3.0e-18 95.9 139 40.3
MD15G1277400 Malus domestica HOM05D000529 ORTHO05D000472 8.7e-18 94.4 139 40.3
MD02G1164800 Malus domestica HOM05D000529 ORTHO05D000472 3.3e-17 92.4 143 42.0
MD15G1278000 Malus domestica HOM05D000529 ORTHO05D000472 7.4e-17 91.3 146 39.0
MD02G1021700 Malus domestica HOM05D000041 ORTHO05D001532 2.1e-16 89.7 141 40.4
MD02G1022000 Malus domestica HOM05D008495 ORTHO05D025806 2.1e-16 89.7 141 40.4
Prupe.5G127900 Prunus persica HOM05D000529 ORTHO05D012517 4.8e-16 88.6 141 42.6
MD02G1165300 Malus domestica HOM05D000529 ORTHO05D000472 6.2e-16 88.2 143 40.6
Prupe.5G127600 Prunus persica HOM05D000529 ORTHO05D010311 6.2e-16 88.2 146 38.4
FAN23G2692 Fragaria x ananassa HOM05D000529 ORTHO05D000472 8.2e-16 87.8 154 41.6
FvH4_1g15220 Fragaria vesca HOM05D000529 ORTHO05D000472 1.1e-15 87.4 153 41.8
RcHm_v2.0_Chr2g0104561 Rosa chinensis HOM05D000046 ORTHO05D025806 1.1e-15 87.4 142 41.5
FAN08G1780 Fragaria x ananassa HOM05D000529 ORTHO05D010311 2.4e-15 86.3 131 42.7
RcHm_v2.0_Chr2g0104121 Rosa chinensis HOM05D000529 ORTHO05D000472 2.4e-15 86.3 149 40.3
RcHm_v2.0_Chr2g0104831 Rosa chinensis HOM05D000083 ORTHO05D002708 3.1e-15 85.9 162 37.0
RcHm_v2.0_Chr7g0230651 Rosa chinensis HOM05D000529 ORTHO05D010311 3.1e-15 85.9 138 43.5
FAN28G0855 Fragaria x ananassa HOM05D000529 ORTHO05D000472 6.9e-15 84.7 153 41.2
RcHm_v2.0_Chr7g0230551 Rosa chinensis HOM05D000529 ORTHO05D010311 9.0e-15 84.3 127 42.5
FvH4_1g13660 Fragaria vesca HOM05D001084 ORTHO05D001275 1.2e-14 84.0 140 42.1
FvH4_1g13670 Fragaria vesca HOM05D008495 ORTHO05D012517 1.2e-14 84.0 149 39.6
FvH4_5g32830 Fragaria vesca HOM05D000529 ORTHO05D010311 1.2e-14 84.0 140 41.4
RcHm_v2.0_Chr7g0230541 Rosa chinensis HOM05D000529 ORTHO05D010311 1.5e-14 83.6 143 39.9
RcHm_v2.0_Chr2g0143661 Rosa chinensis HOM05D003771 ORTHO05D010311 2.0e-14 83.2 154 37.7
MD15G1278100 Malus domestica HOM05D000529 ORTHO05D000472 2.6e-14 82.8 144 35.4
RcHm_v2.0_Chr7g0230701 Rosa chinensis HOM05D000529 ORTHO05D010311 4.5e-14 82.0 124 41.9
FvH4_1g15500 Fragaria vesca HOM05D000529 ORTHO05D000472 5.8e-14 81.6 143 40.6
MD06G1116000 Malus domestica HOM05D000054 ORTHO05D000286 1.3e-13 80.5 123 43.1
FAN18G1950 Fragaria x ananassa HOM05D000529 ORTHO05D010311 2.2e-13 79.7 129 43.4
RcHm_v2.0_Chr2g0104171 Rosa chinensis HOM05D000529 ORTHO05D000472 2.2e-13 79.7 143 37.8
MD02G1165900 Malus domestica HOM05D000529 ORTHO05D010311 2.9e-13 79.3 145 38.6
Prupe.7G139600 Prunus persica HOM05D000529 ORTHO05D000472 2.9e-13 79.3 141 41.1
FvH4_5g32820 Fragaria vesca HOM05D000529 ORTHO05D010311 6.5e-13 78.2 118 42.4
FAN26G0747 Fragaria x ananassa HOM05D001563 ORTHO05D000761 6.5e-13 78.2 142 40.1
Prupe.7G139800 Prunus persica HOM05D000529 ORTHO05D000472 8.4e-13 77.8 138 38.4
RcHm_v2.0_Chr2g0102741 Rosa chinensis HOM05D001084 ORTHO05D001275 8.4e-13 77.8 157 39.5
FAN18G1889 Fragaria x ananassa HOM05D000529 ORTHO05D010311 1.4e-12 77.0 131 38.2
MD15G1278700 Malus domestica HOM05D000046 ORTHO05D025806 1.4e-12 77.0 142 40.1
RcHm_v2.0_Chr2g0104611 Rosa chinensis HOM05D000046 ORTHO05D000472 1.9e-12 76.6 136 37.5
FvH4_1g15120 Fragaria vesca HOM05D000529 ORTHO05D000472 2.5e-12 76.3 139 37.4
MD02G1165500 Malus domestica HOM05D000529 ORTHO05D000472 2.5e-12 76.3 140 37.9
Prupe.5G127700 Prunus persica HOM05D000529 ORTHO05D010311 2.5e-12 76.3 150 38.7
FAN19G2196 Fragaria x ananassa HOM05D001084 ORTHO05D001275 4.2e-12 75.5 127 39.4
FAN04G0459 Fragaria x ananassa HOM05D000529 ORTHO05D010311 5.5e-12 75.1 131 38.2
FAN08G3343 Fragaria x ananassa HOM05D000529 ORTHO05D010311 7.1e-12 74.7 118 40.7
MD00G1053700 Malus domestica HOM05D000529 ORTHO05D000472 2.7e-11 72.8 119 42.9
MD15G1276900 Malus domestica HOM05D000529 ORTHO05D000472 2.7e-11 72.8 119 42.0
RcHm_v2.0_Chr2g0104761 Rosa chinensis HOM05D000529 ORTHO05D000472 3.5e-11 72.4 118 42.4
FvH4_5g32810 Fragaria vesca HOM05D000529 ORTHO05D010311 4.6e-11 72.0 120 40.8
FAN26G3207 Fragaria x ananassa HOM05D000529 ORTHO05D000472 4.6e-11 72.0 139 36.0
MD02G1164300 Malus domestica HOM05D000529 ORTHO05D000472 4.6e-11 72.0 135 41.5
FvH4_1g15330 Fragaria vesca HOM05D000529 ORTHO05D000472 1.3e-10 70.5 142 36.6
FAN19G2660 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.3e-10 70.5 142 36.6
FAN26G0958 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.8e-10 70.1 142 35.9
RcHm_v2.0_Chr7g0186691 Rosa chinensis HOM05D000529 ORTHO05D012517 1.8e-10 70.1 145 37.2
FAN08G1641 Fragaria x ananassa HOM05D000083 ORTHO05D025348 2.3e-10 69.7 142 38.7
FAN13G2049 Fragaria x ananassa HOM05D000306 ORTHO05D025348 2.3e-10 69.7 142 38.7
FAN23G1659 Fragaria x ananassa HOM05D000891 ORTHO05D000761 3.0e-10 69.3 140 37.1
FAN18G0367 Fragaria x ananassa HOM05D000083 ORTHO05D025348 3.9e-10 68.9 142 38.0
FAN18G3041 Fragaria x ananassa HOM05D000083 ORTHO05D025348 3.9e-10 68.9 142 38.0
FvH4_5g11250 Fragaria vesca HOM05D000306 ORTHO05D025348 5.1e-10 68.6 142 38.0
RcHm_v2.0_Chr2g0104191 Rosa chinensis HOM05D000529 ORTHO05D000472 5.1e-10 68.6 142 33.8
RcHm_v2.0_Chr7g0186621 Rosa chinensis HOM05D000529 ORTHO05D000628 6.7e-10 68.2 140 37.1
Prupe.7G139700 Prunus persica HOM05D000529 ORTHO05D000472 8.7e-10 67.8 152 34.9
MD02G1164700 Malus domestica HOM05D000529 ORTHO05D000472 1.1e-09 67.4 119 39.5
FAN05G0295 Fragaria x ananassa HOM05D000529 ORTHO05D000472 2.5e-09 66.2 144 37.5
RcHm_v2.0_Chr2g0104181 Rosa chinensis HOM05D000529 ORTHO05D000472 2.5e-09 66.2 146 34.9
RcHm_v2.0_Chr2g0104731 Rosa chinensis HOM05D000577 ORTHO05D003509 2.5e-09 66.2 148 33.8
FvH4_1g15090 Fragaria vesca HOM05D000529 ORTHO05D000472 3.3e-09 65.9 137 37.2
RcHm_v2.0_Chr2g0102961 Rosa chinensis HOM05D000046 ORTHO05D020739 3.3e-09 65.9 131 38.2
RcHm_v2.0_Chr2g0104741 Rosa chinensis HOM05D000529 ORTHO05D000472 4.3e-09 65.5 131 37.4
FAN19G0833 Fragaria x ananassa HOM05D000529 ORTHO05D000472 5.7e-09 65.1 128 39.8
MD02G1165400 Malus domestica HOM05D000529 ORTHO05D000472 7.4e-09 64.7 115 40.9
FvH4_6g50100 Fragaria vesca HOM05D000529 ORTHO05D000472 1.3e-08 63.9 157 35.7
FAN08G0175 Fragaria x ananassa HOM05D030830 ORTHO05D035356 1.3e-08 63.9 141 36.9
FAN14G3438 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.3e-08 63.9 157 35.7
FvH4_5g11090 Fragaria vesca HOM05D001011 ORTHO05D035356 1.6e-08 63.5 141 36.9
FvH4_5g11160 Fragaria vesca HOM05D008495 ORTHO05D035356 1.6e-08 63.5 141 36.9
FAN23G2757 Fragaria x ananassa HOM05D000529 ORTHO05D010311 1.6e-08 63.5 142 34.5
FAN26G1753 Fragaria x ananassa HOM05D000046 ORTHO05D020739 1.6e-08 63.5 161 34.8
FAN28G0579 Fragaria x ananassa HOM05D008495 ORTHO05D010311 1.6e-08 63.5 142 34.5
FAN18G2317 Fragaria x ananassa HOM05D008495 ORTHO05D010311 2.2e-08 63.2 141 36.9
FAN02G4337 Fragaria x ananassa HOM05D000529 ORTHO05D010311 2.8e-08 62.8 151 32.5
FAN28G0545 Fragaria x ananassa HOM05D000529 ORTHO05D000472 2.8e-08 62.8 147 34.0
FvH4_1g17470 Fragaria vesca HOM05D000529 ORTHO05D000472 4.8e-08 62.0 99 45.5
MD02G1164400 Malus domestica HOM05D000529 ORTHO05D000472 4.8e-08 62.0 67 52.2
FAN23G0627 Fragaria x ananassa HOM05D000046 ORTHO05D020739 6.3e-08 61.6 123 39.0
RcHm_v2.0_Chr7g0186631 Rosa chinensis HOM05D008495 ORTHO05D017958 8.2e-08 61.2 109 37.6
FAN04G2500 Fragaria x ananassa HOM05D008495 ORTHO05D010311 1.1e-07 60.8 141 35.5
RcHm_v2.0_Chr1g0326431 Rosa chinensis HOM05D000529 ORTHO05D000472 1.4e-07 60.5 136 33.1
RcHm_v2.0_Chr1g0373981 Rosa chinensis HOM05D000614 ORTHO05D000463 1.4e-07 60.5 161 35.4
FAN28G2659 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.8e-07 60.1 99 44.4
RcHm_v2.0_Chr3g0485281 Rosa chinensis HOM05D000529 ORTHO05D000472 1.8e-07 60.1 128 35.9
RcHm_v2.0_Chr7g0212121 Rosa chinensis HOM05D000026 ORTHO05D001436 3.1e-07 59.3 127 38.6
FAN13G0015 Fragaria x ananassa HOM05D000248 ORTHO05D012517 4.1e-07 58.9 145 34.5
FAN13G0180 Fragaria x ananassa HOM05D000248 ORTHO05D000146 4.1e-07 58.9 145 34.5
FAN13G1190 Fragaria x ananassa HOM05D008495 ORTHO05D012517 4.1e-07 58.9 142 35.9
FAN13G1884 Fragaria x ananassa HOM05D000248 ORTHO05D000146 4.1e-07 58.9 145 34.5
FAN13G2003 Fragaria x ananassa HOM05D000248 ORTHO05D000146 4.1e-07 58.9 145 34.5
FAN13G2246 Fragaria x ananassa HOM05D000248 ORTHO05D000146 4.1e-07 58.9 145 34.5
FAN13G2559 Fragaria x ananassa HOM05D000248 ORTHO05D000146 4.1e-07 58.9 145 34.5
FAN13G3219 Fragaria x ananassa HOM05D000248 ORTHO05D000146 4.1e-07 58.9 145 34.5
FvH4_7g14830 Fragaria vesca HOM05D000166 ORTHO05D001532 9.0e-07 57.8 156 30.1
Prupe.5G127800 Prunus persica HOM05D008495 ORTHO05D010311 9.0e-07 57.8 136 33.8
Prupe.7G138500 Prunus persica HOM05D000529 ORTHO05D000472 9.0e-07 57.8 150 30.0
RcHm_v2.0_Chr3g0473971 Rosa chinensis HOM05D000529 ORTHO05D000472 9.0e-07 57.8 149 33.6
arahy.Tifrunner.gnm1.ann1.KL9X3Y Arachis hypogaea HOM05D003581 ORTHO05D004332 1.2e-06 57.4 142 30.3
FAN05G0579 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.2e-06 57.4 170 31.8
FAN13G0044 Fragaria x ananassa HOM05D000529 ORTHO05D012517 1.2e-06 57.4 145 33.8
RcHm_v2.0_Chr2g0104241 Rosa chinensis HOM05D000529 ORTHO05D000472 1.2e-06 57.4 136 32.4
FAN13G2794 Fragaria x ananassa HOM05D000248 ORTHO05D000146 1.5e-06 57.0 145 33.8
FAN13G3019 Fragaria x ananassa HOM05D000248 ORTHO05D000146 1.5e-06 57.0 145 33.8
FAN13G1491 Fragaria x ananassa HOM05D000248 ORTHO05D000146 2.0e-06 56.6 145 33.8
FAN13G1701 Fragaria x ananassa HOM05D000248 ORTHO05D000146 2.0e-06 56.6 145 33.8
Prupe.7G140400 Prunus persica HOM05D000529 ORTHO05D020679 2.0e-06 56.6 138 27.5
arahy.Tifrunner.gnm1.ann1.50YJF0 Arachis hypogaea HOM05D000033 ORTHO05D085538 2.6e-06 56.2 157 28.7
arahy.Tifrunner.gnm1.ann1.AANK3P Arachis hypogaea HOM05D000033 ORTHO05D083727 2.6e-06 56.2 141 29.8
FAN06G0627 Fragaria x ananassa HOM05D000166 ORTHO05D001532 2.6e-06 56.2 156 29.5
FAN13G2602 Fragaria x ananassa HOM05D000248 ORTHO05D017958 2.6e-06 56.2 117 35.0
MD08G1007800 Malus domestica HOM05D000013 ORTHO05D248450 2.6e-06 56.2 134 35.1
FvH4_5g11200 Fragaria vesca HOM05D000248 ORTHO05D017958 4.5e-06 55.5 117 35.0
FvH4_5g11220 Fragaria vesca HOM05D000248 ORTHO05D017958 4.5e-06 55.5 117 35.0
MD02G1165800 Malus domestica HOM05D000529 ORTHO05D010311 4.5e-06 55.5 117 39.3
FAN18G1596 Fragaria x ananassa HOM05D000248 ORTHO05D017958 5.9e-06 55.1 117 35.0
FAN18G4033 Fragaria x ananassa HOM05D000248 ORTHO05D017958 5.9e-06 55.1 117 35.0
FAN08G3301 Fragaria x ananassa HOM05D000248 ORTHO05D017958 7.7e-06 54.7 117 34.2
FAN09G0851 Fragaria x ananassa HOM05D000529 ORTHO05D000472 7.7e-06 54.7 152 30.9
FAN28G1072 Fragaria x ananassa HOM05D008495 ORTHO05D020679 7.7e-06 54.7 131 37.4
FvH4_5g11120 Fragaria vesca HOM05D000248 ORTHO05D017958 1.0e-05 54.3 117 35.9
FvH4_5g11230 Fragaria vesca HOM05D000248 ORTHO05D017958 1.0e-05 54.3 117 35.9


User provided reference genes

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